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Class: SymbiontAssociated

placeholder description; linter will ignore this

URI: MIXS:0016023

classDiagram class SymbiontAssociated EnvironmentalPackage <|-- SymbiontAssociated SymbiontAssociated : alt SymbiontAssociated : association_duration SymbiontAssociated : chem_administration SymbiontAssociated : collection_date SymbiontAssociated : elev SymbiontAssociated : env_broad_scale SymbiontAssociated : env_local_scale SymbiontAssociated : env_medium SymbiontAssociated : geo_loc_name SymbiontAssociated : gravidity SymbiontAssociated : host_age SymbiontAssociated : host_body_habitat SymbiontAssociated : host_body_site SymbiontAssociated : host_cellular_loc SymbiontAssociated : host_color SymbiontAssociated : host_common_name SymbiontAssociated : host_dependence SymbiontAssociated : host_dry_mass SymbiontAssociated : host_genotype SymbiontAssociated : host_growth_cond SymbiontAssociated : host_height SymbiontAssociated : host_infra_specific_name SymbiontAssociated : host_infra_specific_rank SymbiontAssociated : host_length SymbiontAssociated : host_life_stage SymbiontAssociated : host_number SymbiontAssociated : host_of_host_coinf SymbiontAssociated : host_of_host_disease SymbiontAssociated : host_of_host_env_loc SymbiontAssociated : host_of_host_env_med SymbiontAssociated : host_of_host_fam_rel SymbiontAssociated : host_of_host_geno SymbiontAssociated : host_of_host_gravid SymbiontAssociated : host_of_host_infname SymbiontAssociated : host_of_host_infrank SymbiontAssociated : host_of_host_name SymbiontAssociated : host_of_host_pheno SymbiontAssociated : host_of_host_sub_id SymbiontAssociated : host_of_host_taxid SymbiontAssociated : host_of_host_totmass SymbiontAssociated : host_phenotype SymbiontAssociated : host_shape SymbiontAssociated : host_specificity SymbiontAssociated : host_subject_id SymbiontAssociated : host_substrate SymbiontAssociated : host_taxid SymbiontAssociated : host_tot_mass SymbiontAssociated : lat_lon SymbiontAssociated : misc_param SymbiontAssociated : mode_transmission SymbiontAssociated : organism_count SymbiontAssociated : oxy_stat_samp SymbiontAssociated --|> OXY_STAT_SAMP_ENUM : oxy_stat_samp SymbiontAssociated : perturbation SymbiontAssociated : project_name SymbiontAssociated : route_transmission SymbiontAssociated : samp_salinity SymbiontAssociated : samp_store_dur SymbiontAssociated : samp_store_loc SymbiontAssociated : samp_store_sol SymbiontAssociated : samp_store_temp SymbiontAssociated : samp_vol_we_dna_ext SymbiontAssociated : source_mat_id SymbiontAssociated : sym_life_cycle_type SymbiontAssociated : symbiont_host_role SymbiontAssociated : temp SymbiontAssociated : type_of_symbiosis

Inheritance

Slots

Name Cardinality and Range Description Inheritance
alt 0..1 recommended
String		 placeholder description; linter will ignore this direct
elev 0..1 recommended
String		 placeholder description; linter will ignore this direct
host_cellular_loc 0..1 recommended
String		 placeholder description; linter will ignore this direct
host_specificity 0..1 recommended
String		 placeholder description; linter will ignore this direct
mode_transmission 0..1 recommended
String		 placeholder description; linter will ignore this direct
symbiont_host_role 0..1 recommended
String		 placeholder description; linter will ignore this direct
type_of_symbiosis 0..1 recommended
String		 placeholder description; linter will ignore this direct
association_duration 0..1
String		 placeholder description; linter will ignore this direct
chem_administration 0..1
String		 placeholder description; linter will ignore this direct
gravidity 0..1
String		 placeholder description; linter will ignore this direct
host_age 0..1
String		 placeholder description; linter will ignore this direct
host_body_habitat 0..1
String		 placeholder description; linter will ignore this direct
host_body_site 0..1
String		 placeholder description; linter will ignore this direct
host_color 0..1
String		 placeholder description; linter will ignore this direct
host_common_name 0..1
String		 placeholder description; linter will ignore this direct
host_dry_mass 0..1
String		 placeholder description; linter will ignore this direct
host_genotype 0..1
String		 placeholder description; linter will ignore this direct
host_growth_cond 0..1
String		 placeholder description; linter will ignore this direct
host_height 0..1
String		 placeholder description; linter will ignore this direct
host_infra_specific_name 0..1
String		 placeholder description; linter will ignore this direct
host_infra_specific_rank 0..1
String		 placeholder description; linter will ignore this direct
host_length 0..1
String		 placeholder description; linter will ignore this direct
host_number 0..1
String		 placeholder description; linter will ignore this direct
host_of_host_coinf 0..1
String		 placeholder description; linter will ignore this direct
host_of_host_disease 0..1
String		 placeholder description; linter will ignore this direct
host_of_host_env_loc 0..1
String		 placeholder description; linter will ignore this direct
host_of_host_env_med 0..1
String		 placeholder description; linter will ignore this direct
host_of_host_fam_rel 0..1
String		 placeholder description; linter will ignore this direct
host_of_host_geno 0..1
String		 placeholder description; linter will ignore this direct
host_of_host_gravid 0..1
String		 placeholder description; linter will ignore this direct
host_of_host_infname 0..1
String		 placeholder description; linter will ignore this direct
host_of_host_infrank 0..1
String		 placeholder description; linter will ignore this direct
host_of_host_name 0..1
String		 placeholder description; linter will ignore this direct
host_of_host_pheno 0..1
String		 placeholder description; linter will ignore this direct
host_of_host_sub_id 0..1
String		 placeholder description; linter will ignore this direct
host_of_host_taxid 0..1
Integer		 placeholder description; linter will ignore this direct
host_of_host_totmass 0..1
String		 placeholder description; linter will ignore this direct
host_phenotype 0..1
String		 placeholder description; linter will ignore this direct
host_shape 0..1
String		 placeholder description; linter will ignore this direct
host_subject_id 0..1
String		 placeholder description; linter will ignore this direct
host_substrate 0..1
String		 placeholder description; linter will ignore this direct
host_taxid 0..1
Integer		 placeholder description; linter will ignore this direct
host_tot_mass 0..1
String		 placeholder description; linter will ignore this direct
misc_param 0..1
String		 placeholder description; linter will ignore this direct
organism_count 0..1
String		 placeholder description; linter will ignore this direct
oxy_stat_samp 0..1
OXYSTATSAMPENUM		 placeholder description; linter will ignore this direct
perturbation 0..1
String		 placeholder description; linter will ignore this direct
route_transmission 0..1
String		 placeholder description; linter will ignore this direct
samp_salinity 0..1
String		 placeholder description; linter will ignore this direct
samp_store_dur 0..1
String		 placeholder description; linter will ignore this direct
samp_store_loc 0..1
String		 placeholder description; linter will ignore this direct
samp_store_sol 0..1
String		 placeholder description; linter will ignore this direct
samp_store_temp 0..1
String		 placeholder description; linter will ignore this direct
samp_vol_we_dna_ext 0..1
String		 placeholder description; linter will ignore this direct
source_mat_id 0..1
String		 placeholder description; linter will ignore this direct
temp 0..1
String		 placeholder description; linter will ignore this direct
collection_date 1..1
String		 placeholder description; linter will ignore this direct
env_broad_scale 1..1
String		 placeholder description; linter will ignore this direct
env_local_scale 1..1
String		 placeholder description; linter will ignore this direct
env_medium 1..1
String		 placeholder description; linter will ignore this direct
geo_loc_name 1..1
String		 placeholder description; linter will ignore this direct
host_dependence 1..1
String		 placeholder description; linter will ignore this direct
host_life_stage 1..1
String		 placeholder description; linter will ignore this direct
lat_lon 1..1
String		 placeholder description; linter will ignore this direct
project_name 1..1
String		 placeholder description; linter will ignore this direct
sym_life_cycle_type 1..1
String		 placeholder description; linter will ignore this direct

