Class: Sediment
placeholder description; linter will ignore this
URI: MIXS:0016011
classDiagram
class Sediment
EnvironmentalPackage <|-- Sediment
Sediment <|-- MigsBaSediment
Sediment <|-- MimsSediment
Sediment : alkalinity
Sediment : alkyl_diethers
Sediment : aminopept_act
Sediment : ammonium
Sediment : bacteria_carb_prod
Sediment : biomass
Sediment : bishomohopanol
Sediment : bromide
Sediment : calcium
Sediment : carb_nitro_ratio
Sediment : chem_administration
Sediment : chloride
Sediment : chlorophyll
Sediment : density
Sediment : diether_lipids
Sediment : diss_carb_dioxide
Sediment : diss_hydrogen
Sediment : diss_inorg_carb
Sediment : diss_org_carb
Sediment : diss_org_nitro
Sediment : diss_oxygen
Sediment : elev
Sediment : glucosidase_act
Sediment : magnesium
Sediment : mean_frict_vel
Sediment : mean_peak_frict_vel
Sediment : methane
Sediment : misc_param
Sediment : n_alkanes
Sediment : nitrate
Sediment : nitrite
Sediment : nitro
Sediment : org_carb
Sediment : org_matter
Sediment : org_nitro
Sediment : organism_count
Sediment : oxy_stat_samp
Sediment --|> OXY_STAT_SAMP_ENUM : oxy_stat_samp
Sediment : part_org_carb
Sediment : particle_class
Sediment : perturbation
Sediment : petroleum_hydrocarb
Sediment : ph
Sediment : phaeopigments
Sediment : phosphate
Sediment : phosplipid_fatt_acid
Sediment : porosity
Sediment : potassium
Sediment : pressure
Sediment : project_name
Sediment : redox_potential
Sediment : salinity
Sediment : samp_store_dur
Sediment : samp_store_loc
Sediment : samp_store_temp
Sediment : samp_vol_we_dna_ext
Sediment : sediment_type
Sediment : silicate
Sediment : sodium
Sediment : sulfate
Sediment : sulfide
Sediment : temp
Sediment : tidal_stage
Sediment --|> TIDAL_STAGE_ENUM : tidal_stage
Sediment : tot_carb
Sediment : tot_depth_water_col
Sediment : tot_org_carb
Sediment : turbidity
Sediment : water_content
Inheritance
- EnvironmentalPackage
- Sediment
- MigsBaSediment [ MigsBa]
- MimsSediment [ Mims]
- Sediment
Slots
| Name | Cardinality and Range | Description | Inheritance |
|---|---|---|---|
| elev | 0..1 recommended String |
placeholder description; linter will ignore this | direct |
| alkalinity | 0..1 String |
placeholder description; linter will ignore this | direct |
| alkyl_diethers | 0..1 String |
placeholder description; linter will ignore this | direct |
| aminopept_act | 0..1 String |
placeholder description; linter will ignore this | direct |
| ammonium | 0..1 String |
placeholder description; linter will ignore this | direct |
| bacteria_carb_prod | 0..1 String |
placeholder description; linter will ignore this | direct |
| biomass | 0..1 String |
placeholder description; linter will ignore this | direct |
| bishomohopanol | 0..1 String |
placeholder description; linter will ignore this | direct |
| bromide | 0..1 String |
placeholder description; linter will ignore this | direct |
| calcium | 0..1 String |
placeholder description; linter will ignore this | direct |
| carb_nitro_ratio | 0..1 Float |
placeholder description; linter will ignore this | direct |
| chem_administration | 0..1 String |
placeholder description; linter will ignore this | direct |
| chloride | 0..1 String |
placeholder description; linter will ignore this | direct |
| chlorophyll | 0..1 String |
placeholder description; linter will ignore this | direct |
| density | 0..1 String |
placeholder description; linter will ignore this | direct |
| diether_lipids | 0..1 String |
placeholder description; linter will ignore this | direct |
| diss_carb_dioxide | 0..1 String |
placeholder description; linter will ignore this | direct |
| diss_hydrogen | 0..1 String |
placeholder description; linter will ignore this | direct |
| diss_inorg_carb | 0..1 String |
placeholder description; linter will ignore this | direct |
| diss_org_carb | 0..1 String |
placeholder description; linter will ignore this | direct |
| diss_org_nitro | 0..1 String |
placeholder description; linter will ignore this | direct |
| diss_oxygen | 0..1 String |
placeholder description; linter will ignore this | direct |
| glucosidase_act | 0..1 String |
placeholder description; linter will ignore this | direct |
| magnesium | 0..1 String |
placeholder description; linter will ignore this | direct |
| mean_frict_vel | 0..1 String |
placeholder description; linter will ignore this | direct |
| mean_peak_frict_vel | 0..1 String |
placeholder description; linter will ignore this | direct |
| methane | 0..1 String |
placeholder description; linter will ignore this | direct |
| misc_param | 0..1 String |
placeholder description; linter will ignore this | direct |
| n_alkanes | 0..1 String |
placeholder description; linter will ignore this | direct |
| nitrate | 0..1 String |
placeholder description; linter will ignore this | direct |
| nitrite | 0..1 String |
placeholder description; linter will ignore this | direct |
| nitro | 0..1 String |
placeholder description; linter will ignore this | direct |
| org_carb | 0..1 String |
placeholder description; linter will ignore this | direct |
| org_matter | 0..1 String |
placeholder description; linter will ignore this | direct |
| org_nitro | 0..1 String |
placeholder description; linter will ignore this | direct |
| organism_count | 0..1 String |
placeholder description; linter will ignore this | direct |
| oxy_stat_samp | 0..1 OXYSTATSAMPENUM |
placeholder description; linter will ignore this | direct |
| part_org_carb | 0..1 String |
placeholder description; linter will ignore this | direct |
| particle_class | 0..1 String |
placeholder description; linter will ignore this | direct |
| perturbation | 0..1 String |
placeholder description; linter will ignore this | direct |
| petroleum_hydrocarb | 0..1 String |
placeholder description; linter will ignore this | direct |
| ph | 0..1 Float |
placeholder description; linter will ignore this | direct |
| phaeopigments | 0..1 String |
placeholder description; linter will ignore this | direct |
| phosphate | 0..1 String |
placeholder description; linter will ignore this | direct |
| phosplipid_fatt_acid | 0..1 String |
placeholder description; linter will ignore this | direct |
| porosity | 0..1 String |
placeholder description; linter will ignore this | direct |
| potassium | 0..1 String |
placeholder description; linter will ignore this | direct |
| pressure | 0..1 String |
placeholder description; linter will ignore this | direct |
| redox_potential | 0..1 String |
placeholder description; linter will ignore this | direct |
| salinity | 0..1 String |
placeholder description; linter will ignore this | direct |
| samp_store_dur | 0..1 String |
placeholder description; linter will ignore this | direct |
| samp_store_loc | 0..1 String |
placeholder description; linter will ignore this | direct |
| samp_store_temp | 0..1 String |
placeholder description; linter will ignore this | direct |
| samp_vol_we_dna_ext | 0..1 String |
placeholder description; linter will ignore this | direct |
| sediment_type | 0..1 String |
placeholder description; linter will ignore this | direct |
| silicate | 0..1 String |
placeholder description; linter will ignore this | direct |
| sodium | 0..1 String |
placeholder description; linter will ignore this | direct |
| sulfate | 0..1 String |
placeholder description; linter will ignore this | direct |
| sulfide | 0..1 String |
placeholder description; linter will ignore this | direct |
| temp | 0..1 String |
