Class: PlantAssociated
placeholder description; linter will ignore this
URI: MIXS:0016010
classDiagram
class PlantAssociated
EnvironmentalPackage <|-- PlantAssociated
PlantAssociated <|-- MigsBaPlantAssociated
PlantAssociated <|-- MimsPlantAssociated
PlantAssociated : air_temp_regm
PlantAssociated : ances_data
PlantAssociated : antibiotic_regm
PlantAssociated : biol_stat
PlantAssociated : biotic_regm
PlantAssociated : chem_administration
PlantAssociated : chem_mutagen
PlantAssociated : climate_environment
PlantAssociated : cult_root_med
PlantAssociated : elev
PlantAssociated : fertilizer_regm
PlantAssociated : fungicide_regm
PlantAssociated : gaseous_environment
PlantAssociated : genetic_mod
PlantAssociated : gravity
PlantAssociated : growth_facil
PlantAssociated : growth_habit
PlantAssociated : growth_hormone_regm
PlantAssociated : herbicide_regm
PlantAssociated : host_age
PlantAssociated : host_common_name
PlantAssociated : host_disease_stat
PlantAssociated : host_dry_mass
PlantAssociated : host_genotype
PlantAssociated : host_height
PlantAssociated : host_length
PlantAssociated : host_life_stage
PlantAssociated : host_phenotype
PlantAssociated : host_subspecf_genlin
PlantAssociated : host_taxid
PlantAssociated : host_tot_mass
PlantAssociated : host_wet_mass
PlantAssociated : humidity_regm
PlantAssociated : light_regm
PlantAssociated : mechanical_damage
PlantAssociated : mineral_nutr_regm
PlantAssociated : misc_param
PlantAssociated : non_mineral_nutr_regm
PlantAssociated : organism_count
PlantAssociated : oxy_stat_samp
PlantAssociated --|> OXY_STAT_SAMP_ENUM : oxy_stat_samp
PlantAssociated : perturbation
PlantAssociated : pesticide_regm
PlantAssociated : ph_regm
PlantAssociated : plant_growth_med
PlantAssociated : plant_product
PlantAssociated : plant_sex
PlantAssociated : plant_struc
PlantAssociated : project_name
PlantAssociated : radiation_regm
PlantAssociated : rainfall_regm
PlantAssociated : root_cond
PlantAssociated : root_med_carbon
PlantAssociated : root_med_macronutr
PlantAssociated : root_med_micronutr
PlantAssociated : root_med_ph
PlantAssociated : root_med_regl
PlantAssociated : root_med_solid
PlantAssociated : root_med_suppl
PlantAssociated : salinity
PlantAssociated : salt_regm
PlantAssociated : samp_capt_status
PlantAssociated : samp_dis_stage
PlantAssociated : samp_store_dur
PlantAssociated : samp_store_loc
PlantAssociated : samp_store_temp
PlantAssociated : samp_vol_we_dna_ext
PlantAssociated : season_environment
PlantAssociated : standing_water_regm
PlantAssociated : temp
PlantAssociated : tiss_cult_growth_med
PlantAssociated : water_temp_regm
PlantAssociated : watering_regm
Inheritance
- EnvironmentalPackage
- PlantAssociated
Slots
Name | Cardinality and Range | Description | Inheritance |
---|---|---|---|
elev | 0..1 recommended String |
placeholder description; linter will ignore this | direct |
air_temp_regm | 0..1 String |
placeholder description; linter will ignore this | direct |
ances_data | 0..1 String |
placeholder description; linter will ignore this | direct |
antibiotic_regm | 0..1 String |
placeholder description; linter will ignore this | direct |
biol_stat | 0..1 String |
placeholder description; linter will ignore this | direct |
biotic_regm | 0..1 String |
placeholder description; linter will ignore this | direct |
chem_administration | 0..1 String |
placeholder description; linter will ignore this | direct |
chem_mutagen | 0..1 String |
placeholder description; linter will ignore this | direct |
climate_environment | 0..1 String |
placeholder description; linter will ignore this | direct |
cult_root_med | 0..1 String |
placeholder description; linter will ignore this | direct |
fertilizer_regm | 0..1 String |
placeholder description; linter will ignore this | direct |
fungicide_regm | 0..1 String |
placeholder description; linter will ignore this | direct |
gaseous_environment | 0..1 String |
placeholder description; linter will ignore this | direct |
genetic_mod | 0..1 String |
placeholder description; linter will ignore this | direct |
gravity | 0..1 String |
placeholder description; linter will ignore this | direct |
growth_facil | 0..1 String |
placeholder description; linter will ignore this | direct |
growth_habit | 0..1 String |
placeholder description; linter will ignore this | direct |
growth_hormone_regm | 0..1 String |
placeholder description; linter will ignore this | direct |
herbicide_regm | 0..1 String |
placeholder description; linter will ignore this | direct |
host_age | 0..1 String |
placeholder description; linter will ignore this | direct |
host_common_name | 0..1 String |
placeholder description; linter will ignore this | direct |
host_disease_stat | 0..1 String |
placeholder description; linter will ignore this | direct |
host_dry_mass | 0..1 String |
placeholder description; linter will ignore this | direct |
host_genotype | 0..1 String |
placeholder description; linter will ignore this | direct |
host_height | 0..1 String |
placeholder description; linter will ignore this | direct |
host_length | 0..1 String |
placeholder description; linter will ignore this | direct |
host_life_stage | 0..1 String |
