Slot: sop

placeholder description; linter will ignore this

URI: MIXS:0000090

Applicable Classes

Name	Description	Modifies Slot
Agriculture	placeholder description; linter will ignore this	yes
Checklist	placeholder description; linter will ignore this	yes
MigsBa	placeholder description; linter will ignore this	yes
MigsEu	placeholder description; linter will ignore this	yes
MigsOrg	placeholder description; linter will ignore this	yes
MigsPl	placeholder description; linter will ignore this	yes
MigsVi	placeholder description; linter will ignore this	yes
Mimag	placeholder description; linter will ignore this	yes
MimarksC	placeholder description; linter will ignore this	yes
MimarksS	placeholder description; linter will ignore this	yes
Mims	placeholder description; linter will ignore this	yes
Misag	placeholder description; linter will ignore this	yes
Miuvig	placeholder description; linter will ignore this	yes
MigsBaPlantAssociated	placeholder description; linter will ignore this	no
MigsBaSediment	placeholder description; linter will ignore this	no
MigsBaSoil	placeholder description; linter will ignore this	no
MigsBaWater	placeholder description; linter will ignore this	no
MimsPlantAssociated	placeholder description; linter will ignore this	no
MimsSediment	placeholder description; linter will ignore this	no
MimsSoil	placeholder description; linter will ignore this	no
MimsWater	placeholder description; linter will ignore this	no

Properties

• Range: String

• Regex pattern: (((10.\d{4,9}/[-._;()/:a-zA-Z0-9]+)|(PMID:(\d{7,8}))|((?:https?://)?(?:www\.)?[\w-]+(?:\.[\w-]+)+[\w.,@?^=%&:/~+#-]*[\w@?^=%&/~+#-]))\|)*(((10.\d{4,9}/[-._;()/:a-zA-Z0-9]+)|(PMID:(\d{7,8}))|((?:https?://)?(?:www\.)?[\w-]+(?:\.[\w-]+)+[\w.,@?^=%&:/~+#-]*[\w@?^=%&/~+#-])))

Identifier and Mapping Information

Annotations

property	value
global_expected_value	reference to SOP

Schema Source

• from schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first

LinkML Source

name: sop
annotations:
  global_expected_value:
    tag: global_expected_value
    value: reference to SOP
  global_raw_definition:
    tag: global_raw_definition
    value: Standard operating procedures used in assembly and/or annotation of genomes,
      metagenomes or environmental sequences
  global_value_syntax:
    tag: global_value_syntax
    value: '{PMID}|{DOI}|{URL}'
  occurrence:
    tag: occurrence
    value: m
description: placeholder description; linter will ignore this
title: relevant standard operating procedures
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000090
alias: sop
domain_of:
- Agriculture
- Checklist
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- Miuvig
range: string
pattern: (((10.\d{4,9}/[-._;()/:a-zA-Z0-9]+)|(PMID:(\d{7,8}))|((?:https?://)?(?:www\.)?[\w-]+(?:\.[\w-]+)+[\w.,@?^=%&:/~+#-]*[\w@?^=%&/~+#-]))\|)*(((10.\d{4,9}/[-._;()/:a-zA-Z0-9]+)|(PMID:(\d{7,8}))|((?:https?://)?(?:www\.)?[\w-]+(?:\.[\w-]+)+[\w.,@?^=%&:/~+#-]*[\w@?^=%&/~+#-])))
structured_pattern:
  syntax: ((({DOI})|({PMID})|({URL}))\|)*((({DOI})|({PMID})|({URL})))