placeholder description; linter will ignore this | direct |
| tidal_stage | 0..1 TIDALSTAGEENUM |
placeholder description; linter will ignore this | direct |
| tot_carb | 0..1 String |
placeholder description; linter will ignore this | direct |
| tot_depth_water_col | 0..1 String |
placeholder description; linter will ignore this | direct |
| tot_org_carb | 0..1 String |
placeholder description; linter will ignore this | direct |
| turbidity | 0..1 String |
placeholder description; linter will ignore this | direct |
| water_content | 0..1 String |
placeholder description; linter will ignore this | direct |
| project_name | 1..1 String |
placeholder description; linter will ignore this | direct |
Identifier and Mapping Information
Schema Source
- from schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
Mappings
| Mapping Type | Mapped Value |
|---|---|
| self | MIXS:0016011 |
| native | MIXS:Sediment |
LinkML Source
Direct
name: Sediment
description: placeholder description; linter will ignore this
title: sediment
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
is_a: EnvironmentalPackage
slots:
- elev
- alkalinity
- alkyl_diethers
- aminopept_act
- ammonium
- bacteria_carb_prod
- biomass
- bishomohopanol
- bromide
- calcium
- carb_nitro_ratio
- chem_administration
- chloride
- chlorophyll
- density
- diether_lipids
- diss_carb_dioxide
- diss_hydrogen
- diss_inorg_carb
- diss_org_carb
- diss_org_nitro
- diss_oxygen
- glucosidase_act
- magnesium
- mean_frict_vel
- mean_peak_frict_vel
- methane
- misc_param
- n_alkanes
- nitrate
- nitrite
- nitro
- org_carb
- org_matter
- org_nitro
- organism_count
- oxy_stat_samp
- part_org_carb
- particle_class
- perturbation
- petroleum_hydrocarb
- ph
- phaeopigments
- phosphate
- phosplipid_fatt_acid
- porosity
- potassium
- pressure
- redox_potential
- salinity
- samp_store_dur
- samp_store_loc
- samp_store_temp
- samp_vol_we_dna_ext
- sediment_type
- silicate
- sodium
- sulfate
- sulfide
- temp
- tidal_stage
- tot_carb
- tot_depth_water_col
- tot_org_carb
- turbidity
- water_content
- project_name
slot_usage:
alkalinity:
name: alkalinity
domain_of:
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- Sediment
- WastewaterSludge
- Water
alkyl_diethers:
name: alkyl_diethers
domain_of:
- MicrobialMatBiofilm
- Sediment
- Water
aminopept_act:
name: aminopept_act
domain_of:
- MicrobialMatBiofilm
- Sediment
- Water
ammonium:
name: ammonium
domain_of:
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- Sediment
- Water
bacteria_carb_prod:
name: bacteria_carb_prod
domain_of:
- MicrobialMatBiofilm
- Sediment
- Water
biomass:
name: biomass
domain_of:
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- Sediment
- Water
bishomohopanol:
name: bishomohopanol
domain_of:
- MicrobialMatBiofilm
- Sediment
- Water
bromide:
name: bromide
domain_of:
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- Sediment
- Water
calcium:
name: calcium
domain_of:
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- Sediment
- Water
carb_nitro_ratio:
name: carb_nitro_ratio
domain_of:
- MicrobialMatBiofilm
- Sediment
- Water
chem_administration:
name: chem_administration
domain_of:
- Agriculture
- Air
- FoodFarmEnvironment
- HostAssociated
- HumanAssociated
- HumanGut
- HumanOral
- HumanSkin
- HumanVaginal
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- PlantAssociated
- Sediment
- SymbiontAssociated
- WastewaterSludge
- Water
chloride:
name: chloride
domain_of:
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- Sediment
- Water
chlorophyll:
name: chlorophyll
domain_of:
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- Sediment
- Water
density:
name: density
domain_of:
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- MiscellaneousNaturalOrArtificialEnvironment
- Sediment
- Water
diether_lipids:
name: diether_lipids
domain_of:
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- Sediment
- Water
diss_carb_dioxide:
name: diss_carb_dioxide
domain_of:
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- Sediment
- Water
diss_hydrogen:
name: diss_hydrogen
domain_of:
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- Sediment
- Water
diss_inorg_carb:
name: diss_inorg_carb
domain_of:
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- Sediment
- Water
diss_org_carb:
name: diss_org_carb
domain_of:
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- MicrobialMatBiofilm
- Sediment
- Water
diss_org_nitro:
name: diss_org_nitro
domain_of:
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- Sediment
- Water
diss_oxygen:
name: diss_oxygen
domain_of:
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- Sediment
- Water
elev:
name: elev
domain_of:
- Agriculture
- Air
- Checklist
- HostAssociated
- HydrocarbonResourcesCores
- MicrobialMatBiofilm
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- MiscellaneousNaturalOrArtificialEnvironment
- Miuvig
- PlantAssociated
- Sediment
- Soil
- SymbiontAssociated
- Water
recommended: true
glucosidase_act:
name: glucosidase_act
domain_of:
- MicrobialMatBiofilm
- Sediment
- Water
magnesium:
name: magnesium
domain_of:
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- MicrobialMatBiofilm
- Sediment
- Water
mean_frict_vel:
name: mean_frict_vel
domain_of:
- MicrobialMatBiofilm
- Sediment
- Water
mean_peak_frict_vel:
name: mean_peak_frict_vel
domain_of:
- MicrobialMatBiofilm
- Sediment
- Water
methane:
name: methane
domain_of:
- Air
- MicrobialMatBiofilm
- Sediment
misc_param:
name: misc_param
domain_of:
- Agriculture
- Air
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
- HostAssociated
- HumanAssociated
- HumanGut
- HumanOral
- HumanSkin
- HumanVaginal
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- PlantAssociated
- Sediment
- Soil
- SymbiontAssociated
- WastewaterSludge
- Water
n_alkanes:
name: n_alkanes
domain_of:
- MicrobialMatBiofilm
- Sediment
- Water
nitrate:
name: nitrate
domain_of:
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- Sediment
- WastewaterSludge
- Water
nitrite:
name: nitrite
domain_of:
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- Sediment
- Water
nitro:
name: nitro
domain_of:
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- Sediment
- Water
org_carb:
name: org_carb
domain_of:
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- Sediment
- Water
org_matter:
name: org_matter
domain_of:
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- Sediment
- Soil
- Water
org_nitro:
name: org_nitro
domain_of:
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- Sediment
- Soil
- Water
organism_count:
name: organism_count
domain_of:
- Agriculture
- Air
- BuiltEnvironment
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
- HostAssociated
- HumanAssociated
- HumanGut
- HumanOral
- HumanSkin
- HumanVaginal
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- PlantAssociated
- Sediment
- SymbiontAssociated
- WastewaterSludge
- Water
oxy_stat_samp:
name: oxy_stat_samp
domain_of:
- Agriculture
- Air
- HostAssociated
- HumanAssociated
- HumanGut
- HumanOral
- HumanSkin
- HumanVaginal
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- PlantAssociated
- Sediment
- SymbiontAssociated
- WastewaterSludge
- Water
part_org_carb:
name: part_org_carb
domain_of:
- MicrobialMatBiofilm
- Sediment
- Water
particle_class:
name: particle_class
domain_of:
- Sediment
perturbation:
name: perturbation
domain_of:
- Agriculture
- Air
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodHumanFoods
- HostAssociated
- HumanAssociated
- HumanGut
- HumanOral
- HumanSkin
- HumanVaginal
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- PlantAssociated
- Sediment
- SymbiontAssociated
- WastewaterSludge
- Water
petroleum_hydrocarb:
name: petroleum_hydrocarb
domain_of:
- MicrobialMatBiofilm
- Sediment
- Water
ph:
name: ph
domain_of:
- FoodFarmEnvironment
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- Sediment
- Soil
- WastewaterSludge
- Water
phaeopigments:
name: phaeopigments
domain_of:
- MicrobialMatBiofilm
- Sediment
- Water
phosphate:
name: phosphate
domain_of:
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- Sediment
- WastewaterSludge
- Water
phosplipid_fatt_acid:
name: phosplipid_fatt_acid
domain_of:
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- Sediment
- Water
porosity:
name: porosity
domain_of:
- Agriculture
- HydrocarbonResourcesCores
- Sediment
potassium:
name: potassium
domain_of:
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- Sediment
- Water
pressure:
name: pressure
domain_of:
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- Sediment
- Water
project_name:
name: project_name
domain_of:
- Air
- BuiltEnvironment
- Checklist
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
- HostAssociated
- HumanAssociated
- HumanGut
- HumanOral
- HumanSkin
- HumanVaginal
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- MicrobialMatBiofilm
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- MiscellaneousNaturalOrArtificialEnvironment
- Miuvig
- PlantAssociated
- Sediment
- Soil
- SymbiontAssociated
- WastewaterSludge
- Water
required: true
redox_potential:
name: redox_potential
domain_of:
- MicrobialMatBiofilm
- Sediment
- Water
salinity:
name: salinity
domain_of:
- Air
- FoodFarmEnvironment
- HostAssociated
- HumanAssociated
- HumanGut
- HumanOral
- HumanSkin
- HumanVaginal
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- PlantAssociated
- Sediment
- WastewaterSludge
- Water
samp_store_dur:
name: samp_store_dur
domain_of:
- Agriculture
- Air
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
- HostAssociated
- HumanAssociated
- HumanGut
- HumanOral
- HumanSkin
- HumanVaginal
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- PlantAssociated
- Sediment
- SymbiontAssociated
- WastewaterSludge
- Water
samp_store_loc:
name: samp_store_loc
domain_of:
- Agriculture
- Air
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
- FoodHumanFoods
- HostAssociated
- HumanAssociated
- HumanGut
- HumanOral
- HumanSkin
- HumanVaginal
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- PlantAssociated
- Sediment
- SymbiontAssociated
- WastewaterSludge
- Water
samp_store_temp:
name: samp_store_temp
domain_of:
- Agriculture
- Air
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
- HostAssociated
- HumanAssociated
- HumanGut
- HumanOral
- HumanSkin
- HumanVaginal
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- PlantAssociated
- Sediment
- SymbiontAssociated
- WastewaterSludge
- Water
samp_vol_we_dna_ext:
name: samp_vol_we_dna_ext
domain_of:
- Agriculture
- Air
- Checklist
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
- HostAssociated
- HumanAssociated
- HumanGut
- HumanOral
- HumanSkin
- HumanVaginal
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- MicrobialMatBiofilm
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- MiscellaneousNaturalOrArtificialEnvironment
- Miuvig
- PlantAssociated
- Sediment
- Soil
- SymbiontAssociated
- WastewaterSludge
- Water
sediment_type:
name: sediment_type
domain_of:
- Sediment
silicate:
name: silicate
domain_of:
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- Sediment
- Water
sodium:
name: sodium
domain_of:
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- Sediment
- WastewaterSludge
- Water
sulfate:
name: sulfate
domain_of:
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- Sediment
- Water
sulfide:
name: sulfide
domain_of:
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- Sediment
- Water
temp:
name: temp
domain_of:
- Agriculture
- Air
- Checklist
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodHumanFoods
- HostAssociated
- HumanAssociated
- HumanGut
- HumanOral
- HumanSkin
- HumanVaginal
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- MicrobialMatBiofilm
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- MiscellaneousNaturalOrArtificialEnvironment
- Miuvig
- PlantAssociated
- Sediment
- Soil
- SymbiontAssociated
- WastewaterSludge
- Water
tidal_stage:
name: tidal_stage
domain_of:
- Sediment
- Water
tot_carb:
name: tot_carb
domain_of:
- Agriculture
- MicrobialMatBiofilm
- Sediment
tot_depth_water_col:
name: tot_depth_water_col
domain_of:
- Sediment
- Water
tot_org_carb:
name: tot_org_carb
domain_of:
- Agriculture
- FoodFarmEnvironment
- MicrobialMatBiofilm
- Sediment
- Soil
turbidity:
name: turbidity
domain_of:
- FoodFarmEnvironment
- MicrobialMatBiofilm
- Sediment
- Water
water_content:
name: water_content
domain_of:
- MicrobialMatBiofilm
- Sediment
- Soil
class_uri: MIXS:0016011
Induced
name: Sediment
description: placeholder description; linter will ignore this
title: sediment
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
is_a: EnvironmentalPackage
slot_usage:
alkalinity:
name: alkalinity
domain_of:
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- Sediment
- WastewaterSludge
- Water
alkyl_diethers:
name: alkyl_diethers
domain_of:
- MicrobialMatBiofilm
- Sediment
- Water
aminopept_act:
name: aminopept_act
domain_of:
- MicrobialMatBiofilm
- Sediment
- Water
ammonium:
name: ammonium
domain_of:
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- Sediment
- Water
bacteria_carb_prod:
name: bacteria_carb_prod
domain_of:
- MicrobialMatBiofilm
- Sediment
- Water
biomass:
name: biomass
domain_of:
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- Sediment
- Water
bishomohopanol:
name: bishomohopanol
domain_of:
- MicrobialMatBiofilm
- Sediment
- Water
bromide:
name: bromide
domain_of:
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- Sediment
- Water
calcium:
name: calcium
domain_of:
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- Sediment
- Water
carb_nitro_ratio:
name: carb_nitro_ratio
domain_of:
- MicrobialMatBiofilm
- Sediment
- Water
chem_administration:
name: chem_administration
domain_of:
- Agriculture
- Air
- FoodFarmEnvironment
- HostAssociated
- HumanAssociated
- HumanGut
- HumanOral
- HumanSkin
- HumanVaginal
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- PlantAssociated
- Sediment
- SymbiontAssociated
- WastewaterSludge
- Water
chloride:
name: chloride
domain_of:
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- Sediment
- Water
chlorophyll:
name: chlorophyll
domain_of:
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- Sediment
- Water
density:
name: density
domain_of:
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- MiscellaneousNaturalOrArtificialEnvironment
- Sediment
- Water
diether_lipids:
name: diether_lipids
domain_of:
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- Sediment
- Water
diss_carb_dioxide:
name: diss_carb_dioxide
domain_of:
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- Sediment
- Water
diss_hydrogen:
name: diss_hydrogen
domain_of:
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- Sediment
- Water
diss_inorg_carb:
name: diss_inorg_carb
domain_of:
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- Sediment
- Water
diss_org_carb:
name: diss_org_carb