Identifier and Mapping Information

Schema Source

  • from schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first

Mappings

Mapping Type Mapped Value
self MIXS:0016023
native MIXS:SymbiontAssociated

LinkML Source

Direct

name: SymbiontAssociated
description: placeholder description; linter will ignore this
title: symbiont-associated
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
is_a: EnvironmentalPackage
slots:
- alt
- elev
- host_cellular_loc
- host_specificity
- mode_transmission
- symbiont_host_role
- type_of_symbiosis
- association_duration
- chem_administration
- gravidity
- host_age
- host_body_habitat
- host_body_site
- host_color
- host_common_name
- host_dry_mass
- host_genotype
- host_growth_cond
- host_height
- host_infra_specific_name
- host_infra_specific_rank
- host_length
- host_number
- host_of_host_coinf
- host_of_host_disease
- host_of_host_env_loc
- host_of_host_env_med
- host_of_host_fam_rel
- host_of_host_geno
- host_of_host_gravid
- host_of_host_infname
- host_of_host_infrank
- host_of_host_name
- host_of_host_pheno
- host_of_host_sub_id
- host_of_host_taxid
- host_of_host_totmass
- host_phenotype
- host_shape
- host_subject_id
- host_substrate
- host_taxid
- host_tot_mass
- misc_param
- organism_count
- oxy_stat_samp
- perturbation
- route_transmission
- samp_salinity
- samp_store_dur
- samp_store_loc
- samp_store_sol
- samp_store_temp
- samp_vol_we_dna_ext
- source_mat_id
- temp
- collection_date
- env_broad_scale
- env_local_scale
- env_medium
- geo_loc_name
- host_dependence
- host_life_stage
- lat_lon
- project_name
- sym_life_cycle_type
slot_usage:
  alt:
    name: alt
    domain_of:
    - Air
    - Checklist
    - HostAssociated
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - MiscellaneousNaturalOrArtificialEnvironment
    - Miuvig
    - SymbiontAssociated
    recommended: true
  association_duration:
    name: association_duration
    domain_of:
    - SymbiontAssociated
  chem_administration:
    name: chem_administration
    domain_of:
    - Agriculture
    - Air
    - FoodFarmEnvironment
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - PlantAssociated
    - Sediment
    - SymbiontAssociated
    - WastewaterSludge
    - Water
  collection_date:
    name: collection_date
    domain_of:
    - Checklist
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    - SymbiontAssociated
    required: true
  elev:
    name: elev
    domain_of:
    - Agriculture
    - Air
    - Checklist
    - HostAssociated
    - HydrocarbonResourcesCores
    - MicrobialMatBiofilm
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - MiscellaneousNaturalOrArtificialEnvironment
    - Miuvig
    - PlantAssociated
    - Sediment
    - Soil
    - SymbiontAssociated
    - Water
    recommended: true
  env_broad_scale:
    name: env_broad_scale
    domain_of:
    - Checklist
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    - SymbiontAssociated
    required: true
  env_local_scale:
    name: env_local_scale
    domain_of:
    - Checklist
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    - SymbiontAssociated
    required: true
  env_medium:
    name: env_medium
    domain_of:
    - Checklist
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    - SymbiontAssociated
    required: true
  geo_loc_name:
    name: geo_loc_name
    domain_of:
    - Checklist
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    - SymbiontAssociated
    required: true
  gravidity:
    name: gravidity
    domain_of:
    - HostAssociated
    - SymbiontAssociated
  host_age:
    name: host_age
    domain_of:
    - Agriculture
    - FoodFarmEnvironment
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - PlantAssociated
    - SymbiontAssociated
  host_body_habitat:
    name: host_body_habitat
    domain_of:
    - HostAssociated
    - SymbiontAssociated
  host_body_site:
    name: host_body_site
    domain_of:
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - SymbiontAssociated
  host_cellular_loc:
    name: host_cellular_loc
    domain_of:
    - SymbiontAssociated
    recommended: true
  host_color:
    name: host_color
    domain_of:
    - HostAssociated
    - SymbiontAssociated
  host_common_name:
    name: host_common_name
    domain_of:
    - Agriculture
    - HostAssociated
    - PlantAssociated
    - SymbiontAssociated
  host_dependence:
    name: host_dependence
    domain_of:
    - SymbiontAssociated
    required: true
  host_dry_mass:
    name: host_dry_mass
    domain_of:
    - Agriculture
    - FoodFarmEnvironment
    - HostAssociated
    - PlantAssociated
    - SymbiontAssociated
  host_genotype:
    name: host_genotype
    domain_of:
    - Agriculture
    - FoodFarmEnvironment
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - PlantAssociated
    - SymbiontAssociated
  host_growth_cond:
    name: host_growth_cond
    domain_of:
    - HostAssociated
    - SymbiontAssociated
  host_height:
    name: host_height
    domain_of:
    - Agriculture
    - FoodFarmEnvironment
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - PlantAssociated
    - SymbiontAssociated
  host_infra_specific_name:
    name: host_infra_specific_name
    domain_of:
    - SymbiontAssociated
  host_infra_specific_rank:
    name: host_infra_specific_rank
    domain_of:
    - SymbiontAssociated
  host_length:
    name: host_length
    domain_of:
    - Agriculture
    - FoodFarmEnvironment
    - HostAssociated
    - PlantAssociated
    - SymbiontAssociated
  host_life_stage:
    name: host_life_stage
    domain_of:
    - Agriculture
    - HostAssociated
    - PlantAssociated
    - SymbiontAssociated
    required: true
  host_number:
    name: host_number
    domain_of:
    - SymbiontAssociated
  host_of_host_coinf:
    name: host_of_host_coinf
    domain_of:
    - SymbiontAssociated
  host_of_host_disease:
    name: host_of_host_disease
    domain_of:
    - SymbiontAssociated
  host_of_host_env_loc:
    name: host_of_host_env_loc
    domain_of:
    - SymbiontAssociated
  host_of_host_env_med:
    name: host_of_host_env_med
    domain_of:
    - SymbiontAssociated
  host_of_host_fam_rel:
    name: host_of_host_fam_rel
    domain_of:
    - SymbiontAssociated
  host_of_host_geno:
    name: host_of_host_geno
    domain_of:
    - SymbiontAssociated
  host_of_host_gravid:
    name: host_of_host_gravid
    domain_of:
    - SymbiontAssociated
  host_of_host_infname:
    name: host_of_host_infname
    domain_of:
    - SymbiontAssociated
  host_of_host_infrank:
    name: host_of_host_infrank
    domain_of:
    - SymbiontAssociated
  host_of_host_name:
    name: host_of_host_name
    domain_of:
    - SymbiontAssociated
  host_of_host_pheno:
    name: host_of_host_pheno
    domain_of:
    - SymbiontAssociated
  host_of_host_sub_id:
    name: host_of_host_sub_id
    domain_of:
    - SymbiontAssociated
  host_of_host_taxid:
    name: host_of_host_taxid
    domain_of:
    - SymbiontAssociated
  host_of_host_totmass:
    name: host_of_host_totmass
    domain_of:
    - SymbiontAssociated
  host_phenotype:
    name: host_phenotype
    domain_of:
    - Agriculture
    - FoodFarmEnvironment
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - PlantAssociated
    - SymbiontAssociated
  host_shape:
    name: host_shape
    domain_of:
    - HostAssociated
    - SymbiontAssociated
  host_specificity:
    name: host_specificity
    domain_of:
    - SymbiontAssociated
    recommended: true
  host_subject_id:
    name: host_subject_id
    domain_of:
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - SymbiontAssociated
  host_substrate:
    name: host_substrate
    domain_of:
    - HostAssociated
    - SymbiontAssociated
  host_taxid:
    name: host_taxid
    domain_of:
    - Agriculture
    - FoodFarmEnvironment
    - HostAssociated
    - PlantAssociated
    - SymbiontAssociated
  host_tot_mass:
    name: host_tot_mass
    domain_of:
    - Agriculture
    - FoodFarmEnvironment
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - PlantAssociated
    - SymbiontAssociated
  lat_lon:
    name: lat_lon
    domain_of:
    - Checklist
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    - SymbiontAssociated
    required: true
  misc_param:
    name: misc_param
    domain_of:
    - Agriculture
    - Air
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - PlantAssociated
    - Sediment
    - Soil
    - SymbiontAssociated
    - WastewaterSludge
    - Water
  mode_transmission:
    name: mode_transmission
    domain_of:
    - SymbiontAssociated
    recommended: true
  organism_count:
    name: organism_count
    domain_of:
    - Agriculture
    - Air
    - BuiltEnvironment
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - PlantAssociated
    - Sediment
    - SymbiontAssociated
    - WastewaterSludge
    - Water
  oxy_stat_samp:
    name: oxy_stat_samp
    domain_of:
    - Agriculture
    - Air
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - PlantAssociated
    - Sediment
    - SymbiontAssociated
    - WastewaterSludge
    - Water
  perturbation:
    name: perturbation
    domain_of:
    - Agriculture
    - Air
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodHumanFoods
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - PlantAssociated
    - Sediment
    - SymbiontAssociated
    - WastewaterSludge
    - Water
  project_name:
    name: project_name
    domain_of:
    - Air
    - BuiltEnvironment
    - Checklist
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - MiscellaneousNaturalOrArtificialEnvironment
    - Miuvig
    - PlantAssociated
    - Sediment
    - Soil
    - SymbiontAssociated
    - WastewaterSludge
    - Water
    required: true
  route_transmission:
    name: route_transmission
    domain_of:
    - SymbiontAssociated
  samp_salinity:
    name: samp_salinity
    domain_of:
    - HumanVaginal
    - SymbiontAssociated
  samp_store_dur:
    name: samp_store_dur
    domain_of:
    - Agriculture
    - Air
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - PlantAssociated
    - Sediment
    - SymbiontAssociated
    - WastewaterSludge
    - Water
  samp_store_loc:
    name: samp_store_loc
    domain_of:
    - Agriculture
    - Air
    - FoodAnimalAndAnimalFeed
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - PlantAssociated
    - Sediment
    - SymbiontAssociated
    - WastewaterSludge
    - Water
  samp_store_sol:
    name: samp_store_sol
    domain_of:
    - SymbiontAssociated
  samp_store_temp:
    name: samp_store_temp
    domain_of:
    - Agriculture
    - Air
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - PlantAssociated
    - Sediment
    - SymbiontAssociated
    - WastewaterSludge
    - Water
  samp_vol_we_dna_ext:
    name: samp_vol_we_dna_ext
    domain_of:
    - Agriculture
    - Air
    - Checklist
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - MiscellaneousNaturalOrArtificialEnvironment
    - Miuvig
    - PlantAssociated
    - Sediment
    - Soil
    - SymbiontAssociated
    - WastewaterSludge
    - Water
  source_mat_id:
    name: source_mat_id
    domain_of:
    - Agriculture
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    - SymbiontAssociated
  sym_life_cycle_type:
    name: sym_life_cycle_type
    domain_of:
    - SymbiontAssociated
    required: true
  symbiont_host_role:
    name: symbiont_host_role
    domain_of:
    - SymbiontAssociated
    recommended: true
  temp:
    name: temp
    domain_of:
    - Agriculture
    - Air
    - Checklist
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodHumanFoods
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - MiscellaneousNaturalOrArtificialEnvironment
    - Miuvig
    - PlantAssociated
    - Sediment
    - Soil
    - SymbiontAssociated
    - WastewaterSludge
    - Water
  type_of_symbiosis:
    name: type_of_symbiosis
    domain_of:
    - SymbiontAssociated
    recommended: true
class_uri: MIXS:0016023

