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Slot: otu_seq_comp_appr

placeholder description; linter will ignore this

URI: MIXS:0000086

Applicable Classes

Name Description Modifies Slot
Checklist placeholder description; linter will ignore this yes
Miuvig placeholder description; linter will ignore this yes
MigsBa placeholder description; linter will ignore this no
MigsBaPlantAssociated placeholder description; linter will ignore this no
MigsBaSediment placeholder description; linter will ignore this no
MigsBaSoil placeholder description; linter will ignore this no
MigsBaWater placeholder description; linter will ignore this no
MigsEu placeholder description; linter will ignore this no
MigsOrg placeholder description; linter will ignore this no
MigsPl placeholder description; linter will ignore this no
MigsVi placeholder description; linter will ignore this no
Mimag placeholder description; linter will ignore this no
MimarksC placeholder description; linter will ignore this no
MimarksS placeholder description; linter will ignore this no
Mims placeholder description; linter will ignore this no
MimsPlantAssociated placeholder description; linter will ignore this no
MimsSediment placeholder description; linter will ignore this no
MimsSoil placeholder description; linter will ignore this no
MimsWater placeholder description; linter will ignore this no
Misag placeholder description; linter will ignore this no

Properties

  • Range: String

  • Regex pattern: [^s\|][^\r\n\t\|]*;[^s\|][^\r\n\t\|]*;[^s\|][^\r\n\t\|]*

Examples

Value
blastn;2.6.0+;e-value cutoff: 0.001

Identifier and Mapping Information

Annotations

property value
global_expected_value software name, version and relevant parameters

Schema Source

  • from schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first

LinkML Source

name: otu_seq_comp_appr
annotations:
  global_expected_value:
    tag: global_expected_value
    value: software name, version and relevant parameters
  global_raw_definition:
    tag: global_raw_definition
    value: Tool and thresholds used to compare sequences when computing 'species-level'
      OTUs
  occurrence:
    tag: occurrence
    value: '1'
description: placeholder description; linter will ignore this
title: OTU sequence comparison approach
examples:
- value: 'blastn;2.6.0+;e-value cutoff: 0.001'
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000086
alias: otu_seq_comp_appr
domain_of:
- Checklist
- Miuvig
range: string
pattern: '[^s\|][^\r\n\t\|]*;[^s\|][^\r\n\t\|]*;[^s\|][^\r\n\t\|]*'
structured_pattern:
  syntax: '{software};{version};{parameters}'