placeholder description; linter will ignore this | direct |
host_phenotype | 0..1 String |
placeholder description; linter will ignore this | direct |
host_subspecf_genlin | 0..1 String |
placeholder description; linter will ignore this | direct |
host_taxid | 0..1 Integer |
placeholder description; linter will ignore this | direct |
host_tot_mass | 0..1 String |
placeholder description; linter will ignore this | direct |
host_wet_mass | 0..1 String |
placeholder description; linter will ignore this | direct |
humidity_regm | 0..1 String |
placeholder description; linter will ignore this | direct |
light_regm | 0..1 String |
placeholder description; linter will ignore this | direct |
mechanical_damage | 0..1 String |
placeholder description; linter will ignore this | direct |
mineral_nutr_regm | 0..1 String |
placeholder description; linter will ignore this | direct |
misc_param | 0..1 String |
placeholder description; linter will ignore this | direct |
non_mineral_nutr_regm | 0..1 String |
placeholder description; linter will ignore this | direct |
organism_count | 0..1 String |
placeholder description; linter will ignore this | direct |
oxy_stat_samp | 0..1 OXYSTATSAMPENUM |
placeholder description; linter will ignore this | direct |
perturbation | 0..1 String |
placeholder description; linter will ignore this | direct |
pesticide_regm | 0..1 String |
placeholder description; linter will ignore this | direct |
ph_regm | 0..1 String |
placeholder description; linter will ignore this | direct |
plant_growth_med | 0..1 String |
placeholder description; linter will ignore this | direct |
plant_product | 0..1 String |
placeholder description; linter will ignore this | direct |
plant_sex | 0..1 String |
placeholder description; linter will ignore this | direct |
plant_struc | 0..1 String |
placeholder description; linter will ignore this | direct |
radiation_regm | 0..1 String |
placeholder description; linter will ignore this | direct |
rainfall_regm | 0..1 String |
placeholder description; linter will ignore this | direct |
root_cond | 0..1 String |
placeholder description; linter will ignore this | direct |
root_med_carbon | 0..1 String |
placeholder description; linter will ignore this | direct |
root_med_macronutr | 0..1 String |
placeholder description; linter will ignore this | direct |
root_med_micronutr | 0..1 String |
placeholder description; linter will ignore this | direct |
root_med_ph | 0..1 Float |
placeholder description; linter will ignore this | direct |
root_med_regl | 0..1 String |
placeholder description; linter will ignore this | direct |
root_med_solid | 0..1 String |
placeholder description; linter will ignore this | direct |
root_med_suppl | 0..1 String |
placeholder description; linter will ignore this | direct |
salinity | 0..1 String |
placeholder description; linter will ignore this | direct |
salt_regm | 0..1 String |
placeholder description; linter will ignore this | direct |
samp_capt_status | 0..1 String |
placeholder description; linter will ignore this | direct |
samp_dis_stage | 0..1 String |
placeholder description; linter will ignore this | direct |
samp_store_dur | 0..1 String |
placeholder description; linter will ignore this | direct |
samp_store_loc | 0..1 String |
placeholder description; linter will ignore this | direct |
samp_store_temp | 0..1 String |
placeholder description; linter will ignore this | direct |
samp_vol_we_dna_ext | 0..1 String |
placeholder description; linter will ignore this | direct |
season_environment | 0..1 String |
placeholder description; linter will ignore this | direct |
standing_water_regm | 0..1 String |
placeholder description; linter will ignore this | direct |
temp | 0..1 String |
placeholder description; linter will ignore this | direct |
tiss_cult_growth_med | 0..1 String |
placeholder description; linter will ignore this | direct |
water_temp_regm | 0..1 String |
placeholder description; linter will ignore this | direct |
watering_regm | 0..1 String |
placeholder description; linter will ignore this | direct |
project_name | 1..1 String |
placeholder description; linter will ignore this | direct |
Identifier and Mapping Information
Schema Source
- from schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
Mappings
Mapping Type | Mapped Value |
---|---|
self | MIXS:0016010 |
native | MIXS:PlantAssociated |
LinkML Source
Direct
name: PlantAssociated
description: placeholder description; linter will ignore this
title: plant-associated
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
is_a: EnvironmentalPackage
slots:
- elev
- air_temp_regm
- ances_data
- antibiotic_regm
- biol_stat
- biotic_regm
- chem_administration
- chem_mutagen
- climate_environment
- cult_root_med
- fertilizer_regm
- fungicide_regm
- gaseous_environment
- genetic_mod
- gravity
- growth_facil
- growth_habit
- growth_hormone_regm
- herbicide_regm
- host_age
- host_common_name
- host_disease_stat
- host_dry_mass
- host_genotype
- host_height
- host_length
- host_life_stage
- host_phenotype
- host_subspecf_genlin
- host_taxid
- host_tot_mass
- host_wet_mass
- humidity_regm
- light_regm
- mechanical_damage
- mineral_nutr_regm
- misc_param
- non_mineral_nutr_regm