Induced

name: SymbiontAssociated
description: placeholder description; linter will ignore this
title: symbiont-associated
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
is_a: EnvironmentalPackage
slot_usage:
  alt:
    name: alt
    domain_of:
    - Air
    - Checklist
    - HostAssociated
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - MiscellaneousNaturalOrArtificialEnvironment
    - Miuvig
    - SymbiontAssociated
    recommended: true
  association_duration:
    name: association_duration
    domain_of:
    - SymbiontAssociated
  chem_administration:
    name: chem_administration
    domain_of:
    - Agriculture
    - Air
    - FoodFarmEnvironment
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - PlantAssociated
    - Sediment
    - SymbiontAssociated
    - WastewaterSludge
    - Water
  collection_date:
    name: collection_date
    domain_of:
    - Checklist
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    - SymbiontAssociated
    required: true
  elev:
    name: elev
    domain_of:
    - Agriculture
    - Air
    - Checklist
    - HostAssociated
    - HydrocarbonResourcesCores
    - MicrobialMatBiofilm
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - MiscellaneousNaturalOrArtificialEnvironment
    - Miuvig
    - PlantAssociated
    - Sediment
    - Soil
    - SymbiontAssociated
    - Water
    recommended: true
  env_broad_scale:
    name: env_broad_scale
    domain_of:
    - Checklist
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    - SymbiontAssociated
    required: true
  env_local_scale:
    name: env_local_scale
    domain_of:
    - Checklist
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    - SymbiontAssociated
    required: true
  env_medium:
    name: env_medium
    domain_of:
    - Checklist
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    - SymbiontAssociated
    required: true
  geo_loc_name:
    name: geo_loc_name
    domain_of:
    - Checklist
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    - SymbiontAssociated
    required: true
  gravidity:
    name: gravidity
    domain_of:
    - HostAssociated
    - SymbiontAssociated
  host_age:
    name: host_age
    domain_of:
    - Agriculture
    - FoodFarmEnvironment
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - PlantAssociated
    - SymbiontAssociated
  host_body_habitat:
    name: host_body_habitat
    domain_of:
    - HostAssociated
    - SymbiontAssociated
  host_body_site:
    name: host_body_site
    domain_of:
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - SymbiontAssociated
  host_cellular_loc:
    name: host_cellular_loc
    domain_of:
    - SymbiontAssociated
    recommended: true
  host_color:
    name: host_color
    domain_of:
    - HostAssociated
    - SymbiontAssociated
  host_common_name:
    name: host_common_name
    domain_of:
    - Agriculture
    - HostAssociated
    - PlantAssociated
    - SymbiontAssociated
  host_dependence:
    name: host_dependence
    domain_of:
    - SymbiontAssociated
    required: true
  host_dry_mass:
    name: host_dry_mass
    domain_of:
    - Agriculture
    - FoodFarmEnvironment
    - HostAssociated
    - PlantAssociated
    - SymbiontAssociated
  host_genotype:
    name: host_genotype
    domain_of:
    - Agriculture
    - FoodFarmEnvironment
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - PlantAssociated
    - SymbiontAssociated
  host_growth_cond:
    name: host_growth_cond
    domain_of:
    - HostAssociated
    - SymbiontAssociated
  host_height:
    name: host_height
    domain_of:
    - Agriculture
    - FoodFarmEnvironment
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - PlantAssociated
    - SymbiontAssociated
  host_infra_specific_name:
    name: host_infra_specific_name
    domain_of:
    - SymbiontAssociated
  host_infra_specific_rank:
    name: host_infra_specific_rank
    domain_of:
    - SymbiontAssociated
  host_length:
    name: host_length
    domain_of:
    - Agriculture
    - FoodFarmEnvironment
    - HostAssociated
    - PlantAssociated
    - SymbiontAssociated
  host_life_stage:
    name: host_life_stage
    domain_of:
    - Agriculture
    - HostAssociated
    - PlantAssociated
    - SymbiontAssociated
    required: true
  host_number:
    name: host_number
    domain_of:
    - SymbiontAssociated
  host_of_host_coinf:
    name: host_of_host_coinf
    domain_of:
    - SymbiontAssociated
  host_of_host_disease:
    name: host_of_host_disease
    domain_of:
    - SymbiontAssociated
  host_of_host_env_loc:
    name: host_of_host_env_loc
    domain_of:
    - SymbiontAssociated
  host_of_host_env_med:
    name: host_of_host_env_med
    domain_of:
    - SymbiontAssociated
  host_of_host_fam_rel:
    name: host_of_host_fam_rel
    domain_of:
    - SymbiontAssociated
  host_of_host_geno:
    name: host_of_host_geno
    domain_of:
    - SymbiontAssociated
  host_of_host_gravid:
    name: host_of_host_gravid
    domain_of:
    - SymbiontAssociated
  host_of_host_infname:
    name: host_of_host_infname
    domain_of:
    - SymbiontAssociated
  host_of_host_infrank:
    name: host_of_host_infrank
    domain_of:
    - SymbiontAssociated
  host_of_host_name:
    name: host_of_host_name
    domain_of:
    - SymbiontAssociated
  host_of_host_pheno:
    name: host_of_host_pheno
    domain_of:
    - SymbiontAssociated
  host_of_host_sub_id:
    name: host_of_host_sub_id
    domain_of:
    - SymbiontAssociated
  host_of_host_taxid:
    name: host_of_host_taxid
    domain_of:
    - SymbiontAssociated
  host_of_host_totmass:
    name: host_of_host_totmass
    domain_of:
    - SymbiontAssociated
  host_phenotype:
    name: host_phenotype
    domain_of:
    - Agriculture
    - FoodFarmEnvironment
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - PlantAssociated
    - SymbiontAssociated
  host_shape:
    name: host_shape
    domain_of:
    - HostAssociated
    - SymbiontAssociated
  host_specificity:
    name: host_specificity
    domain_of:
    - SymbiontAssociated
    recommended: true
  host_subject_id:
    name: host_subject_id
    domain_of:
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - SymbiontAssociated
  host_substrate:
    name: host_substrate
    domain_of:
    - HostAssociated
    - SymbiontAssociated
  host_taxid:
    name: host_taxid
    domain_of:
    - Agriculture
    - FoodFarmEnvironment
    - HostAssociated
    - PlantAssociated
    - SymbiontAssociated
  host_tot_mass:
    name: host_tot_mass
    domain_of:
    - Agriculture
    - FoodFarmEnvironment
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - PlantAssociated
    - SymbiontAssociated
  lat_lon:
    name: lat_lon
    domain_of:
    - Checklist
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    - SymbiontAssociated
    required: true
  misc_param:
    name: misc_param
    domain_of:
    - Agriculture
    - Air
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - PlantAssociated
    - Sediment
    - Soil
    - SymbiontAssociated
    - WastewaterSludge
    - Water
  mode_transmission:
    name: mode_transmission
    domain_of:
    - SymbiontAssociated
    recommended: true
  organism_count:
    name: organism_count
    domain_of:
    - Agriculture
    - Air
    - BuiltEnvironment
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - PlantAssociated
    - Sediment
    - SymbiontAssociated
    - WastewaterSludge
    - Water
  oxy_stat_samp:
    name: oxy_stat_samp
    domain_of:
    - Agriculture
    - Air
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - PlantAssociated
    - Sediment
    - SymbiontAssociated
    - WastewaterSludge
    - Water
  perturbation:
    name: perturbation
    domain_of:
    - Agriculture
    - Air
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodHumanFoods
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - PlantAssociated
    - Sediment
    - SymbiontAssociated
    - WastewaterSludge
    - Water
  project_name:
    name: project_name
    domain_of:
    - Air
    - BuiltEnvironment
    - Checklist
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - MiscellaneousNaturalOrArtificialEnvironment
    - Miuvig
