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Slot: org_count_qpcr_info

placeholder description; linter will ignore this

URI: MIXS:0000099

Applicable Classes

Name Description Modifies Slot
HydrocarbonResourcesCores placeholder description; linter will ignore this yes
HydrocarbonResourcesFluidsSwabs placeholder description; linter will ignore this yes

Properties

Identifier and Mapping Information

Annotations

property value
global_expected_value gene name;FWD:forward primer sequence;REV:reverse primer sequence;initial denaturation:degrees_minutes;denaturation:degrees_minutes;annealing:degrees_minutes;elongation:degrees_minutes;final elongation:degrees_minutes; total cycles

Schema Source

  • from schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first

LinkML Source

name: org_count_qpcr_info
annotations:
  global_expected_value:
    tag: global_expected_value
    value: gene name;FWD:forward primer sequence;REV:reverse primer sequence;initial
      denaturation:degrees_minutes;denaturation:degrees_minutes;annealing:degrees_minutes;elongation:degrees_minutes;final
      elongation:degrees_minutes; total cycles
  global_preferred_unit:
    tag: global_preferred_unit
    value: number of cells per gram (or ml or cm^2)
  global_raw_definition:
    tag: global_raw_definition
    value: If qpcr was used for the cell count, the target gene name, the primer sequence
      and the cycling conditions should also be provided.
  global_value_syntax:
    tag: global_value_syntax
    value: '{text};FWD:{dna};REV:{dna};initial denaturation:degrees_minutes;denaturation:degrees_minutes;annealing:degrees_minutes;elongation:degrees_minutes;final
      elongation:degrees_minutes; total cycles'
  occurrence:
    tag: occurrence
    value: '1'
description: placeholder description; linter will ignore this
title: organism count qPCR information
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000099
alias: org_count_qpcr_info
domain_of:
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
range: string