domain_of:
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- MicrobialMatBiofilm
- Sediment
- Water
diss_org_nitro:
name: diss_org_nitro
domain_of:
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- Sediment
- Water
diss_oxygen:
name: diss_oxygen
domain_of:
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- Sediment
- Water
elev:
name: elev
domain_of:
- Agriculture
- Air
- Checklist
- HostAssociated
- HydrocarbonResourcesCores
- MicrobialMatBiofilm
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- MiscellaneousNaturalOrArtificialEnvironment
- Miuvig
- PlantAssociated
- Sediment
- Soil
- SymbiontAssociated
- Water
recommended: true
glucosidase_act:
name: glucosidase_act
domain_of:
- MicrobialMatBiofilm
- Sediment
- Water
magnesium:
name: magnesium
domain_of:
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- MicrobialMatBiofilm
- Sediment
- Water
mean_frict_vel:
name: mean_frict_vel
domain_of:
- MicrobialMatBiofilm
- Sediment
- Water
mean_peak_frict_vel:
name: mean_peak_frict_vel
domain_of:
- MicrobialMatBiofilm
- Sediment
- Water
methane:
name: methane
domain_of:
- Air
- MicrobialMatBiofilm
- Sediment
misc_param:
name: misc_param
domain_of:
- Agriculture
- Air
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
- HostAssociated
- HumanAssociated
- HumanGut
- HumanOral
- HumanSkin
- HumanVaginal
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- PlantAssociated
- Sediment
- Soil
- SymbiontAssociated
- WastewaterSludge
- Water
n_alkanes:
name: n_alkanes
domain_of:
- MicrobialMatBiofilm
- Sediment
- Water
nitrate:
name: nitrate
domain_of:
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- Sediment
- WastewaterSludge
- Water
nitrite:
name: nitrite
domain_of:
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- Sediment
- Water
nitro:
name: nitro
domain_of:
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- Sediment
- Water
org_carb:
name: org_carb
domain_of:
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- Sediment
- Water
org_matter:
name: org_matter
domain_of:
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- Sediment
- Soil
- Water
org_nitro:
name: org_nitro
domain_of:
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- Sediment
- Soil
- Water
organism_count:
name: organism_count
domain_of:
- Agriculture
- Air
- BuiltEnvironment
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
- HostAssociated
- HumanAssociated
- HumanGut
- HumanOral
- HumanSkin
- HumanVaginal
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- PlantAssociated
- Sediment
- SymbiontAssociated
- WastewaterSludge
- Water
oxy_stat_samp:
name: oxy_stat_samp
domain_of:
- Agriculture
- Air
- HostAssociated
- HumanAssociated
- HumanGut
- HumanOral
- HumanSkin
- HumanVaginal
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- PlantAssociated
- Sediment
- SymbiontAssociated
- WastewaterSludge
- Water
part_org_carb:
name: part_org_carb
domain_of:
- MicrobialMatBiofilm
- Sediment
- Water
particle_class:
name: particle_class
domain_of:
- Sediment
perturbation:
name: perturbation
domain_of:
- Agriculture
- Air
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodHumanFoods
- HostAssociated
- HumanAssociated
- HumanGut
- HumanOral
- HumanSkin
- HumanVaginal
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- PlantAssociated
- Sediment
- SymbiontAssociated
- WastewaterSludge
- Water
petroleum_hydrocarb:
name: petroleum_hydrocarb
domain_of:
- MicrobialMatBiofilm
- Sediment
- Water
ph:
name: ph
domain_of:
- FoodFarmEnvironment
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- Sediment
- Soil
- WastewaterSludge
- Water
phaeopigments:
name: phaeopigments
domain_of:
- MicrobialMatBiofilm
- Sediment
- Water
phosphate:
name: phosphate
domain_of:
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- Sediment
- WastewaterSludge
- Water
phosplipid_fatt_acid:
name: phosplipid_fatt_acid
domain_of:
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- Sediment
- Water
porosity:
name: porosity
domain_of:
- Agriculture
- HydrocarbonResourcesCores
- Sediment
potassium:
name: potassium
domain_of:
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- Sediment
- Water
pressure:
name: pressure
domain_of:
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- Sediment
- Water
project_name:
name: project_name
domain_of:
- Air
- BuiltEnvironment
- Checklist
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
- HostAssociated
- HumanAssociated
- HumanGut
- HumanOral
- HumanSkin
- HumanVaginal
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- MicrobialMatBiofilm
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- MiscellaneousNaturalOrArtificialEnvironment
- Miuvig
- PlantAssociated
- Sediment
- Soil
- SymbiontAssociated
- WastewaterSludge
- Water
required: true
redox_potential:
name: redox_potential
domain_of:
- MicrobialMatBiofilm
- Sediment
- Water
salinity:
name: salinity
domain_of:
- Air
- FoodFarmEnvironment
- HostAssociated
- HumanAssociated
- HumanGut
- HumanOral
- HumanSkin
- HumanVaginal
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- PlantAssociated
- Sediment
- WastewaterSludge
- Water
samp_store_dur:
name: samp_store_dur
domain_of:
- Agriculture
- Air
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
- HostAssociated
- HumanAssociated
- HumanGut
- HumanOral
- HumanSkin
- HumanVaginal
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- PlantAssociated
- Sediment
- SymbiontAssociated
- WastewaterSludge
- Water
samp_store_loc:
name: samp_store_loc
domain_of:
- Agriculture
- Air
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
- FoodHumanFoods
- HostAssociated
- HumanAssociated
- HumanGut
- HumanOral
- HumanSkin
- HumanVaginal
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- PlantAssociated
- Sediment
- SymbiontAssociated
- WastewaterSludge
- Water
samp_store_temp:
name: samp_store_temp
domain_of:
- Agriculture
- Air
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
- HostAssociated
- HumanAssociated
- HumanGut
- HumanOral
- HumanSkin
- HumanVaginal
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- PlantAssociated
- Sediment
- SymbiontAssociated
- WastewaterSludge
- Water
samp_vol_we_dna_ext:
name: samp_vol_we_dna_ext
domain_of:
- Agriculture
- Air
- Checklist
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
- HostAssociated
- HumanAssociated
- HumanGut
- HumanOral
- HumanSkin
- HumanVaginal
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- MicrobialMatBiofilm
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- MiscellaneousNaturalOrArtificialEnvironment
- Miuvig
- PlantAssociated
- Sediment
- Soil
- SymbiontAssociated
- WastewaterSludge
- Water
sediment_type:
name: sediment_type
domain_of:
- Sediment
silicate:
name: silicate
domain_of:
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- Sediment
- Water
sodium:
name: sodium
domain_of:
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- Sediment
- WastewaterSludge
- Water
sulfate:
name: sulfate
domain_of:
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- Sediment
- Water
sulfide:
name: sulfide
domain_of:
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- Sediment
- Water
temp:
name: temp
domain_of:
- Agriculture
- Air
- Checklist
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodHumanFoods
- HostAssociated
- HumanAssociated
- HumanGut
- HumanOral
- HumanSkin
- HumanVaginal
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- MicrobialMatBiofilm