    - PlantAssociated
    - Sediment
    - Soil
    - SymbiontAssociated
    - WastewaterSludge
    - Water
    required: true
  route_transmission:
    name: route_transmission
    domain_of:
    - SymbiontAssociated
  samp_salinity:
    name: samp_salinity
    domain_of:
    - HumanVaginal
    - SymbiontAssociated
  samp_store_dur:
    name: samp_store_dur
    domain_of:
    - Agriculture
    - Air
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - PlantAssociated
    - Sediment
    - SymbiontAssociated
    - WastewaterSludge
    - Water
  samp_store_loc:
    name: samp_store_loc
    domain_of:
    - Agriculture
    - Air
    - FoodAnimalAndAnimalFeed
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - PlantAssociated
    - Sediment
    - SymbiontAssociated
    - WastewaterSludge
    - Water
  samp_store_sol:
    name: samp_store_sol
    domain_of:
    - SymbiontAssociated
  samp_store_temp:
    name: samp_store_temp
    domain_of:
    - Agriculture
    - Air
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - PlantAssociated
    - Sediment
    - SymbiontAssociated
    - WastewaterSludge
    - Water
  samp_vol_we_dna_ext:
    name: samp_vol_we_dna_ext
    domain_of:
    - Agriculture
    - Air
    - Checklist
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - MiscellaneousNaturalOrArtificialEnvironment
    - Miuvig
    - PlantAssociated
    - Sediment
    - Soil
    - SymbiontAssociated
    - WastewaterSludge
    - Water
  source_mat_id:
    name: source_mat_id
    domain_of:
    - Agriculture
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    - SymbiontAssociated
  sym_life_cycle_type:
    name: sym_life_cycle_type
    domain_of:
    - SymbiontAssociated
    required: true
  symbiont_host_role:
    name: symbiont_host_role
    domain_of:
    - SymbiontAssociated
    recommended: true
  temp:
    name: temp
    domain_of:
    - Agriculture
    - Air
    - Checklist
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodHumanFoods
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - MiscellaneousNaturalOrArtificialEnvironment
    - Miuvig
    - PlantAssociated
    - Sediment
    - Soil
    - SymbiontAssociated
    - WastewaterSludge
    - Water
  type_of_symbiosis:
    name: type_of_symbiosis
    domain_of:
    - SymbiontAssociated
    recommended: true
attributes:
  alt:
    name: alt
    description: placeholder description; linter will ignore this
    title: altitude
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000094
    alias: alt
    owner: SymbiontAssociated
    domain_of:
    - Air
    - Checklist
    - HostAssociated
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - MiscellaneousNaturalOrArtificialEnvironment
    - Miuvig
    - SymbiontAssociated
    range: string
    recommended: true
    pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{float} {unit}'
  elev:
    name: elev
    description: placeholder description; linter will ignore this
    title: elevation
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000093
    alias: elev
    owner: SymbiontAssociated
    domain_of:
    - Agriculture
    - Air
    - Checklist
    - HostAssociated
    - HydrocarbonResourcesCores
    - MicrobialMatBiofilm
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - MiscellaneousNaturalOrArtificialEnvironment
    - Miuvig
    - PlantAssociated
    - Sediment
    - Soil
    - SymbiontAssociated
    - Water
    range: string
    recommended: true
    pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{float} {unit}'
  host_cellular_loc:
    name: host_cellular_loc
    description: placeholder description; linter will ignore this
    title: host cellular location
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0001313
    alias: host_cellular_loc
    owner: SymbiontAssociated
    domain_of:
    - SymbiontAssociated
    range: string
    recommended: true
  host_specificity:
    name: host_specificity
    description: placeholder description; linter will ignore this
    title: host specificity
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0001308
    alias: host_specificity
    owner: SymbiontAssociated
    domain_of:
    - SymbiontAssociated
    range: string
    recommended: true
  mode_transmission:
    name: mode_transmission
    description: placeholder description; linter will ignore this
    title: mode of transmission
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0001312
    alias: mode_transmission
    owner: SymbiontAssociated
    domain_of:
    - SymbiontAssociated
    range: string
    recommended: true
  symbiont_host_role:
    name: symbiont_host_role
    description: placeholder description; linter will ignore this
    title: host of the symbiont role
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0001303
    alias: symbiont_host_role
    owner: SymbiontAssociated
    domain_of:
    - SymbiontAssociated
    range: string
    recommended: true
  type_of_symbiosis:
    name: type_of_symbiosis
    description: placeholder description; linter will ignore this
    title: type of symbiosis
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0001307
    alias: type_of_symbiosis
    owner: SymbiontAssociated
    domain_of:
    - SymbiontAssociated
    range: string
    recommended: true
  association_duration:
    name: association_duration
    description: placeholder description; linter will ignore this
    title: duration of association with the host
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0001299
    alias: association_duration
    owner: SymbiontAssociated
    domain_of:
    - SymbiontAssociated
    range: string
    pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{float} {unit}'
  chem_administration:
    name: chem_administration
    description: placeholder description; linter will ignore this
    title: chemical administration
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000751
    alias: chem_administration
    owner: SymbiontAssociated
    domain_of:
    - Agriculture
    - Air
    - FoodFarmEnvironment
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - PlantAssociated
    - Sediment
    - SymbiontAssociated
    - WastewaterSludge
    - Water
    range: string
  gravidity:
    name: gravidity
    description: placeholder description; linter will ignore this
    title: gravidity
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000875
    alias: gravidity
    owner: SymbiontAssociated
    domain_of:
    - HostAssociated
    - SymbiontAssociated
    range: string
  host_age:
    name: host_age
    description: placeholder description; linter will ignore this
    title: host age
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000255
    alias: host_age
    owner: SymbiontAssociated
    domain_of:
    - Agriculture
    - FoodFarmEnvironment
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - PlantAssociated
    - SymbiontAssociated
    range: string
    pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{float} {unit}'
  host_body_habitat:
    name: host_body_habitat
    description: placeholder description; linter will ignore this
    title: host body habitat
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000866
    alias: host_body_habitat
    owner: SymbiontAssociated
    domain_of:
    - HostAssociated
    - SymbiontAssociated
    range: string
    pattern: '[^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{free_text}'
  host_body_site:
    name: host_body_site
    description: placeholder description; linter will ignore this
    title: host body site
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000867
    alias: host_body_site
    owner: SymbiontAssociated
    domain_of:
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - SymbiontAssociated
    range: string
    pattern: '[^s\|][^\r\n\t\|]* [[a-zA-Z]+:[0-9]+]'
    structured_pattern:
      syntax: '{term_label} [{term_id}]'
  host_color:
    name: host_color
    description: placeholder description; linter will ignore this
    title: host color
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000260
    alias: host_color
    owner: SymbiontAssociated
