Slot: subspecf_gen_lin
placeholder description; linter will ignore this
URI: MIXS:0000020
Applicable Classes
| Name | Description | Modifies Slot |
|---|---|---|
| Checklist | placeholder description; linter will ignore this | yes |
| FoodFoodProductionFacility | placeholder description; linter will ignore this | yes |
| MigsBa | placeholder description; linter will ignore this | yes |
| MigsEu | placeholder description; linter will ignore this | yes |
| MigsOrg | placeholder description; linter will ignore this | yes |
| MigsPl | placeholder description; linter will ignore this | yes |
| MigsVi | placeholder description; linter will ignore this | yes |
| MimarksC | placeholder description; linter will ignore this | yes |
| MigsBaPlantAssociated | placeholder description; linter will ignore this | no |
| MigsBaSediment | placeholder description; linter will ignore this | no |
| MigsBaSoil | placeholder description; linter will ignore this | no |
| MigsBaWater | placeholder description; linter will ignore this | no |
| Mimag | placeholder description; linter will ignore this | no |
| MimarksS | placeholder description; linter will ignore this | no |
| Mims | placeholder description; linter will ignore this | no |
| MimsPlantAssociated | placeholder description; linter will ignore this | no |
| MimsSediment | placeholder description; linter will ignore this | no |
| MimsSoil | placeholder description; linter will ignore this | no |
| MimsWater | placeholder description; linter will ignore this | no |
| Misag | placeholder description; linter will ignore this | no |
| Miuvig | placeholder description; linter will ignore this | no |
Properties
- Range: String
Identifier and Mapping Information
Annotations
| property | value |
|---|---|
| global_expected_value | genetic lineage below lowest rank of NCBI taxonomy, which is subspecies, e.g. serovar, biotype, ecotype, variety, cultivar |
Schema Source
- from schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
LinkML Source
name: subspecf_gen_lin
annotations:
global_expected_value:
tag: global_expected_value
value: genetic lineage below lowest rank of NCBI taxonomy, which is subspecies,
e.g. serovar, biotype, ecotype, variety, cultivar
global_raw_definition:
tag: global_raw_definition
value: Genetic distinctness of the sequenced organism below the subspecies level,
e.g., serovar, serotype, biotype, ecotype, or any relevant genetic typing schemes
like Group I plasmid. Subspecies should not be recorded in this term, but in
the NCBI taxonomy. Supply both the lineage name and the lineage rank separated
by a colon
global_value_syntax:
tag: global_value_syntax
value: '{rank name}:{text}'
occurrence:
tag: occurrence
value: '1'
description: placeholder description; linter will ignore this
title: subspecific genetic lineage
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000020
alias: subspecf_gen_lin
domain_of:
- Checklist
- FoodFoodProductionFacility
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- MimarksC
range: string