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- MiscellaneousNaturalOrArtificialEnvironment
- Miuvig
- PlantAssociated
- Sediment
- Soil
- SymbiontAssociated
- WastewaterSludge
- Water
tidal_stage:
name: tidal_stage
domain_of:
- Sediment
- Water
tot_carb:
name: tot_carb
domain_of:
- Agriculture
- MicrobialMatBiofilm
- Sediment
tot_depth_water_col:
name: tot_depth_water_col
domain_of:
- Sediment
- Water
tot_org_carb:
name: tot_org_carb
domain_of:
- Agriculture
- FoodFarmEnvironment
- MicrobialMatBiofilm
- Sediment
- Soil
turbidity:
name: turbidity
domain_of:
- FoodFarmEnvironment
- MicrobialMatBiofilm
- Sediment
- Water
water_content:
name: water_content
domain_of:
- MicrobialMatBiofilm
- Sediment
- Soil
attributes:
elev:
name: elev
description: placeholder description; linter will ignore this
title: elevation
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000093
alias: elev
owner: Sediment
domain_of:
- Agriculture
- Air
- Checklist
- HostAssociated
- HydrocarbonResourcesCores
- MicrobialMatBiofilm
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- MiscellaneousNaturalOrArtificialEnvironment
- Miuvig
- PlantAssociated
- Sediment
- Soil
- SymbiontAssociated
- Water
range: string
recommended: true
pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
structured_pattern:
syntax: '{float} {unit}'
alkalinity:
name: alkalinity
description: placeholder description; linter will ignore this
title: alkalinity
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000421
alias: alkalinity
owner: Sediment
domain_of:
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- Sediment
- WastewaterSludge
- Water
range: string
pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
structured_pattern:
syntax: '{float} {unit}'
alkyl_diethers:
name: alkyl_diethers
description: placeholder description; linter will ignore this
title: alkyl diethers
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000490
alias: alkyl_diethers
owner: Sediment
domain_of:
- MicrobialMatBiofilm
- Sediment
- Water
range: string
pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
structured_pattern:
syntax: '{float} {unit}'
aminopept_act:
name: aminopept_act
description: placeholder description; linter will ignore this
title: aminopeptidase activity
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000172
alias: aminopept_act
owner: Sediment
domain_of:
- MicrobialMatBiofilm
- Sediment
- Water
range: string
pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
structured_pattern:
syntax: '{float} {unit}'
ammonium:
name: ammonium
description: placeholder description; linter will ignore this
title: ammonium
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000427
alias: ammonium
owner: Sediment
domain_of:
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- Sediment
- Water
range: string
pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
structured_pattern:
syntax: '{float} {unit}'
bacteria_carb_prod:
name: bacteria_carb_prod
description: placeholder description; linter will ignore this
title: bacterial carbon production
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000173
alias: bacteria_carb_prod
owner: Sediment
domain_of:
- MicrobialMatBiofilm
- Sediment
- Water
range: string
pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
structured_pattern:
syntax: '{float} {unit}'
biomass:
name: biomass
description: placeholder description; linter will ignore this
title: biomass
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000174
alias: biomass
owner: Sediment
domain_of:
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- Sediment
- Water
range: string
pattern: '[^s\|][^\r\n\t\|]*;[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
structured_pattern:
syntax: '{free_text};{float} {unit}'
bishomohopanol:
name: bishomohopanol
description: placeholder description; linter will ignore this
title: bishomohopanol
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000175
alias: bishomohopanol
owner: Sediment
domain_of:
- MicrobialMatBiofilm
- Sediment
- Water
range: string
pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
structured_pattern:
syntax: '{float} {unit}'
bromide:
name: bromide
description: placeholder description; linter will ignore this
title: bromide
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000176
alias: bromide
owner: Sediment
domain_of:
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- Sediment
- Water
range: string
pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
structured_pattern:
syntax: '{float} {unit}'
calcium:
name: calcium
description: placeholder description; linter will ignore this
title: calcium
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000432
alias: calcium
owner: Sediment
domain_of:
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- Sediment
- Water
range: string
pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
structured_pattern:
syntax: '{float} {unit}'
carb_nitro_ratio:
name: carb_nitro_ratio
description: placeholder description; linter will ignore this
title: carbon/nitrogen ratio
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000310
alias: carb_nitro_ratio
owner: Sediment
domain_of:
- MicrobialMatBiofilm
- Sediment
- Water
range: float
chem_administration:
name: chem_administration
description: placeholder description; linter will ignore this
title: chemical administration
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000751
alias: chem_administration
owner: Sediment
domain_of:
- Agriculture
- Air
- FoodFarmEnvironment
- HostAssociated
- HumanAssociated
- HumanGut
- HumanOral
- HumanSkin
- HumanVaginal
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- PlantAssociated
- Sediment
- SymbiontAssociated
- WastewaterSludge
- Water
range: string
chloride:
name: chloride
description: placeholder description; linter will ignore this
title: chloride
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000429
alias: chloride
owner: Sediment
domain_of:
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- Sediment
- Water
range: string
pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
structured_pattern:
syntax: '{float} {unit}'
chlorophyll:
name: chlorophyll
description: placeholder description; linter will ignore this
title: chlorophyll
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000177
alias: chlorophyll
owner: Sediment
domain_of:
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- Sediment
- Water
range: string
pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
structured_pattern:
syntax: '{float} {unit}'
density:
name: density
description: placeholder description; linter will ignore this
title: density
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000435
alias: density
owner: Sediment
domain_of:
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- MiscellaneousNaturalOrArtificialEnvironment
- Sediment
- Water
range: string
pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
structured_pattern:
syntax: '{float} {unit}'
diether_lipids:
name: diether_lipids
description: placeholder description; linter will ignore this
title: diether lipids
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000178
alias: diether_lipids
owner: Sediment
domain_of:
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- Sediment
- Water
range: string
pattern: (([^s\|][^\r\n\t\|]*;[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*)\|)*([^s\|][^\r\n\t\|]*;[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)?