    domain_of:
    - HostAssociated
    - SymbiontAssociated
    range: string
    pattern: '[^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{free_text}'
  host_common_name:
    name: host_common_name
    description: placeholder description; linter will ignore this
    title: host common name
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000248
    alias: host_common_name
    owner: SymbiontAssociated
    domain_of:
    - Agriculture
    - HostAssociated
    - PlantAssociated
    - SymbiontAssociated
    range: string
    pattern: '[^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{free_text}'
  host_dry_mass:
    name: host_dry_mass
    description: placeholder description; linter will ignore this
    title: host dry mass
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000257
    alias: host_dry_mass
    owner: SymbiontAssociated
    domain_of:
    - Agriculture
    - FoodFarmEnvironment
    - HostAssociated
    - PlantAssociated
    - SymbiontAssociated
    range: string
    pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{float} {unit}'
  host_genotype:
    name: host_genotype
    description: placeholder description; linter will ignore this
    title: host genotype
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000365
    alias: host_genotype
    owner: SymbiontAssociated
    domain_of:
    - Agriculture
    - FoodFarmEnvironment
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - PlantAssociated
    - SymbiontAssociated
    range: string
    pattern: '[^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{free_text}'
  host_growth_cond:
    name: host_growth_cond
    description: placeholder description; linter will ignore this
    title: host growth conditions
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000871
    alias: host_growth_cond
    owner: SymbiontAssociated
    domain_of:
    - HostAssociated
    - SymbiontAssociated
    range: string
  host_height:
    name: host_height
    description: placeholder description; linter will ignore this
    title: host height
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000264
    alias: host_height
    owner: SymbiontAssociated
    domain_of:
    - Agriculture
    - FoodFarmEnvironment
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - PlantAssociated
    - SymbiontAssociated
    range: string
    pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{float} {unit}'
  host_infra_specific_name:
    name: host_infra_specific_name
    description: placeholder description; linter will ignore this
    title: host infra-specific name
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000253
    alias: host_infra_specific_name
    owner: SymbiontAssociated
    domain_of:
    - SymbiontAssociated
    range: string
    pattern: '[^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{free_text}'
  host_infra_specific_rank:
    name: host_infra_specific_rank
    description: placeholder description; linter will ignore this
    title: host infra-specific rank
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000254
    alias: host_infra_specific_rank
    owner: SymbiontAssociated
    domain_of:
    - SymbiontAssociated
    range: string
    pattern: '[^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{free_text}'
  host_length:
    name: host_length
    description: placeholder description; linter will ignore this
    title: host length
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000256
    alias: host_length
    owner: SymbiontAssociated
    domain_of:
    - Agriculture
    - FoodFarmEnvironment
    - HostAssociated
    - PlantAssociated
    - SymbiontAssociated
    range: string
    pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{float} {unit}'
  host_number:
    name: host_number
    description: placeholder description; linter will ignore this
    title: host number individual
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0001305
    alias: host_number
    owner: SymbiontAssociated
    domain_of:
    - SymbiontAssociated
    range: string
  host_of_host_coinf:
    name: host_of_host_coinf
    description: placeholder description; linter will ignore this
    title: observed coinfecting organisms in host of host
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0001310
    alias: host_of_host_coinf
    owner: SymbiontAssociated
    domain_of:
    - SymbiontAssociated
    range: string
    pattern: '[^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{free_text}'
  host_of_host_disease:
    name: host_of_host_disease
    description: placeholder description; linter will ignore this
    title: host of the symbiotic host disease status
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0001319
    alias: host_of_host_disease
    owner: SymbiontAssociated
    domain_of:
    - SymbiontAssociated
    range: string
  host_of_host_env_loc:
    name: host_of_host_env_loc
    description: placeholder description; linter will ignore this
    title: host of the symbiotic host local environmental context
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0001325
    alias: host_of_host_env_loc
    owner: SymbiontAssociated
    domain_of:
    - SymbiontAssociated
    range: string
    pattern: '[^s\|][^\r\n\t\|]* [[a-zA-Z]+:[0-9]+]'
    structured_pattern:
      syntax: '{term_label} [{term_id}]'
  host_of_host_env_med:
    name: host_of_host_env_med
    description: placeholder description; linter will ignore this
    title: host of the symbiotic host environmental medium
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0001326
    alias: host_of_host_env_med
    owner: SymbiontAssociated
    domain_of:
    - SymbiontAssociated
    range: string
    pattern: '[^s\|][^\r\n\t\|]* [[a-zA-Z]+:[0-9]+]'
    structured_pattern:
      syntax: '{term_label} [{term_id}]'
  host_of_host_fam_rel:
    name: host_of_host_fam_rel
    description: placeholder description; linter will ignore this
    title: host of the symbiotic host family relationship
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0001328
    alias: host_of_host_fam_rel
    owner: SymbiontAssociated
    domain_of:
    - SymbiontAssociated
    range: string
  host_of_host_geno:
    name: host_of_host_geno
    description: placeholder description; linter will ignore this
    title: host of the symbiotic host genotype
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0001331
    alias: host_of_host_geno
    owner: SymbiontAssociated
    domain_of:
    - SymbiontAssociated
    range: string
    pattern: '[^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{free_text}'
  host_of_host_gravid:
    name: host_of_host_gravid
    description: placeholder description; linter will ignore this
    title: host of the symbiotic host gravidity
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0001333
    alias: host_of_host_gravid
    owner: SymbiontAssociated
    domain_of:
    - SymbiontAssociated
    range: string
  host_of_host_infname:
    name: host_of_host_infname
    description: placeholder description; linter will ignore this
    title: host of the symbiotic host infra-specific name
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0001329
    alias: host_of_host_infname
    owner: SymbiontAssociated
    domain_of:
    - SymbiontAssociated
    range: string
    pattern: '[^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{free_text}'
  host_of_host_infrank:
    name: host_of_host_infrank
    description: placeholder description; linter will ignore this
    title: host of the symbiotic host infra-specific rank
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0001330
    alias: host_of_host_infrank
    owner: SymbiontAssociated
    domain_of:
    - SymbiontAssociated
    range: string
    pattern: '[^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{free_text}'
  host_of_host_name:
    name: host_of_host_name
    description: placeholder description; linter will ignore this
    title: host of the symbiotic host common name
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0001324
    alias: host_of_host_name
    owner: SymbiontAssociated