- organism_count
- oxy_stat_samp
- perturbation
- pesticide_regm
- ph_regm
- plant_growth_med
- plant_product
- plant_sex
- plant_struc
- radiation_regm
- rainfall_regm
- root_cond
- root_med_carbon
- root_med_macronutr
- root_med_micronutr
- root_med_ph
- root_med_regl
- root_med_solid
- root_med_suppl
- salinity
- salt_regm
- samp_capt_status
- samp_dis_stage
- samp_store_dur
- samp_store_loc
- samp_store_temp
- samp_vol_we_dna_ext
- season_environment
- standing_water_regm
- temp
- tiss_cult_growth_med
- water_temp_regm
- watering_regm
- project_name
slot_usage:
air_temp_regm:
name: air_temp_regm
domain_of:
- PlantAssociated
ances_data:
name: ances_data
domain_of:
- Agriculture
- FoodFarmEnvironment
- HostAssociated
- PlantAssociated
antibiotic_regm:
name: antibiotic_regm
domain_of:
- PlantAssociated
biol_stat:
name: biol_stat
domain_of:
- HostAssociated
- PlantAssociated
biotic_regm:
name: biotic_regm
domain_of:
- FoodFarmEnvironment
- PlantAssociated
chem_administration:
name: chem_administration
domain_of:
- Agriculture
- Air
- FoodFarmEnvironment
- HostAssociated
- HumanAssociated
- HumanGut
- HumanOral
- HumanSkin
- HumanVaginal
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- PlantAssociated
- Sediment
- SymbiontAssociated
- WastewaterSludge
- Water
chem_mutagen:
name: chem_mutagen
domain_of:
- PlantAssociated
climate_environment:
name: climate_environment
domain_of:
- Agriculture
- PlantAssociated
cult_root_med:
name: cult_root_med
domain_of:
- PlantAssociated
elev:
name: elev
domain_of:
- Agriculture
- Air
- Checklist
- HostAssociated
- HydrocarbonResourcesCores
- MicrobialMatBiofilm
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- MiscellaneousNaturalOrArtificialEnvironment
- Miuvig
- PlantAssociated
- Sediment
- Soil
- SymbiontAssociated
- Water
recommended: true
fertilizer_regm:
name: fertilizer_regm
domain_of:
- PlantAssociated
fungicide_regm:
name: fungicide_regm
domain_of:
- Agriculture
- PlantAssociated
gaseous_environment:
name: gaseous_environment
domain_of:
- Agriculture
- PlantAssociated
genetic_mod:
name: genetic_mod
domain_of:
- Agriculture
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
- HostAssociated
- PlantAssociated
gravity:
name: gravity
domain_of:
- PlantAssociated
growth_facil:
name: growth_facil
domain_of:
- PlantAssociated
growth_habit:
name: growth_habit
domain_of:
- FoodFarmEnvironment
- PlantAssociated
growth_hormone_regm:
name: growth_hormone_regm
domain_of:
- PlantAssociated
herbicide_regm:
name: herbicide_regm
domain_of:
- Agriculture
- PlantAssociated
host_age:
name: host_age
domain_of:
- Agriculture
- FoodFarmEnvironment
- HostAssociated
- HumanAssociated
- HumanGut
- HumanOral
- HumanSkin
- HumanVaginal
- PlantAssociated
- SymbiontAssociated
host_common_name:
name: host_common_name
domain_of:
- Agriculture
- HostAssociated
- PlantAssociated
- SymbiontAssociated
host_disease_stat:
name: host_disease_stat
domain_of:
- Agriculture
- Checklist
- FoodFarmEnvironment
- HostAssociated
- HumanAssociated
- HumanGut
- HumanOral
- HumanSkin
- HumanVaginal
- MigsBa
- MigsEu
- MigsVi
- Miuvig
- PlantAssociated
host_dry_mass:
name: host_dry_mass
domain_of:
- Agriculture
- FoodFarmEnvironment
- HostAssociated
- PlantAssociated
- SymbiontAssociated
host_genotype:
name: host_genotype
domain_of:
- Agriculture
- FoodFarmEnvironment
- HostAssociated
- HumanAssociated
- HumanGut
- HumanOral
- HumanSkin
- HumanVaginal
- PlantAssociated
- SymbiontAssociated
host_height:
name: host_height
domain_of:
- Agriculture
- FoodFarmEnvironment
- HostAssociated
- HumanAssociated
- HumanGut
- HumanOral
- HumanSkin
- HumanVaginal
- PlantAssociated
- SymbiontAssociated
host_length:
name: host_length
domain_of:
- Agriculture
- FoodFarmEnvironment
- HostAssociated
- PlantAssociated
- SymbiontAssociated
host_life_stage:
name: host_life_stage
domain_of:
- Agriculture
- HostAssociated
- PlantAssociated
- SymbiontAssociated
host_phenotype:
name: host_phenotype
domain_of:
- Agriculture
- FoodFarmEnvironment
- HostAssociated
- HumanAssociated
- HumanGut
- HumanOral
- HumanSkin
- HumanVaginal
- PlantAssociated
- SymbiontAssociated
host_subspecf_genlin:
name: host_subspecf_genlin
domain_of:
- Agriculture
- FoodFarmEnvironment
- HostAssociated
- PlantAssociated
host_taxid:
name: host_taxid
domain_of:
- Agriculture
- FoodFarmEnvironment
- HostAssociated
- PlantAssociated
- SymbiontAssociated
host_tot_mass:
name: host_tot_mass
domain_of:
- Agriculture
- FoodFarmEnvironment
- HostAssociated
- HumanAssociated
- HumanGut
- HumanOral
- HumanSkin
- HumanVaginal
- PlantAssociated
- SymbiontAssociated
host_wet_mass:
name: host_wet_mass
domain_of:
- PlantAssociated
humidity_regm:
name: humidity_regm
domain_of:
- PlantAssociated
light_regm:
name: light_regm
domain_of:
- PlantAssociated
mechanical_damage:
name: mechanical_damage
domain_of:
- FoodFarmEnvironment
- PlantAssociated
mineral_nutr_regm:
name: mineral_nutr_regm
domain_of:
- PlantAssociated
misc_param:
name: misc_param
domain_of:
- Agriculture
- Air
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
- HostAssociated
- HumanAssociated
- HumanGut
- HumanOral
- HumanSkin
- HumanVaginal