[^s\|][^\r\n\t\|]*)
structured_pattern:
syntax: (({free_text};{float} {unit})\|)*({free_text};{float} {unit})
diss_carb_dioxide:
name: diss_carb_dioxide
description: placeholder description; linter will ignore this
title: dissolved carbon dioxide
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000436
alias: diss_carb_dioxide
owner: Sediment
domain_of:
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- Sediment
- Water
range: string
pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
structured_pattern:
syntax: '{float} {unit}'
diss_hydrogen:
name: diss_hydrogen
description: placeholder description; linter will ignore this
title: dissolved hydrogen
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000179
alias: diss_hydrogen
owner: Sediment
domain_of:
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- Sediment
- Water
range: string
pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
structured_pattern:
syntax: '{float} {unit}'
diss_inorg_carb:
name: diss_inorg_carb
description: placeholder description; linter will ignore this
title: dissolved inorganic carbon
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000434
alias: diss_inorg_carb
owner: Sediment
domain_of:
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- Sediment
- Water
range: string
pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
structured_pattern:
syntax: '{float} {unit}'
diss_org_carb:
name: diss_org_carb
description: placeholder description; linter will ignore this
title: dissolved organic carbon
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000433
alias: diss_org_carb
owner: Sediment
domain_of:
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- MicrobialMatBiofilm
- Sediment
- Water
range: string
pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
structured_pattern:
syntax: '{float} {unit}'
diss_org_nitro:
name: diss_org_nitro
description: placeholder description; linter will ignore this
title: dissolved organic nitrogen
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000162
alias: diss_org_nitro
owner: Sediment
domain_of:
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- Sediment
- Water
range: string
pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
structured_pattern:
syntax: '{float} {unit}'
diss_oxygen:
name: diss_oxygen
description: placeholder description; linter will ignore this
title: dissolved oxygen
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000119
alias: diss_oxygen
owner: Sediment
domain_of:
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- Sediment
- Water
range: string
pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
structured_pattern:
syntax: '{float} {unit}'
glucosidase_act:
name: glucosidase_act
description: placeholder description; linter will ignore this
title: glucosidase activity
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000137
alias: glucosidase_act
owner: Sediment
domain_of:
- MicrobialMatBiofilm
- Sediment
- Water
range: string
pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
structured_pattern:
syntax: '{float} {unit}'
magnesium:
name: magnesium
description: placeholder description; linter will ignore this
title: magnesium
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000431
alias: magnesium
owner: Sediment
domain_of:
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- MicrobialMatBiofilm
- Sediment
- Water
range: string
pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
structured_pattern:
syntax: '{float} {unit}'
mean_frict_vel:
name: mean_frict_vel
description: placeholder description; linter will ignore this
title: mean friction velocity
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000498
alias: mean_frict_vel
owner: Sediment
domain_of:
- MicrobialMatBiofilm
- Sediment
- Water
range: string
pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
structured_pattern:
syntax: '{float} {unit}'
mean_peak_frict_vel:
name: mean_peak_frict_vel
description: placeholder description; linter will ignore this
title: mean peak friction velocity
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000502
alias: mean_peak_frict_vel
owner: Sediment
domain_of:
- MicrobialMatBiofilm
- Sediment
- Water
range: string
pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
structured_pattern:
syntax: '{float} {unit}'
methane:
name: methane
description: placeholder description; linter will ignore this
title: methane
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000101
alias: methane
owner: Sediment
domain_of:
- Air
- MicrobialMatBiofilm
- Sediment
range: string
pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
structured_pattern:
syntax: '{float} {unit}'
misc_param:
name: misc_param
description: placeholder description; linter will ignore this
title: miscellaneous parameter
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000752
alias: misc_param
owner: Sediment
domain_of:
- Agriculture
- Air
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
- HostAssociated
- HumanAssociated
- HumanGut
- HumanOral
- HumanSkin
- HumanVaginal
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- PlantAssociated
- Sediment
- Soil
- SymbiontAssociated
- WastewaterSludge
- Water
range: string
pattern: (([^s\|][^\r\n\t\|]*;[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*)\\|)*([^s\|][^\r\n\t\|]*;[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)?