    domain_of:
    - SymbiontAssociated
    range: string
    pattern: '[^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{free_text}'
  host_of_host_pheno:
    name: host_of_host_pheno
    description: placeholder description; linter will ignore this
    title: host of the symbiotic host phenotype
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0001332
    alias: host_of_host_pheno
    owner: SymbiontAssociated
    domain_of:
    - SymbiontAssociated
    range: string
  host_of_host_sub_id:
    name: host_of_host_sub_id
    description: placeholder description; linter will ignore this
    title: host of the symbiotic host subject id
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0001327
    alias: host_of_host_sub_id
    owner: SymbiontAssociated
    domain_of:
    - SymbiontAssociated
    range: string
    pattern: '[^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{free_text}'
  host_of_host_taxid:
    name: host_of_host_taxid
    description: placeholder description; linter will ignore this
    title: host of the symbiotic host taxon id
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0001306
    alias: host_of_host_taxid
    owner: SymbiontAssociated
    domain_of:
    - SymbiontAssociated
    range: integer
  host_of_host_totmass:
    name: host_of_host_totmass
    description: placeholder description; linter will ignore this
    title: host of the symbiotic host total mass
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0001334
    alias: host_of_host_totmass
    owner: SymbiontAssociated
    domain_of:
    - SymbiontAssociated
    range: string
    pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{float} {unit}'
  host_phenotype:
    name: host_phenotype
    description: placeholder description; linter will ignore this
    title: host phenotype
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000874
    alias: host_phenotype
    owner: SymbiontAssociated
    domain_of:
    - Agriculture
    - FoodFarmEnvironment
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - PlantAssociated
    - SymbiontAssociated
    range: string
    pattern: '[^s\|][^\r\n\t\|]* [[a-zA-Z]+:[0-9]+]'
    structured_pattern:
      syntax: '{term_label} [{term_id}]'
  host_shape:
    name: host_shape
    description: placeholder description; linter will ignore this
    title: host shape
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000261
    alias: host_shape
    owner: SymbiontAssociated
    domain_of:
    - HostAssociated
    - SymbiontAssociated
    range: string
    pattern: '[^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{free_text}'
  host_subject_id:
    name: host_subject_id
    description: placeholder description; linter will ignore this
    title: host subject id
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000861
    alias: host_subject_id
    owner: SymbiontAssociated
    domain_of:
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - SymbiontAssociated
    range: string
    pattern: '[^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{free_text}'
  host_substrate:
    name: host_substrate
    description: placeholder description; linter will ignore this
    title: host substrate
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000252
    alias: host_substrate
    owner: SymbiontAssociated
    domain_of:
    - HostAssociated
    - SymbiontAssociated
    range: string
    pattern: '[^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{free_text}'
  host_taxid:
    name: host_taxid
    description: placeholder description; linter will ignore this
    title: host taxid
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000250
    alias: host_taxid
    owner: SymbiontAssociated
    domain_of:
    - Agriculture
    - FoodFarmEnvironment
    - HostAssociated
    - PlantAssociated
    - SymbiontAssociated
    range: integer
  host_tot_mass:
    name: host_tot_mass
    description: placeholder description; linter will ignore this
    title: host total mass
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000263
    alias: host_tot_mass
    owner: SymbiontAssociated
    domain_of:
    - Agriculture
    - FoodFarmEnvironment
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - PlantAssociated
    - SymbiontAssociated
    range: string
    pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{float} {unit}'
  misc_param:
    name: misc_param
    description: placeholder description; linter will ignore this
    title: miscellaneous parameter
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000752
    alias: misc_param
    owner: SymbiontAssociated
    domain_of:
    - Agriculture
    - Air
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - PlantAssociated
    - Sediment
    - Soil
    - SymbiontAssociated
    - WastewaterSludge
    - Water
    range: string
    pattern: (([^s\|][^\r\n\t\|]*;[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*)\\|)*([^s\|][^\r\n\t\|]*;[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)?
      [^s\|][^\r\n\t\|]*)
    structured_pattern:
      syntax: (({free_text};{float} {unit})\\|)*({free_text};{float} {unit})
  organism_count:
    name: organism_count
    description: placeholder description; linter will ignore this
    title: organism count
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000103
    alias: organism_count
    owner: SymbiontAssociated
    domain_of:
    - Agriculture
    - Air
    - BuiltEnvironment
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - PlantAssociated
    - Sediment
    - SymbiontAssociated
    - WastewaterSludge
    - Water
    range: string
  oxy_stat_samp:
    name: oxy_stat_samp
    description: placeholder description; linter will ignore this
    title: oxygenation status of sample
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000753
    alias: oxy_stat_samp
    owner: SymbiontAssociated
    domain_of:
    - Agriculture
    - Air
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - PlantAssociated
    - Sediment
    - SymbiontAssociated
    - WastewaterSludge
    - Water
    range: OXY_STAT_SAMP_ENUM
  perturbation:
    name: perturbation
    description: placeholder description; linter will ignore this
    title: perturbation
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000754
    alias: perturbation
    owner: SymbiontAssociated
    domain_of:
    - Agriculture
    - Air
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodHumanFoods
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - PlantAssociated
    - Sediment
    - SymbiontAssociated
    - WastewaterSludge
    - Water
    range: string
  route_transmission:
    name: route_transmission
    description: placeholder description; linter will ignore this
    title: route of transmission
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0001316
    alias: route_transmission
    owner: SymbiontAssociated
    domain_of:
    - SymbiontAssociated
    range: string
  samp_salinity:
    name: samp_salinity
    description: placeholder description; linter will ignore this
    title: sample salinity
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000109
    alias: samp_salinity
    owner: SymbiontAssociated
    domain_of:
    - HumanVaginal
    - SymbiontAssociated
    range: string
    pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{float} {unit}'
  samp_store_dur:
    name: samp_store_dur
    description: placeholder description; linter will ignore this
    title: sample storage duration
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000116
    alias: samp_store_dur
    owner: SymbiontAssociated
    domain_of:
    - Agriculture
    - Air
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - PlantAssociated
    - Sediment
    - SymbiontAssociated
    - WastewaterSludge
    - Water
    range: string
    pattern: P(?=\d+[YMWD])(\d+Y)?(\d+M)?(\d+W)?(\d+D)?(T(?=\d+[HMS])(\d+H)?(\d+M)?(\d+S)?)?
    structured_pattern:
      syntax: '{period}'
  samp_store_loc:
    name: samp_store_loc
    description: placeholder description; linter will ignore this
    title: sample storage location