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- PlantAssociated
- Sediment
- Soil
- SymbiontAssociated
- WastewaterSludge
- Water
non_mineral_nutr_regm:
name: non_mineral_nutr_regm
domain_of:
- Agriculture
- PlantAssociated
organism_count:
name: organism_count
domain_of:
- Agriculture
- Air
- BuiltEnvironment
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
- HostAssociated
- HumanAssociated
- HumanGut
- HumanOral
- HumanSkin
- HumanVaginal
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- PlantAssociated
- Sediment
- SymbiontAssociated
- WastewaterSludge
- Water
oxy_stat_samp:
name: oxy_stat_samp
domain_of:
- Agriculture
- Air
- HostAssociated
- HumanAssociated
- HumanGut
- HumanOral
- HumanSkin
- HumanVaginal
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- PlantAssociated
- Sediment
- SymbiontAssociated
- WastewaterSludge
- Water
perturbation:
name: perturbation
domain_of:
- Agriculture
- Air
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodHumanFoods
- HostAssociated
- HumanAssociated
- HumanGut
- HumanOral
- HumanSkin
- HumanVaginal
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- PlantAssociated
- Sediment
- SymbiontAssociated
- WastewaterSludge
- Water
pesticide_regm:
name: pesticide_regm
domain_of:
- Agriculture
- PlantAssociated
ph_regm:
name: ph_regm
domain_of:
- Agriculture
- PlantAssociated
plant_growth_med:
name: plant_growth_med
domain_of:
- Agriculture
- FoodFarmEnvironment
- PlantAssociated
plant_product:
name: plant_product
domain_of:
- Agriculture
- PlantAssociated
plant_sex:
name: plant_sex
domain_of:
- PlantAssociated
plant_struc:
name: plant_struc
domain_of:
- Agriculture
- PlantAssociated
project_name:
name: project_name
domain_of:
- Air
- BuiltEnvironment
- Checklist
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
- HostAssociated
- HumanAssociated
- HumanGut
- HumanOral
- HumanSkin
- HumanVaginal
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- MicrobialMatBiofilm
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- MiscellaneousNaturalOrArtificialEnvironment
- Miuvig
- PlantAssociated
- Sediment
- Soil
- SymbiontAssociated
- WastewaterSludge
- Water
required: true
radiation_regm:
name: radiation_regm
domain_of:
- PlantAssociated
rainfall_regm:
name: rainfall_regm
domain_of:
- PlantAssociated
root_cond:
name: root_cond
domain_of:
- FoodFarmEnvironment
- PlantAssociated
root_med_carbon:
name: root_med_carbon
domain_of:
- Agriculture
- FoodFarmEnvironment
- PlantAssociated
root_med_macronutr:
name: root_med_macronutr
domain_of:
- Agriculture
- FoodFarmEnvironment
- PlantAssociated
root_med_micronutr:
name: root_med_micronutr
domain_of:
- FoodFarmEnvironment
- PlantAssociated
root_med_ph:
name: root_med_ph
domain_of:
- Agriculture
- FoodFarmEnvironment
- PlantAssociated
root_med_regl:
name: root_med_regl
domain_of:
- PlantAssociated
root_med_solid:
name: root_med_solid
domain_of:
- PlantAssociated
root_med_suppl:
name: root_med_suppl
domain_of:
- PlantAssociated
salinity:
name: salinity
domain_of:
- Air
- FoodFarmEnvironment
- HostAssociated
- HumanAssociated
- HumanGut
- HumanOral
- HumanSkin
- HumanVaginal
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- PlantAssociated
- Sediment
- WastewaterSludge
- Water
salt_regm:
name: salt_regm
domain_of:
- Agriculture
- PlantAssociated
samp_capt_status:
name: samp_capt_status
domain_of:
- HostAssociated
- PlantAssociated
samp_dis_stage:
name: samp_dis_stage
domain_of:
- HostAssociated
- PlantAssociated
samp_store_dur:
name: samp_store_dur
domain_of:
- Agriculture
- Air
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
- HostAssociated
- HumanAssociated
- HumanGut
- HumanOral
- HumanSkin
- HumanVaginal
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- PlantAssociated
- Sediment
- SymbiontAssociated
- WastewaterSludge
- Water
samp_store_loc:
name: samp_store_loc
domain_of:
- Agriculture
- Air
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
- FoodHumanFoods
- HostAssociated
- HumanAssociated
- HumanGut
- HumanOral
- HumanSkin
- HumanVaginal
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- PlantAssociated
- Sediment
- SymbiontAssociated
- WastewaterSludge
- Water
samp_store_temp:
name: samp_store_temp
domain_of:
- Agriculture
- Air
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
- HostAssociated
- HumanAssociated
- HumanGut
- HumanOral
- HumanSkin
- HumanVaginal
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- PlantAssociated
- Sediment
- SymbiontAssociated
- WastewaterSludge
- Water
samp_vol_we_dna_ext:
name: samp_vol_we_dna_ext
domain_of:
- Agriculture
- Air
- Checklist
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
- HostAssociated
- HumanAssociated
- HumanGut
- HumanOral
- HumanSkin
- HumanVaginal
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- MicrobialMatBiofilm
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- MiscellaneousNaturalOrArtificialEnvironment
- Miuvig
- PlantAssociated
- Sediment
- Soil
- SymbiontAssociated
- WastewaterSludge
- Water
season_environment:
name: season_environment
domain_of:
- Agriculture
- PlantAssociated
standing_water_regm:
name: standing_water_regm
domain_of:
- Agriculture
- PlantAssociated
temp:
name: temp
