Slot: env_broad_scale
placeholder description; linter will ignore this
URI: MIXS:0000012
Applicable Classes
| Name | Description | Modifies Slot |
|---|---|---|
| Checklist | placeholder description; linter will ignore this | yes |
| FoodAnimalAndAnimalFeed | placeholder description; linter will ignore this | yes |
| FoodFarmEnvironment | placeholder description; linter will ignore this | yes |
| FoodFoodProductionFacility | placeholder description; linter will ignore this | yes |
| FoodHumanFoods | placeholder description; linter will ignore this | yes |
| MigsBa | placeholder description; linter will ignore this | yes |
| MigsEu | placeholder description; linter will ignore this | yes |
| MigsOrg | placeholder description; linter will ignore this | yes |
| MigsPl | placeholder description; linter will ignore this | yes |
| MigsVi | placeholder description; linter will ignore this | yes |
| Mimag | placeholder description; linter will ignore this | yes |
| MimarksC | placeholder description; linter will ignore this | yes |
| MimarksS | placeholder description; linter will ignore this | yes |
| Mims | placeholder description; linter will ignore this | yes |
| Misag | placeholder description; linter will ignore this | yes |
| Miuvig | placeholder description; linter will ignore this | yes |
| SymbiontAssociated | placeholder description; linter will ignore this | yes |
| MigsBaPlantAssociated | placeholder description; linter will ignore this | no |
| MigsBaSediment | placeholder description; linter will ignore this | no |
| MigsBaSoil | placeholder description; linter will ignore this | no |
| MigsBaWater | placeholder description; linter will ignore this | no |
| MimsPlantAssociated | placeholder description; linter will ignore this | no |
| MimsSediment | placeholder description; linter will ignore this | no |
| MimsSoil | placeholder description; linter will ignore this | no |
| MimsWater | placeholder description; linter will ignore this | no |
Properties
-
Range: String
-
Regex pattern:
[^s\|][^\r\n\t\|]* [[a-zA-Z]+:[0-9]+]
Comments
- desert
- rainforest
See Also
- http://purl.obolibrary.org/obo/ENVO_00000428
- https://github.com/EnvironmentOntology/envo/wiki/Using-ENVO-with-MIxS
Identifier and Mapping Information
Annotations
| property | value |
|---|---|
| global_expected_value | The major environment type(s) where the sample was collected. Recommend subclasses of biome [ENVO:00000428]. Multiple terms can be separated by one or more pipes. |
Schema Source
- from schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
LinkML Source
name: env_broad_scale
annotations:
global_expected_value:
tag: global_expected_value
value: The major environment type(s) where the sample was collected. Recommend
subclasses of biome [ENVO:00000428]. Multiple terms can be separated by one
or more pipes.
global_raw_definition:
tag: global_raw_definition
value: Major environmental system the sample or specimen came from. The system(s)
identified should have a coarse spatial grain, to provide the general environmental
context of where the sampling was done. We recommend using subclasses of EnvO's
biome class.
occurrence:
tag: occurrence
value: '1'
description: placeholder description; linter will ignore this
title: broad-scale environmental context
comments:
- desert
- rainforest
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
see_also:
- http://purl.obolibrary.org/obo/ENVO_00000428
- https://github.com/EnvironmentOntology/envo/wiki/Using-ENVO-with-MIxS
rank: 1000
slot_uri: MIXS:0000012
alias: env_broad_scale
domain_of:
- Checklist
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- Miuvig
- SymbiontAssociated
range: string
pattern: '[^s\|][^\r\n\t\|]* [[a-zA-Z]+:[0-9]+]'
structured_pattern:
syntax: '{term_label} [{term_id}]'