[^s\|][^\r\n\t\|]*)
structured_pattern:
syntax: (({free_text};{float} {unit})\\|)*({free_text};{float} {unit})
n_alkanes:
name: n_alkanes
description: placeholder description; linter will ignore this
title: n-alkanes
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000503
alias: n_alkanes
owner: Sediment
domain_of:
- MicrobialMatBiofilm
- Sediment
- Water
range: string
pattern: '[^s\|][^\r\n\t\|]*;[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
structured_pattern:
syntax: '{free_text};{float} {unit}'
nitrate:
name: nitrate
description: placeholder description; linter will ignore this
title: nitrate
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000425
alias: nitrate
owner: Sediment
domain_of:
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- Sediment
- WastewaterSludge
- Water
range: string
pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
structured_pattern:
syntax: '{float} {unit}'
nitrite:
name: nitrite
description: placeholder description; linter will ignore this
title: nitrite
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000426
alias: nitrite
owner: Sediment
domain_of:
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- Sediment
- Water
range: string
pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
structured_pattern:
syntax: '{float} {unit}'
nitro:
name: nitro
description: placeholder description; linter will ignore this
title: nitrogen
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000504
alias: nitro
owner: Sediment
domain_of:
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- Sediment
- Water
range: string
pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
structured_pattern:
syntax: '{float} {unit}'
org_carb:
name: org_carb
description: placeholder description; linter will ignore this
title: organic carbon
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000508
alias: org_carb
owner: Sediment
domain_of:
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- Sediment
- Water
range: string
pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
structured_pattern:
syntax: '{float} {unit}'
org_matter:
name: org_matter
description: placeholder description; linter will ignore this
title: organic matter
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000204
alias: org_matter
owner: Sediment
domain_of:
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- Sediment
- Soil
- Water
range: string
pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
structured_pattern:
syntax: '{float} {unit}'
org_nitro:
name: org_nitro
description: placeholder description; linter will ignore this
title: organic nitrogen
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000205
alias: org_nitro
owner: Sediment
domain_of:
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- Sediment
- Soil
- Water
range: string
pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
structured_pattern:
syntax: '{float} {unit}'
organism_count:
name: organism_count
description: placeholder description; linter will ignore this
title: organism count
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000103
alias: organism_count
owner: Sediment
domain_of:
- Agriculture
- Air
- BuiltEnvironment
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
- HostAssociated
- HumanAssociated
- HumanGut
- HumanOral
- HumanSkin
- HumanVaginal
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- PlantAssociated
- Sediment
- SymbiontAssociated
- WastewaterSludge
- Water
range: string
oxy_stat_samp:
name: oxy_stat_samp
description: placeholder description; linter will ignore this
title: oxygenation status of sample
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000753
alias: oxy_stat_samp
owner: Sediment
domain_of:
- Agriculture
- Air
- HostAssociated
- HumanAssociated
- HumanGut
- HumanOral
- HumanSkin
- HumanVaginal
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- PlantAssociated
- Sediment
- SymbiontAssociated
- WastewaterSludge
- Water
range: OXY_STAT_SAMP_ENUM
part_org_carb:
name: part_org_carb
description: placeholder description; linter will ignore this
title: particulate organic carbon
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000515
alias: part_org_carb
owner: Sediment
domain_of:
- MicrobialMatBiofilm
- Sediment
- Water
range: string
pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
structured_pattern:
syntax: '{float} {unit}'
particle_class:
name: particle_class
description: placeholder description; linter will ignore this
title: particle classification
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000206
alias: particle_class
owner: Sediment
domain_of:
- Sediment
range: string
pattern: '[^s\|][^\r\n\t\|]*;[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
structured_pattern:
syntax: '{free_text};{float} {unit}'
perturbation:
name: perturbation
description: placeholder description; linter will ignore this
title: perturbation
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000754
alias: perturbation
owner: Sediment
domain_of:
- Agriculture
- Air
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodHumanFoods
- HostAssociated
- HumanAssociated
- HumanGut
- HumanOral
- HumanSkin
- HumanVaginal
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- PlantAssociated
- Sediment
- SymbiontAssociated
- WastewaterSludge
- Water
range: string
petroleum_hydrocarb:
name: petroleum_hydrocarb
description: placeholder description; linter will ignore this
title: petroleum hydrocarbon
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000516
alias: petroleum_hydrocarb
owner: Sediment
domain_of:
- MicrobialMatBiofilm
- Sediment
- Water
range: string
pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
structured_pattern:
syntax: '{float} {unit}'
ph:
name: ph
description: placeholder description; linter will ignore this
title: pH
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0001001
alias: ph
owner: Sediment
domain_of:
- FoodFarmEnvironment
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- Sediment
- Soil
- WastewaterSludge
- Water
range: float
phaeopigments:
name: phaeopigments
description: placeholder description; linter will ignore this
title: phaeopigments
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000180
alias: phaeopigments
owner: Sediment
domain_of:
- MicrobialMatBiofilm
- Sediment
- Water
range: string
pattern: (([^s\|][^\r\n\t\|]*;[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*)\|)*([^s\|][^\r\n\t\|]*;[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)?
[^s\|][^\r\n\t\|]*)
structured_pattern:
syntax: (({free_text};{float} {unit})\|)*({free_text};{float} {unit})
phosphate:
name: phosphate
description: placeholder description; linter will ignore this
title: phosphate
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000505
alias: phosphate
owner: Sediment
domain_of:
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- Sediment
- WastewaterSludge
- Water
range: string
pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
structured_pattern:
syntax: '{float} {unit}'
phosplipid_fatt_acid:
name: phosplipid_fatt_acid
description: placeholder description; linter will ignore this
title: phospholipid fatty acid
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000181
alias: phosplipid_fatt_acid
owner: Sediment
domain_of:
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- Sediment
- Water
range: string
pattern: (([^s\|][^\r\n\t\|]*)\|)*([^s\|][^\r\n\t\|]*)
structured_pattern:
syntax: (({free_text})\|)*({free_text})
porosity:
name: porosity
description: placeholder description; linter will ignore this
title: porosity
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000211
alias: porosity
owner: Sediment
domain_of:
- Agriculture
- HydrocarbonResourcesCores
- Sediment
range: string
potassium:
name: potassium
description: placeholder description; linter will ignore this
title: potassium
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000430
alias: potassium
owner: Sediment
domain_of:
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- Sediment
- Water
range: string
pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
structured_pattern:
syntax: '{float} {unit}'
pressure:
name: pressure
description: placeholder description; linter will ignore this
title: pressure
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000412
alias: pressure
owner: Sediment
domain_of:
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- Sediment
- Water
range: string
pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
structured_pattern:
syntax: '{float} {unit}'
redox_potential:
name: redox_potential
description: placeholder description; linter will ignore this
title: redox potential
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000182
alias: redox_potential
owner: Sediment
domain_of:
- MicrobialMatBiofilm
- Sediment
- Water
range: string
pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
structured_pattern:
syntax: '{float} {unit}'
salinity:
name: salinity
description: placeholder description; linter will ignore this
title: salinity
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000183
alias: salinity
owner: Sediment
domain_of:
- Air
- FoodFarmEnvironment
- HostAssociated
- HumanAssociated
- HumanGut
- HumanOral
- HumanSkin
- HumanVaginal
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- PlantAssociated
- Sediment
- WastewaterSludge
- Water
range: string
pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
structured_pattern:
syntax: '{float} {unit}'
samp_store_dur:
name: samp_store_dur
description: placeholder description; linter will ignore this
title: sample storage duration
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000116
alias: samp_store_dur
owner: Sediment
domain_of:
- Agriculture
- Air
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
- HostAssociated
- HumanAssociated
- HumanGut
- HumanOral
- HumanSkin
- HumanVaginal
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- PlantAssociated
- Sediment
- SymbiontAssociated
- WastewaterSludge
- Water
range: string
pattern: P(?=\d+[YMWD])(\d+Y)?(\d+M)?(\d+W)?(\d+D)?(T(?=\d+[HMS])(\d+H)?(\d+M)?(\d+S)?)?