domain_of:
- Agriculture
- Air
- Checklist
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodHumanFoods
- HostAssociated
- HumanAssociated
- HumanGut
- HumanOral
- HumanSkin
- HumanVaginal
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- MicrobialMatBiofilm
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- MiscellaneousNaturalOrArtificialEnvironment
- Miuvig
- PlantAssociated
- Sediment
- Soil
- SymbiontAssociated
- WastewaterSludge
- Water
tiss_cult_growth_med:
name: tiss_cult_growth_med
domain_of:
- PlantAssociated
water_temp_regm:
name: water_temp_regm
domain_of:
- Agriculture
- PlantAssociated
watering_regm:
name: watering_regm
domain_of:
- Agriculture
- PlantAssociated
class_uri: MIXS:0016010
Induced
name: PlantAssociated
description: placeholder description; linter will ignore this
title: plant-associated
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
is_a: EnvironmentalPackage
slot_usage:
air_temp_regm:
name: air_temp_regm
domain_of:
- PlantAssociated
ances_data:
name: ances_data
domain_of:
- Agriculture
- FoodFarmEnvironment
- HostAssociated
- PlantAssociated
antibiotic_regm:
name: antibiotic_regm
domain_of:
- PlantAssociated
biol_stat:
name: biol_stat
domain_of:
- HostAssociated
- PlantAssociated
biotic_regm:
name: biotic_regm
domain_of:
- FoodFarmEnvironment
- PlantAssociated
chem_administration:
name: chem_administration
domain_of:
- Agriculture
- Air
- FoodFarmEnvironment
- HostAssociated
- HumanAssociated
- HumanGut
- HumanOral
- HumanSkin
- HumanVaginal
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- PlantAssociated
- Sediment
- SymbiontAssociated
- WastewaterSludge
- Water
chem_mutagen:
name: chem_mutagen
domain_of:
- PlantAssociated
climate_environment:
name: climate_environment
domain_of:
- Agriculture
- PlantAssociated
cult_root_med:
name: cult_root_med
domain_of:
- PlantAssociated
elev:
name: elev
domain_of:
- Agriculture
- Air
- Checklist
- HostAssociated
- HydrocarbonResourcesCores
- MicrobialMatBiofilm
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- MiscellaneousNaturalOrArtificialEnvironment
- Miuvig
- PlantAssociated
- Sediment
- Soil
- SymbiontAssociated
- Water
recommended: true
fertilizer_regm:
name: fertilizer_regm
domain_of:
- PlantAssociated
fungicide_regm:
name: fungicide_regm
domain_of:
- Agriculture
- PlantAssociated
gaseous_environment:
name: gaseous_environment
domain_of:
- Agriculture
- PlantAssociated
genetic_mod:
name: genetic_mod
domain_of:
- Agriculture
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
- HostAssociated
- PlantAssociated
gravity:
name: gravity
domain_of:
- PlantAssociated
growth_facil:
name: growth_facil
domain_of:
- PlantAssociated
growth_habit:
name: growth_habit
domain_of:
- FoodFarmEnvironment
- PlantAssociated
growth_hormone_regm:
name: growth_hormone_regm
domain_of:
- PlantAssociated
herbicide_regm:
name: herbicide_regm
domain_of:
- Agriculture
- PlantAssociated
host_age:
name: host_age
domain_of:
- Agriculture
- FoodFarmEnvironment
- HostAssociated
- HumanAssociated
- HumanGut
- HumanOral
- HumanSkin
- HumanVaginal
- PlantAssociated
- SymbiontAssociated
host_common_name:
name: host_common_name
domain_of:
- Agriculture
- HostAssociated
- PlantAssociated
- SymbiontAssociated
host_disease_stat:
name: host_disease_stat
domain_of:
- Agriculture
- Checklist
- FoodFarmEnvironment
- HostAssociated
- HumanAssociated
- HumanGut
- HumanOral
- HumanSkin
- HumanVaginal
- MigsBa
- MigsEu
- MigsVi
- Miuvig
- PlantAssociated
host_dry_mass:
name: host_dry_mass
domain_of:
- Agriculture
- FoodFarmEnvironment
- HostAssociated
- PlantAssociated
- SymbiontAssociated
host_genotype:
name: host_genotype
domain_of:
- Agriculture
- FoodFarmEnvironment
- HostAssociated
- HumanAssociated
- HumanGut
- HumanOral
- HumanSkin
- HumanVaginal
- PlantAssociated
- SymbiontAssociated
host_height:
name: host_height
domain_of:
- Agriculture
- FoodFarmEnvironment
- HostAssociated
- HumanAssociated
- HumanGut
- HumanOral
- HumanSkin
- HumanVaginal
- PlantAssociated
- SymbiontAssociated
host_length:
name: host_length
domain_of:
- Agriculture
- FoodFarmEnvironment
- HostAssociated
- PlantAssociated
- SymbiontAssociated
host_life_stage:
name: host_life_stage
domain_of:
- Agriculture
- HostAssociated
- PlantAssociated
- SymbiontAssociated
host_phenotype:
name: host_phenotype
domain_of:
- Agriculture
- FoodFarmEnvironment
- HostAssociated
- HumanAssociated
- HumanGut
- HumanOral
- HumanSkin
- HumanVaginal
- PlantAssociated
- SymbiontAssociated
host_subspecf_genlin:
name: host_subspecf_genlin
domain_of:
- Agriculture
- FoodFarmEnvironment
- HostAssociated
- PlantAssociated
host_taxid:
name: host_taxid
domain_of:
- Agriculture
- FoodFarmEnvironment
- HostAssociated
- PlantAssociated
- SymbiontAssociated
host_tot_mass:
name: host_tot_mass
domain_of:
- Agriculture
- FoodFarmEnvironment
- HostAssociated
- HumanAssociated
- HumanGut
- HumanOral
- HumanSkin
- HumanVaginal
- PlantAssociated
- SymbiontAssociated
host_wet_mass:
name: host_wet_mass
domain_of:
- PlantAssociated
humidity_regm:
name: humidity_regm
domain_of:
- PlantAssociated
light_regm:
name: light_regm
domain_of:
- PlantAssociated
mechanical_damage:
name: mechanical_damage
