Slot: samp_taxon_id
placeholder description; linter will ignore this
URI: MIXS:0001320
Applicable Classes
| Name | Description | Modifies Slot |
|---|---|---|
| Checklist | placeholder description; linter will ignore this | yes |
| MigsBa | placeholder description; linter will ignore this | yes |
| MigsEu | placeholder description; linter will ignore this | yes |
| MigsOrg | placeholder description; linter will ignore this | yes |
| MigsPl | placeholder description; linter will ignore this | yes |
| MigsVi | placeholder description; linter will ignore this | yes |
| Mimag | placeholder description; linter will ignore this | yes |
| MimarksC | placeholder description; linter will ignore this | yes |
| MimarksS | placeholder description; linter will ignore this | yes |
| Mims | placeholder description; linter will ignore this | yes |
| Misag | placeholder description; linter will ignore this | yes |
| Miuvig | placeholder description; linter will ignore this | yes |
| MigsBaPlantAssociated | placeholder description; linter will ignore this | no |
| MigsBaSediment | placeholder description; linter will ignore this | no |
| MigsBaSoil | placeholder description; linter will ignore this | no |
| MigsBaWater | placeholder description; linter will ignore this | no |
| MimsPlantAssociated | placeholder description; linter will ignore this | no |
| MimsSediment | placeholder description; linter will ignore this | no |
| MimsSoil | placeholder description; linter will ignore this | no |
| MimsWater | placeholder description; linter will ignore this | no |
Properties
-
Range: String
-
Regex pattern:
[^s\|][^\r\n\t\|]* [NCBITaxon:[0-9]+]
Examples
| Value |
|---|
| Gut Metagenome [NCBITaxon:749906] |
Identifier and Mapping Information
Annotations
| property | value |
|---|---|
| global_expected_value | Taxonomy ID |
Schema Source
- from schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
LinkML Source
name: samp_taxon_id
annotations:
global_expected_value:
tag: global_expected_value
value: Taxonomy ID
global_raw_definition:
tag: global_raw_definition
value: NCBI taxon id of the sample. Maybe be a single taxon or mixed taxa sample.
Use 'synthetic metagenome' for mock community/positive controls, or 'blank sample'
for negative controls.
global_value_syntax:
tag: global_value_syntax
value: '{text} [NCBI:txid]'
occurrence:
tag: occurrence
value: '1'
description: placeholder description; linter will ignore this
title: taxonomy ID of DNA sample
examples:
- value: Gut Metagenome [NCBITaxon:749906]
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0001320
alias: samp_taxon_id
domain_of:
- Checklist
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- Miuvig
range: string
pattern: '[^s\|][^\r\n\t\|]* [NCBITaxon:[0-9]+]'
structured_pattern:
syntax: '{term_label} [{ncbi_term_id}]'