Slot: antibiotic_regm

placeholder description; linter will ignore this

URI: MIXS:0000553

Applicable Classes

Name	Description	Modifies Slot
PlantAssociated	placeholder description; linter will ignore this	yes
MigsBaPlantAssociated	placeholder description; linter will ignore this	no
MimsPlantAssociated	placeholder description; linter will ignore this	no

Properties

• Range: String

• Regex pattern: (([^s\|][^\r\n\t\|]*;[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*;R[+-]?[1-9][0-9]*/\d{4}-\d\d-\d\d[Tt]\d\d:\d\d(:\d\d(\.\d+)?([Zz]|[\+\-]\d\d:\d\d)?)?/\d{4}-\d\d-\d\d[Tt]\d\d:\d\d(:\d\d(\.\d+)?([Zz]|[\+\-]\d\d:\d\d)?)?/P(?=\d+[YMWD])(\d+Y)?(\d+M)?(\d+W)?(\d+D)?(T(?=\d+[HMS])(\d+H)?(\d+M)?(\d+S)?)?)\|)*[^s\|][^\r\n\t\|]*;[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*;R[+-]?[1-9][0-9]*/\d{4}-\d\d-\d\d[Tt]\d\d:\d\d(:\d\d(\.\d+)?([Zz]|[\+\-]\d\d:\d\d)?)?/\d{4}-\d\d-\d\d[Tt]\d\d:\d\d(:\d\d(\.\d+)?([Zz]|[\+\-]\d\d:\d\d)?)?/P(?=\d+[YMWD])(\d+Y)?(\d+M)?(\d+W)?(\d+D)?(T(?=\d+[HMS])(\d+H)?(\d+M)?(\d+S)?)?

Examples

Value
penicillin;5 milligram;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M

Identifier and Mapping Information

Annotations

property	value
global_expected_value	antibiotic name;antibiotic amount;treatment interval and duration

Schema Source

• from schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first

LinkML Source

name: antibiotic_regm
annotations:
  global_expected_value:
    tag: global_expected_value
    value: antibiotic name;antibiotic amount;treatment interval and duration
  global_preferred_unit:
    tag: global_preferred_unit
    value: milligram
  global_raw_definition:
    tag: global_raw_definition
    value: Treatment involving antibiotic administration; should include the name
      of antibiotic, amount administered, treatment regimen including how many times
      the treatment was repeated, how long each treatment lasted, and the start and
      end time of the entire treatment
  occurrence:
    tag: occurrence
    value: m
description: placeholder description; linter will ignore this
title: antibiotic regimen
examples:
- value: penicillin;5 milligram;R2/2018-05-11T14:30/2018-05-11T19:30/P1H30M
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000553
alias: antibiotic_regm
domain_of:
- PlantAssociated
range: string
pattern: (([^s\|][^\r\n\t\|]*;[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*;R[+-]?[1-9][0-9]*/\d{4}-\d\d-\d\d[Tt]\d\d:\d\d(:\d\d(\.\d+)?([Zz]|[\+\-]\d\d:\d\d)?)?/\d{4}-\d\d-\d\d[Tt]\d\d:\d\d(:\d\d(\.\d+)?([Zz]|[\+\-]\d\d:\d\d)?)?/P(?=\d+[YMWD])(\d+Y)?(\d+M)?(\d+W)?(\d+D)?(T(?=\d+[HMS])(\d+H)?(\d+M)?(\d+S)?)?)\|)*[^s\|][^\r\n\t\|]*;[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)?
  [^s\|][^\r\n\t\|]*;R[+-]?[1-9][0-9]*/\d{4}-\d\d-\d\d[Tt]\d\d:\d\d(:\d\d(\.\d+)?([Zz]|[\+\-]\d\d:\d\d)?)?/\d{4}-\d\d-\d\d[Tt]\d\d:\d\d(:\d\d(\.\d+)?([Zz]|[\+\-]\d\d:\d\d)?)?/P(?=\d+[YMWD])(\d+Y)?(\d+M)?(\d+W)?(\d+D)?(T(?=\d+[HMS])(\d+H)?(\d+M)?(\d+S)?)?
structured_pattern:
  syntax: (({free_text};{float} {unit};R{integer}/{start_time}/{end_time}/{period})\|)*{free_text};{float}
    {unit};R{integer}/{start_time}/{end_time}/{period}