domain_of:
- FoodFarmEnvironment
- PlantAssociated
mineral_nutr_regm:
name: mineral_nutr_regm
domain_of:
- PlantAssociated
misc_param:
name: misc_param
domain_of:
- Agriculture
- Air
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
- HostAssociated
- HumanAssociated
- HumanGut
- HumanOral
- HumanSkin
- HumanVaginal
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- PlantAssociated
- Sediment
- Soil
- SymbiontAssociated
- WastewaterSludge
- Water
non_mineral_nutr_regm:
name: non_mineral_nutr_regm
domain_of:
- Agriculture
- PlantAssociated
organism_count:
name: organism_count
domain_of:
- Agriculture
- Air
- BuiltEnvironment
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
- HostAssociated
- HumanAssociated
- HumanGut
- HumanOral
- HumanSkin
- HumanVaginal
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- PlantAssociated
- Sediment
- SymbiontAssociated
- WastewaterSludge
- Water
oxy_stat_samp:
name: oxy_stat_samp
domain_of:
- Agriculture
- Air
- HostAssociated
- HumanAssociated
- HumanGut
- HumanOral
- HumanSkin
- HumanVaginal
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- PlantAssociated
- Sediment
- SymbiontAssociated
- WastewaterSludge
- Water
perturbation:
name: perturbation
domain_of:
- Agriculture
- Air
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodHumanFoods
- HostAssociated
- HumanAssociated
- HumanGut
- HumanOral
- HumanSkin
- HumanVaginal
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- PlantAssociated
- Sediment
- SymbiontAssociated
- WastewaterSludge
- Water
pesticide_regm:
name: pesticide_regm
domain_of:
- Agriculture
- PlantAssociated
ph_regm:
name: ph_regm
domain_of:
- Agriculture
- PlantAssociated
plant_growth_med:
name: plant_growth_med
domain_of:
- Agriculture
- FoodFarmEnvironment
- PlantAssociated
plant_product:
name: plant_product
domain_of:
- Agriculture
- PlantAssociated
plant_sex:
name: plant_sex
domain_of:
- PlantAssociated
plant_struc:
name: plant_struc
domain_of:
- Agriculture
- PlantAssociated
project_name:
name: project_name
domain_of:
- Air
- BuiltEnvironment
- Checklist
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
- HostAssociated
- HumanAssociated
- HumanGut
- HumanOral
- HumanSkin
- HumanVaginal
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- MicrobialMatBiofilm
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- MiscellaneousNaturalOrArtificialEnvironment
- Miuvig
- PlantAssociated
- Sediment
- Soil
- SymbiontAssociated
- WastewaterSludge
- Water
required: true
radiation_regm:
name: radiation_regm
domain_of:
- PlantAssociated
rainfall_regm:
name: rainfall_regm
domain_of:
- PlantAssociated
root_cond:
name: root_cond
domain_of:
- FoodFarmEnvironment
- PlantAssociated
root_med_carbon:
name: root_med_carbon
domain_of:
- Agriculture
- FoodFarmEnvironment
- PlantAssociated
root_med_macronutr:
name: root_med_macronutr
domain_of:
- Agriculture
- FoodFarmEnvironment
- PlantAssociated
root_med_micronutr:
name: root_med_micronutr
domain_of:
- FoodFarmEnvironment
- PlantAssociated
root_med_ph:
name: root_med_ph
domain_of:
- Agriculture
- FoodFarmEnvironment
- PlantAssociated
root_med_regl:
name: root_med_regl
domain_of:
- PlantAssociated
root_med_solid:
name: root_med_solid
domain_of:
- PlantAssociated
root_med_suppl:
name: root_med_suppl
domain_of:
- PlantAssociated
salinity:
name: salinity
domain_of:
- Air
- FoodFarmEnvironment
- HostAssociated
- HumanAssociated
- HumanGut
- HumanOral
- HumanSkin
- HumanVaginal
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- PlantAssociated
- Sediment
- WastewaterSludge
- Water
salt_regm:
name: salt_regm
domain_of:
- Agriculture
- PlantAssociated
samp_capt_status:
name: samp_capt_status
domain_of:
- HostAssociated
- PlantAssociated
samp_dis_stage:
name: samp_dis_stage
domain_of:
- HostAssociated
- PlantAssociated
samp_store_dur:
name: samp_store_dur
domain_of:
- Agriculture
- Air
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
- HostAssociated
- HumanAssociated
- HumanGut
- HumanOral
- HumanSkin
- HumanVaginal
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- PlantAssociated
- Sediment
- SymbiontAssociated
- WastewaterSludge
- Water
samp_store_loc:
name: samp_store_loc
domain_of:
- Agriculture
- Air
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
- FoodHumanFoods
- HostAssociated
- HumanAssociated
- HumanGut
- HumanOral
- HumanSkin
- HumanVaginal
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- PlantAssociated
- Sediment
- SymbiontAssociated
- WastewaterSludge
- Water
samp_store_temp:
name: samp_store_temp
domain_of:
- Agriculture
- Air
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
- HostAssociated
- HumanAssociated
- HumanGut
- HumanOral
- HumanSkin
- HumanVaginal
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- PlantAssociated
- Sediment
- SymbiontAssociated
- WastewaterSludge
- Water
samp_vol_we_dna_ext:
name: samp_vol_we_dna_ext
domain_of:
- Agriculture
- Air
- Checklist
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
- HostAssociated
- HumanAssociated
- HumanGut
- HumanOral
- HumanSkin
- HumanVaginal
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- MicrobialMatBiofilm