structured_pattern:
syntax: '{period}'
samp_store_loc:
name: samp_store_loc
description: placeholder description; linter will ignore this
title: sample storage location
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000755
alias: samp_store_loc
owner: Sediment
domain_of:
- Agriculture
- Air
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
- FoodHumanFoods
- HostAssociated
- HumanAssociated
- HumanGut
- HumanOral
- HumanSkin
- HumanVaginal
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- PlantAssociated
- Sediment
- SymbiontAssociated
- WastewaterSludge
- Water
range: string
pattern: '[^s\|][^\r\n\t\|]*'
structured_pattern:
syntax: '{free_text}'
samp_store_temp:
name: samp_store_temp
description: placeholder description; linter will ignore this
title: sample storage temperature
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000110
alias: samp_store_temp
owner: Sediment
domain_of:
- Agriculture
- Air
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
- HostAssociated
- HumanAssociated
- HumanGut
- HumanOral
- HumanSkin
- HumanVaginal
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- PlantAssociated
- Sediment
- SymbiontAssociated
- WastewaterSludge
- Water
range: string
pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
structured_pattern:
syntax: '{float} {unit}'
samp_vol_we_dna_ext:
name: samp_vol_we_dna_ext
description: placeholder description; linter will ignore this
title: sample volume or weight for DNA extraction
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000111
alias: samp_vol_we_dna_ext
owner: Sediment
domain_of:
- Agriculture
- Air
- Checklist
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
- HostAssociated
- HumanAssociated
- HumanGut
- HumanOral
- HumanSkin
- HumanVaginal
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- MicrobialMatBiofilm
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- MiscellaneousNaturalOrArtificialEnvironment
- Miuvig
- PlantAssociated
- Sediment
- Soil
- SymbiontAssociated
- WastewaterSludge
- Water
range: string
pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
structured_pattern:
syntax: '{float} {unit}'
sediment_type:
name: sediment_type
description: placeholder description; linter will ignore this
title: sediment type
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0001078
alias: sediment_type
owner: Sediment
domain_of:
- Sediment
range: string
silicate:
name: silicate
description: placeholder description; linter will ignore this
title: silicate
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000184
alias: silicate
owner: Sediment
domain_of:
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- Sediment
- Water
range: string
pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
structured_pattern:
syntax: '{float} {unit}'
sodium:
name: sodium
description: placeholder description; linter will ignore this
title: sodium
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000428
alias: sodium
owner: Sediment
domain_of:
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- Sediment
- WastewaterSludge
- Water
range: string
pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
structured_pattern:
syntax: '{float} {unit}'
sulfate:
name: sulfate
description: placeholder description; linter will ignore this
title: sulfate
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000423
alias: sulfate
owner: Sediment
domain_of:
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- Sediment
- Water
range: string
pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
structured_pattern:
syntax: '{float} {unit}'
sulfide:
name: sulfide
description: placeholder description; linter will ignore this
title: sulfide
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000424
alias: sulfide
owner: Sediment
domain_of:
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- Sediment
- Water
range: string
pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
structured_pattern:
syntax: '{float} {unit}'
temp:
name: temp
description: placeholder description; linter will ignore this
title: temperature
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000113
alias: temp
owner: Sediment
domain_of:
- Agriculture
- Air
- Checklist
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodHumanFoods
- HostAssociated
- HumanAssociated
- HumanGut
- HumanOral
- HumanSkin
- HumanVaginal
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- MicrobialMatBiofilm
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- MiscellaneousNaturalOrArtificialEnvironment
- Miuvig
- PlantAssociated
- Sediment
- Soil
- SymbiontAssociated
- WastewaterSludge
- Water
range: string
pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
structured_pattern:
syntax: '{float} {unit}'
tidal_stage:
name: tidal_stage
description: placeholder description; linter will ignore this
title: tidal stage
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000750
alias: tidal_stage
owner: Sediment
domain_of:
- Sediment
- Water
range: TIDAL_STAGE_ENUM
tot_carb:
name: tot_carb
description: placeholder description; linter will ignore this
title: total carbon
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000525
alias: tot_carb
owner: Sediment
domain_of:
- Agriculture
- MicrobialMatBiofilm
- Sediment
range: string
pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
structured_pattern:
syntax: '{float} {unit}'
tot_depth_water_col:
name: tot_depth_water_col
description: placeholder description; linter will ignore this
title: total depth of water column
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000634
alias: tot_depth_water_col
owner: Sediment
domain_of:
- Sediment
- Water
range: string
pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
structured_pattern:
syntax: '{float} {unit}'
tot_org_carb:
name: tot_org_carb
description: placeholder description; linter will ignore this
title: total organic carbon
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000533
alias: tot_org_carb
owner: Sediment
domain_of:
- Agriculture
- FoodFarmEnvironment
- MicrobialMatBiofilm
- Sediment
- Soil
range: string
turbidity:
name: turbidity
description: placeholder description; linter will ignore this
title: turbidity
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000191
alias: turbidity
owner: Sediment
domain_of:
- FoodFarmEnvironment
- MicrobialMatBiofilm
- Sediment
- Water
range: string
pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
structured_pattern:
syntax: '{float} {unit}'
water_content:
name: water_content
description: placeholder description; linter will ignore this
title: water content
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000185
alias: water_content
owner: Sediment
domain_of:
- MicrobialMatBiofilm
- Sediment
- Soil
range: string
pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
structured_pattern:
syntax: '{float} {unit}'
project_name:
name: project_name
description: placeholder description; linter will ignore this
title: project name
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000092
alias: project_name
owner: Sediment
domain_of:
- Air
- BuiltEnvironment
- Checklist
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
- HostAssociated
- HumanAssociated
- HumanGut
- HumanOral
- HumanSkin
- HumanVaginal
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- MicrobialMatBiofilm
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- MiscellaneousNaturalOrArtificialEnvironment
- Miuvig
- PlantAssociated
- Sediment
- Soil
- SymbiontAssociated
- WastewaterSludge
- Water
range: string
required: true
pattern: '[^s\|][^\r\n\t\|]*'
structured_pattern:
syntax: '{free_text}'
class_uri: MIXS:0016011