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000755
    alias: samp_store_loc
    owner: SymbiontAssociated
    domain_of:
    - Agriculture
    - Air
    - FoodAnimalAndAnimalFeed
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - PlantAssociated
    - Sediment
    - SymbiontAssociated
    - WastewaterSludge
    - Water
    range: string
    pattern: '[^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{free_text}'
  samp_store_sol:
    name: samp_store_sol
    description: placeholder description; linter will ignore this
    title: sample storage solution
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0001317
    alias: samp_store_sol
    owner: SymbiontAssociated
    domain_of:
    - SymbiontAssociated
    range: string
    pattern: '[^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{free_text}'
  samp_store_temp:
    name: samp_store_temp
    description: placeholder description; linter will ignore this
    title: sample storage temperature
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000110
    alias: samp_store_temp
    owner: SymbiontAssociated
    domain_of:
    - Agriculture
    - Air
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - PlantAssociated
    - Sediment
    - SymbiontAssociated
    - WastewaterSludge
    - Water
    range: string
    pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{float} {unit}'
  samp_vol_we_dna_ext:
    name: samp_vol_we_dna_ext
    description: placeholder description; linter will ignore this
    title: sample volume or weight for DNA extraction
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000111
    alias: samp_vol_we_dna_ext
    owner: SymbiontAssociated
    domain_of:
    - Agriculture
    - Air
    - Checklist
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - MiscellaneousNaturalOrArtificialEnvironment
    - Miuvig
    - PlantAssociated
    - Sediment
    - Soil
    - SymbiontAssociated
    - WastewaterSludge
    - Water
    range: string
    pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{float} {unit}'
  source_mat_id:
    name: source_mat_id
    description: placeholder description; linter will ignore this
    title: source material identifiers
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000026
    alias: source_mat_id
    owner: SymbiontAssociated
    domain_of:
    - Agriculture
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    - SymbiontAssociated
    range: string
    pattern: '[^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{free_text}'
  temp:
    name: temp
    description: placeholder description; linter will ignore this
    title: temperature
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000113
    alias: temp
    owner: SymbiontAssociated
    domain_of:
    - Agriculture
    - Air
    - Checklist
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodHumanFoods
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - MiscellaneousNaturalOrArtificialEnvironment
    - Miuvig
    - PlantAssociated
    - Sediment
    - Soil
    - SymbiontAssociated
    - WastewaterSludge
    - Water
    range: string
    pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{float} {unit}'
  collection_date:
    name: collection_date
    description: placeholder description; linter will ignore this
    title: collection date
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000011
    alias: collection_date
    owner: SymbiontAssociated
    domain_of:
    - Checklist
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    - SymbiontAssociated
    range: string
    required: true
  env_broad_scale:
    name: env_broad_scale
    description: placeholder description; linter will ignore this
    title: broad-scale environmental context
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000012
    alias: env_broad_scale
    owner: SymbiontAssociated
    domain_of:
    - Checklist
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    - SymbiontAssociated
    range: string
    required: true
    pattern: '[^s\|][^\r\n\t\|]* [[a-zA-Z]+:[0-9]+]'
    structured_pattern:
      syntax: '{term_label} [{term_id}]'
  env_local_scale:
    name: env_local_scale
    description: placeholder description; linter will ignore this
    title: local environmental context
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000013
    alias: env_local_scale
    owner: SymbiontAssociated
    domain_of:
    - Checklist
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    - SymbiontAssociated
    range: string
    required: true
    pattern: '[^s\|][^\r\n\t\|]* [[a-zA-Z]+:[0-9]+]'
    structured_pattern:
      syntax: '{term_label} [{term_id}]'
  env_medium:
    name: env_medium
    description: placeholder description; linter will ignore this
    title: environmental medium
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000014
    alias: env_medium
    owner: SymbiontAssociated
    domain_of:
    - Checklist
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    - SymbiontAssociated
    range: string
    required: true
    pattern: '[^s\|][^\r\n\t\|]* [[a-zA-Z]+:[0-9]+]'
    structured_pattern:
      syntax: '{term_label} [{term_id}]'
  geo_loc_name:
    name: geo_loc_name
    description: placeholder description; linter will ignore this
    title: geographic location (country and/or sea,region)
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000010
    alias: geo_loc_name
    owner: SymbiontAssociated
    domain_of:
    - Checklist
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    - SymbiontAssociated
    range: string
    required: true
    pattern: '[^s\|][^\r\n\t\|]*: [^s\|][^\r\n\t\|]*, [^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{term}: {term}, {free_text}'
  host_dependence:
    name: host_dependence
    description: placeholder description; linter will ignore this
    title: host dependence
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0001315
    alias: host_dependence
    owner: SymbiontAssociated
    domain_of:
    - SymbiontAssociated
    range: string
    required: true
  host_life_stage:
    name: host_life_stage
    description: placeholder description; linter will ignore this
    title: host life stage
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000251
    alias: host_life_stage
    owner: SymbiontAssociated
    domain_of:
    - Agriculture
    - HostAssociated
    - PlantAssociated
    - SymbiontAssociated
    range: string
    required: true
    pattern: '[^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{free_text}'
  lat_lon:
    name: lat_lon
    description: placeholder description; linter will ignore this
    title: geographic location (latitude and longitude)
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000009
    alias: lat_lon
    owner: SymbiontAssociated
    domain_of:
    - Checklist
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    - SymbiontAssociated
    range: string
    required: true
    pattern: '[-+]?([1-8]?\d(\.\d+)?|90(\.0+)?) [-+]?(180(\.0+)?|((1[0-7]\d)|([1-9]?\d))(\.\d+)?)'
    structured_pattern:
      syntax: '{lat} {lon}'
  project_name:
    name: project_name
    description: placeholder description; linter will ignore this
    title: project name
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000092
    alias: project_name
    owner: SymbiontAssociated
    domain_of:
    - Air
    - BuiltEnvironment
    - Checklist
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - MiscellaneousNaturalOrArtificialEnvironment
    - Miuvig
    - PlantAssociated
    - Sediment
    - Soil
    - SymbiontAssociated
    - WastewaterSludge
    - Water
    range: string
    required: true
    pattern: '[^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{free_text}'
  sym_life_cycle_type:
    name: sym_life_cycle_type
    description: placeholder description; linter will ignore this
    title: symbiotic host organism life cycle type
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0001300
    alias: sym_life_cycle_type
    owner: SymbiontAssociated
    domain_of:
    - SymbiontAssociated
    range: string
    required: true
class_uri: MIXS:0016023