Slot: otu_seq_comp_appr
placeholder description; linter will ignore this
URI: MIXS:0000086
Applicable Classes
| Name | Description | Modifies Slot |
|---|---|---|
| Checklist | placeholder description; linter will ignore this | yes |
| Miuvig | placeholder description; linter will ignore this | yes |
| MigsBa | placeholder description; linter will ignore this | no |
| MigsBaPlantAssociated | placeholder description; linter will ignore this | no |
| MigsBaSediment | placeholder description; linter will ignore this | no |
| MigsBaSoil | placeholder description; linter will ignore this | no |
| MigsBaWater | placeholder description; linter will ignore this | no |
| MigsEu | placeholder description; linter will ignore this | no |
| MigsOrg | placeholder description; linter will ignore this | no |
| MigsPl | placeholder description; linter will ignore this | no |
| MigsVi | placeholder description; linter will ignore this | no |
| Mimag | placeholder description; linter will ignore this | no |
| MimarksC | placeholder description; linter will ignore this | no |
| MimarksS | placeholder description; linter will ignore this | no |
| Mims | placeholder description; linter will ignore this | no |
| MimsPlantAssociated | placeholder description; linter will ignore this | no |
| MimsSediment | placeholder description; linter will ignore this | no |
| MimsSoil | placeholder description; linter will ignore this | no |
| MimsWater | placeholder description; linter will ignore this | no |
| Misag | placeholder description; linter will ignore this | no |
Properties
-
Range: String
-
Regex pattern:
[^s\|][^\r\n\t\|]*;[^s\|][^\r\n\t\|]*;[^s\|][^\r\n\t\|]*
Examples
| Value |
|---|
| blastn;2.6.0+;e-value cutoff: 0.001 |
Identifier and Mapping Information
Annotations
| property | value |
|---|---|
| global_expected_value | software name, version and relevant parameters |
Schema Source
- from schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
LinkML Source
name: otu_seq_comp_appr
annotations:
global_expected_value:
tag: global_expected_value
value: software name, version and relevant parameters
global_raw_definition:
tag: global_raw_definition
value: Tool and thresholds used to compare sequences when computing 'species-level'
OTUs
occurrence:
tag: occurrence
value: '1'
description: placeholder description; linter will ignore this
title: OTU sequence comparison approach
examples:
- value: 'blastn;2.6.0+;e-value cutoff: 0.001'
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000086
alias: otu_seq_comp_appr
domain_of:
- Checklist
- Miuvig
range: string
pattern: '[^s\|][^\r\n\t\|]*;[^s\|][^\r\n\t\|]*;[^s\|][^\r\n\t\|]*'
structured_pattern:
syntax: '{software};{version};{parameters}'