Slot: host_body_site
placeholder description; linter will ignore this
URI: MIXS:0000867
Applicable Classes
| Name | Description | Modifies Slot |
|---|---|---|
| HostAssociated | placeholder description; linter will ignore this | yes |
| HumanAssociated | placeholder description; linter will ignore this | yes |
| HumanGut | placeholder description; linter will ignore this | yes |
| HumanOral | placeholder description; linter will ignore this | yes |
| HumanSkin | placeholder description; linter will ignore this | yes |
| HumanVaginal | placeholder description; linter will ignore this | yes |
| SymbiontAssociated | placeholder description; linter will ignore this | yes |
Properties
-
Range: String
-
Regex pattern:
[^s\|][^\r\n\t\|]* [[a-zA-Z]+:[0-9]+]
See Also
Identifier and Mapping Information
Annotations
| property | value |
|---|---|
| global_raw_definition | Body site where the sample was obtained from, such as a specific organ or tissue (tongue, lung etc.). Accepts terms from the foundational model of anatomy ontology (fma) (v 4.11.0) or Uber-anatomy ontology (UBERON) (v releases/2014-06-15) |
Schema Source
- from schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
LinkML Source
name: host_body_site
annotations:
global_raw_definition:
tag: global_raw_definition
value: Body site where the sample was obtained from, such as a specific organ
or tissue (tongue, lung etc.). Accepts terms from the foundational model of
anatomy ontology (fma) (v 4.11.0) or Uber-anatomy ontology (UBERON) (v releases/2014-06-15)
occurrence:
tag: occurrence
value: '1'
description: placeholder description; linter will ignore this
title: host body site
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
see_also:
- http://purl.bioontology.org/ontology/FMA
- http://purl.bioontology.org/ontology/UBERON
rank: 1000
slot_uri: MIXS:0000867
alias: host_body_site
domain_of:
- HostAssociated
- HumanAssociated
- HumanGut
- HumanOral
- HumanSkin
- HumanVaginal
- SymbiontAssociated
range: string
pattern: '[^s\|][^\r\n\t\|]* [[a-zA-Z]+:[0-9]+]'
structured_pattern:
syntax: '{term_label} [{term_id}]'