Slot: contam_screen_param
placeholder description; linter will ignore this
URI: MIXS:0000073
Applicable Classes
| Name | Description | Modifies Slot |
|---|---|---|
| Checklist | placeholder description; linter will ignore this | yes |
| Mimag | placeholder description; linter will ignore this | yes |
| Misag | placeholder description; linter will ignore this | yes |
| MigsBa | placeholder description; linter will ignore this | no |
| MigsBaPlantAssociated | placeholder description; linter will ignore this | no |
| MigsBaSediment | placeholder description; linter will ignore this | no |
| MigsBaSoil | placeholder description; linter will ignore this | no |
| MigsBaWater | placeholder description; linter will ignore this | no |
| MigsEu | placeholder description; linter will ignore this | no |
| MigsOrg | placeholder description; linter will ignore this | no |
| MigsPl | placeholder description; linter will ignore this | no |
| MigsVi | placeholder description; linter will ignore this | no |
| MimarksC | placeholder description; linter will ignore this | no |
| MimarksS | placeholder description; linter will ignore this | no |
| Mims | placeholder description; linter will ignore this | no |
| MimsPlantAssociated | placeholder description; linter will ignore this | no |
| MimsSediment | placeholder description; linter will ignore this | no |
| MimsSoil | placeholder description; linter will ignore this | no |
| MimsWater | placeholder description; linter will ignore this | no |
| Miuvig | placeholder description; linter will ignore this | no |
Properties
- Range: String
Identifier and Mapping Information
Annotations
| property | value |
|---|---|
| global_expected_value | enumeration;value or name |
Schema Source
- from schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
LinkML Source
name: contam_screen_param
annotations:
global_expected_value:
tag: global_expected_value
value: enumeration;value or name
global_raw_definition:
tag: global_raw_definition
value: Specific parameters used in the decontamination software, such as reference
database, coverage, and kmers. Combinations of these parameters may also be
used, i.e. kmer and coverage, or reference database and kmer
global_value_syntax:
tag: global_value_syntax
value: '[ref db|kmer|coverage|combination];{text|integer}'
occurrence:
tag: occurrence
value: '1'
description: placeholder description; linter will ignore this
title: contamination screening parameters
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000073
alias: contam_screen_param
domain_of:
- Checklist
- Mimag
- Misag
range: string