Slot: target_subfragment
placeholder description; linter will ignore this
URI: MIXS:0000045
Applicable Classes
| Name | Description | Modifies Slot |
|---|---|---|
| Agriculture | placeholder description; linter will ignore this | yes |
| Checklist | placeholder description; linter will ignore this | yes |
| MimarksC | placeholder description; linter will ignore this | yes |
| MimarksS | placeholder description; linter will ignore this | yes |
| MigsBa | placeholder description; linter will ignore this | no |
| MigsBaPlantAssociated | placeholder description; linter will ignore this | no |
| MigsBaSediment | placeholder description; linter will ignore this | no |
| MigsBaSoil | placeholder description; linter will ignore this | no |
| MigsBaWater | placeholder description; linter will ignore this | no |
| MigsEu | placeholder description; linter will ignore this | no |
| MigsOrg | placeholder description; linter will ignore this | no |
| MigsPl | placeholder description; linter will ignore this | no |
| MigsVi | placeholder description; linter will ignore this | no |
| Mimag | placeholder description; linter will ignore this | no |
| Mims | placeholder description; linter will ignore this | no |
| MimsPlantAssociated | placeholder description; linter will ignore this | no |
| MimsSediment | placeholder description; linter will ignore this | no |
| MimsSoil | placeholder description; linter will ignore this | no |
| MimsWater | placeholder description; linter will ignore this | no |
| Misag | placeholder description; linter will ignore this | no |
| Miuvig | placeholder description; linter will ignore this | no |
Properties
-
Range: String
-
Regex pattern:
[^s\|][^\r\n\t\|]*
Examples
| Value |
|---|
| V6, V9, ITS |
Identifier and Mapping Information
Annotations
| property | value |
|---|---|
| global_raw_definition | Subfragment of a gene or locus. Important to e.g. identify special regions on marker genes like V6 on 16S rRNA |
Schema Source
- from schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
LinkML Source
name: target_subfragment
annotations:
global_raw_definition:
tag: global_raw_definition
value: Subfragment of a gene or locus. Important to e.g. identify special regions
on marker genes like V6 on 16S rRNA
occurrence:
tag: occurrence
value: '1'
description: placeholder description; linter will ignore this
title: target subfragment
notes:
- gene fragment name
examples:
- value: V6, V9, ITS
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000045
alias: target_subfragment
domain_of:
- Agriculture
- Checklist
- MimarksC
- MimarksS
range: string
pattern: '[^s\|][^\r\n\t\|]*'
structured_pattern:
syntax: '{free_text}'