Slot: sim_search_meth
placeholder description; linter will ignore this
URI: MIXS:0000063
Applicable Classes
| Name | Description | Modifies Slot |
|---|---|---|
| Checklist | placeholder description; linter will ignore this | yes |
| MigsBa | placeholder description; linter will ignore this | yes |
| MigsEu | placeholder description; linter will ignore this | yes |
| MigsOrg | placeholder description; linter will ignore this | yes |
| MigsPl | placeholder description; linter will ignore this | yes |
| MigsVi | placeholder description; linter will ignore this | yes |
| Mimag | placeholder description; linter will ignore this | yes |
| Mims | placeholder description; linter will ignore this | yes |
| Misag | placeholder description; linter will ignore this | yes |
| Miuvig | placeholder description; linter will ignore this | yes |
| MigsBaPlantAssociated | placeholder description; linter will ignore this | no |
| MigsBaSediment | placeholder description; linter will ignore this | no |
| MigsBaSoil | placeholder description; linter will ignore this | no |
| MigsBaWater | placeholder description; linter will ignore this | no |
| MimarksC | placeholder description; linter will ignore this | no |
| MimarksS | placeholder description; linter will ignore this | no |
| MimsPlantAssociated | placeholder description; linter will ignore this | no |
| MimsSediment | placeholder description; linter will ignore this | no |
| MimsSoil | placeholder description; linter will ignore this | no |
| MimsWater | placeholder description; linter will ignore this | no |
Properties
-
Range: String
-
Regex pattern:
[^s\|][^\r\n\t\|]*;[^s\|][^\r\n\t\|]*;[^s\|][^\r\n\t\|]*
Examples
| Value |
|---|
| HMMER3;3.1b2;hmmsearch, cutoff of 50 on score |
Identifier and Mapping Information
Annotations
| property | value |
|---|---|
| global_expected_value | names and versions of software(s), parameters used |
Schema Source
- from schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
LinkML Source
name: sim_search_meth
annotations:
global_expected_value:
tag: global_expected_value
value: names and versions of software(s), parameters used
global_raw_definition:
tag: global_raw_definition
value: Tool used to compare ORFs with database, along with version and cutoffs
used
occurrence:
tag: occurrence
value: '1'
description: placeholder description; linter will ignore this
title: similarity search method
examples:
- value: HMMER3;3.1b2;hmmsearch, cutoff of 50 on score
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000063
alias: sim_search_meth
domain_of:
- Checklist
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- Mims
- Misag
- Miuvig
range: string
pattern: '[^s\|][^\r\n\t\|]*;[^s\|][^\r\n\t\|]*;[^s\|][^\r\n\t\|]*'
structured_pattern:
syntax: '{software};{version};{parameters}'