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- MiscellaneousNaturalOrArtificialEnvironment
- Miuvig
- PlantAssociated
- Sediment
- Soil
- SymbiontAssociated
- WastewaterSludge
- Water
season_environment:
name: season_environment
domain_of:
- Agriculture
- PlantAssociated
standing_water_regm:
name: standing_water_regm
domain_of:
- Agriculture
- PlantAssociated
temp:
name: temp
domain_of:
- Agriculture
- Air
- Checklist
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodHumanFoods
- HostAssociated
- HumanAssociated
- HumanGut
- HumanOral
- HumanSkin
- HumanVaginal
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- MicrobialMatBiofilm
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- MiscellaneousNaturalOrArtificialEnvironment
- Miuvig
- PlantAssociated
- Sediment
- Soil
- SymbiontAssociated
- WastewaterSludge
- Water
tiss_cult_growth_med:
name: tiss_cult_growth_med
domain_of:
- PlantAssociated
water_temp_regm:
name: water_temp_regm
domain_of:
- Agriculture
- PlantAssociated
watering_regm:
name: watering_regm
domain_of:
- Agriculture
- PlantAssociated
attributes:
elev:
name: elev
description: placeholder description; linter will ignore this
title: elevation
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000093
alias: elev
owner: PlantAssociated
domain_of:
- Agriculture
- Air
- Checklist
- HostAssociated
- HydrocarbonResourcesCores
- MicrobialMatBiofilm
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- MiscellaneousNaturalOrArtificialEnvironment
- Miuvig
- PlantAssociated
- Sediment
- Soil
- SymbiontAssociated
- Water
range: string
recommended: true
pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
structured_pattern:
syntax: '{float} {unit}'
air_temp_regm:
name: air_temp_regm
description: placeholder description; linter will ignore this
title: air temperature regimen
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000551
alias: air_temp_regm
owner: PlantAssociated
domain_of:
- PlantAssociated
range: string
ances_data:
name: ances_data
description: placeholder description; linter will ignore this
title: ancestral data
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000247
alias: ances_data
owner: PlantAssociated
domain_of:
- Agriculture
- FoodFarmEnvironment
- HostAssociated
- PlantAssociated
range: string
pattern: '[^s\|][^\r\n\t\|]*'
structured_pattern:
syntax: '{free_text}'
antibiotic_regm:
name: antibiotic_regm
description: placeholder description; linter will ignore this
title: antibiotic regimen
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000553
alias: antibiotic_regm
owner: PlantAssociated
domain_of:
- PlantAssociated
range: string
pattern: (([^s\|][^\r\n\t\|]*;[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*;R[+-]?[1-9][0-9]*/\d{4}-\d\d-\d\d[Tt]\d\d:\d\d(:\d\d(\.\d+)?([Zz]|[\+\-]\d\d:\d\d)?)?/\d{4}-\d\d-\d\d[Tt]\d\d:\d\d(:\d\d(\.\d+)?([Zz]|[\+\-]\d\d:\d\d)?)?/P(?=\d+[YMWD])(\d+Y)?(\d+M)?(\d+W)?(\d+D)?(T(?=\d+[HMS])(\d+H)?(\d+M)?(\d+S)?)?)\|)*[^s\|][^\r\n\t\|]*;[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)?
[^s\|][^\r\n\t\|]*;R[+-]?[1-9][0-9]*/\d{4}-\d\d-\d\d[Tt]\d\d:\d\d(:\d\d(\.\d+)?([Zz]|[\+\-]\d\d:\d\d)?)?/\d{4}-\d\d-\d\d[Tt]\d\d:\d\d(:\d\d(\.\d+)?([Zz]|[\+\-]\d\d:\d\d)?)?/P(?=\d+[YMWD])(\d+Y)?(\d+M)?(\d+W)?(\d+D)?(T(?=\d+[HMS])(\d+H)?(\d+M)?(\d+S)?)?
structured_pattern:
syntax: (({free_text};{float} {unit};R{integer}/{start_time}/{end_time}/{period})\|)*{free_text};{float}
{unit};R{integer}/{start_time}/{end_time}/{period}
biol_stat:
name: biol_stat
description: placeholder description; linter will ignore this
title: biological status
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000858
alias: biol_stat
owner: PlantAssociated
domain_of:
- HostAssociated
- PlantAssociated
range: string
biotic_regm:
name: biotic_regm
description: placeholder description; linter will ignore this
title: biotic regimen
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0001038
alias: biotic_regm
owner: PlantAssociated
domain_of:
- FoodFarmEnvironment
- PlantAssociated
range: string
pattern: '[^s\|][^\r\n\t\|]*'
structured_pattern:
syntax: '{free_text}'
chem_administration:
name: chem_administration
description: placeholder description; linter will ignore this
title: chemical administration
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000751
alias: chem_administration
owner: PlantAssociated
domain_of:
- Agriculture
- Air
- FoodFarmEnvironment
- HostAssociated
- HumanAssociated
- HumanGut
- HumanOral
- HumanSkin
- HumanVaginal
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- PlantAssociated
- Sediment
- SymbiontAssociated
- WastewaterSludge
- Water
range: string
chem_mutagen:
name: chem_mutagen
description: placeholder description; linter will ignore this
title: chemical mutagen
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000555
alias: chem_mutagen
owner: PlantAssociated
domain_of:
- PlantAssociated
range: string
pattern: '[^s\|][^\r\n\t\|]*;[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*;R[+-]?[1-9][0-9]*/\d{4}-\d\d-\d\d[Tt]\d\d:\d\d(:\d\d(\.\d+)?([Zz]|[\+\-]\d\d:\d\d)?)?/\d{4}-\d\d-\d\d[Tt]\d\d:\d\d(:\d\d(\.\d+)?([Zz]|[\+\-]\d\d:\d\d)?)?/P(?=\d+[YMWD])(\d+Y)?(\d+M)?(\d+W)?(\d+D)?(T(?=\d+[HMS])(\d+H)?(\d+M)?(\d+S)?)?'
