Slot: geo_loc_name
placeholder description; linter will ignore this
URI: MIXS:0000010
Applicable Classes
| Name | Description | Modifies Slot |
|---|---|---|
| Checklist | placeholder description; linter will ignore this | yes |
| FoodAnimalAndAnimalFeed | placeholder description; linter will ignore this | yes |
| FoodFarmEnvironment | placeholder description; linter will ignore this | yes |
| FoodFoodProductionFacility | placeholder description; linter will ignore this | yes |
| FoodHumanFoods | placeholder description; linter will ignore this | yes |
| MigsBa | placeholder description; linter will ignore this | yes |
| MigsEu | placeholder description; linter will ignore this | yes |
| MigsOrg | placeholder description; linter will ignore this | yes |
| MigsPl | placeholder description; linter will ignore this | yes |
| MigsVi | placeholder description; linter will ignore this | yes |
| Mimag | placeholder description; linter will ignore this | yes |
| MimarksC | placeholder description; linter will ignore this | yes |
| MimarksS | placeholder description; linter will ignore this | yes |
| Mims | placeholder description; linter will ignore this | yes |
| Misag | placeholder description; linter will ignore this | yes |
| Miuvig | placeholder description; linter will ignore this | yes |
| SymbiontAssociated | placeholder description; linter will ignore this | yes |
| MigsBaPlantAssociated | placeholder description; linter will ignore this | no |
| MigsBaSediment | placeholder description; linter will ignore this | no |
| MigsBaSoil | placeholder description; linter will ignore this | no |
| MigsBaWater | placeholder description; linter will ignore this | no |
| MimsPlantAssociated | placeholder description; linter will ignore this | no |
| MimsSediment | placeholder description; linter will ignore this | no |
| MimsSoil | placeholder description; linter will ignore this | no |
| MimsWater | placeholder description; linter will ignore this | no |
Properties
-
Range: String
-
Regex pattern:
[^s\|][^\r\n\t\|]*: [^s\|][^\r\n\t\|]*, [^s\|][^\r\n\t\|]*
See Also
Identifier and Mapping Information
Annotations
| property | value |
|---|---|
| global_expected_value | country or sea name (INSDC or GAZ): region(GAZ), specific location name |
Schema Source
- from schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
LinkML Source
name: geo_loc_name
annotations:
global_expected_value:
tag: global_expected_value
value: 'country or sea name (INSDC or GAZ): region(GAZ), specific location name'
global_raw_definition:
tag: global_raw_definition
value: Geographical origin of the sample as defined by the country or sea name
followed by specific region name. Country or sea names should be chosen from
the INSDC country list, or the GAZ ontology
global_value_syntax:
tag: global_value_syntax
value: '{term}: {term}, {text}'
occurrence:
tag: occurrence
value: '1'
description: placeholder description; linter will ignore this
title: geographic location (country and/or sea,region)
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
see_also:
- http://insdc.org/country.html
- http://purl.bioontology.org/ontology/GAZ
rank: 1000
slot_uri: MIXS:0000010
alias: geo_loc_name
domain_of:
- Checklist
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- Miuvig
- SymbiontAssociated
range: string
pattern: '[^s\|][^\r\n\t\|]*: [^s\|][^\r\n\t\|]*, [^s\|][^\r\n\t\|]*'
structured_pattern:
syntax: '{term}: {term}, {free_text}'