structured_pattern:
syntax: '{free_text};{float} {unit};R{integer}/{start_time}/{end_time}/{period}'
climate_environment:
name: climate_environment
description: placeholder description; linter will ignore this
title: climate environment
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0001040
alias: climate_environment
owner: PlantAssociated
domain_of:
- Agriculture
- PlantAssociated
range: string
cult_root_med:
name: cult_root_med
description: placeholder description; linter will ignore this
title: culture rooting medium
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0001041
alias: cult_root_med
owner: PlantAssociated
domain_of:
- PlantAssociated
range: string
fertilizer_regm:
name: fertilizer_regm
description: placeholder description; linter will ignore this
title: fertilizer regimen
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000556
alias: fertilizer_regm
owner: PlantAssociated
domain_of:
- PlantAssociated
range: string
pattern: '[^s\|][^\r\n\t\|]*;[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*;R[+-]?[1-9][0-9]*/\d{4}-\d\d-\d\d[Tt]\d\d:\d\d(:\d\d(\.\d+)?([Zz]|[\+\-]\d\d:\d\d)?)?/\d{4}-\d\d-\d\d[Tt]\d\d:\d\d(:\d\d(\.\d+)?([Zz]|[\+\-]\d\d:\d\d)?)?/P(?=\d+[YMWD])(\d+Y)?(\d+M)?(\d+W)?(\d+D)?(T(?=\d+[HMS])(\d+H)?(\d+M)?(\d+S)?)?'
structured_pattern:
syntax: '{free_text};{float} {unit};R{integer}/{start_time}/{end_time}/{period}'
fungicide_regm:
name: fungicide_regm
description: placeholder description; linter will ignore this
title: fungicide regimen
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000557
alias: fungicide_regm
owner: PlantAssociated
domain_of:
- Agriculture
- PlantAssociated
range: string
pattern: '[^s\|][^\r\n\t\|]*;[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*;R[+-]?[1-9][0-9]*/\d{4}-\d\d-\d\d[Tt]\d\d:\d\d(:\d\d(\.\d+)?([Zz]|[\+\-]\d\d:\d\d)?)?/\d{4}-\d\d-\d\d[Tt]\d\d:\d\d(:\d\d(\.\d+)?([Zz]|[\+\-]\d\d:\d\d)?)?/P(?=\d+[YMWD])(\d+Y)?(\d+M)?(\d+W)?(\d+D)?(T(?=\d+[HMS])(\d+H)?(\d+M)?(\d+S)?)?'
structured_pattern:
syntax: '{free_text};{float} {unit};R{integer}/{start_time}/{end_time}/{period}'
gaseous_environment:
name: gaseous_environment
description: placeholder description; linter will ignore this
title: gaseous environment
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000558
alias: gaseous_environment
owner: PlantAssociated
domain_of:
- Agriculture
- PlantAssociated
range: string
pattern: '[^s\|][^\r\n\t\|]*;[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*;R[+-]?[1-9][0-9]*/\d{4}-\d\d-\d\d[Tt]\d\d:\d\d(:\d\d(\.\d+)?([Zz]|[\+\-]\d\d:\d\d)?)?/\d{4}-\d\d-\d\d[Tt]\d\d:\d\d(:\d\d(\.\d+)?([Zz]|[\+\-]\d\d:\d\d)?)?/P(?=\d+[YMWD])(\d+Y)?(\d+M)?(\d+W)?(\d+D)?(T(?=\d+[HMS])(\d+H)?(\d+M)?(\d+S)?)?'
structured_pattern:
syntax: '{free_text};{float} {unit};R{integer}/{start_time}/{end_time}/{period}'
genetic_mod:
name: genetic_mod
description: placeholder description; linter will ignore this
title: genetic modification
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000859
alias: genetic_mod
owner: PlantAssociated
domain_of:
- Agriculture
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
- HostAssociated
- PlantAssociated
range: string
pattern: (10.\d{4,9}/[-._;()/:a-zA-Z0-9]+)|(PMID:(\d{7,8}))|((?:https?://)?(?:www\.)?[\w-]+(?:\.[\w-]+)+[\w.,@?^=%&:/~+#-]*[\w@?^=%&/~+#-])|([^s\|][^\r\n\t\|]*)
structured_pattern:
syntax: ({DOI})|({PMID})|({URL})|({free_text})
gravity:
name: gravity
description: placeholder description; linter will ignore this
title: gravity
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000559
alias: gravity
owner: PlantAssociated
domain_of:
- PlantAssociated
range: string
growth_facil:
name: growth_facil
description: placeholder description; linter will ignore this
title: growth facility
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0001043
alias: growth_facil
owner: PlantAssociated
domain_of:
- PlantAssociated
range: string
growth_habit:
name: growth_habit
description: placeholder description; linter will ignore this
title: growth habit
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0001044
alias: growth_habit
owner: PlantAssociated
domain_of:
- FoodFarmEnvironment
- PlantAssociated
range: string
growth_hormone_regm:
name: growth_hormone_regm
description: placeholder description; linter will ignore this
title: growth hormone regimen
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000560
alias: growth_hormone_regm
owner: PlantAssociated
domain_of:
- PlantAssociated
range: string
pattern: '[^s\|][^\r\n\t\|]*;[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*;R[+-]?[1-9][0-9]*/\d{4}-\d\d-\d\d[Tt]\d\d:\d\d(:\d\d(\.\d+)?([Zz]|[\+\-]\d\d:\d\d)?)?/\d{4}-\d\d-\d\d[Tt]\d\d:\d\d(:\d\d(\.\d+)?([Zz]|[\+\-]\d\d:\d\d)?)?/P(?=\d+[YMWD])(\d+Y)?(\d+M)?(\d+W)?(\d+D)?(T(?=\d+[HMS])(\d+H)?(\d+M)?(\d+S)?)?'
structured_pattern:
syntax: '{free_text};{float} {unit};R{integer}/{start_time}/{end_time}/{period}'
herbicide_regm:
name: herbicide_regm
description: placeholder description; linter will ignore this
title: herbicide regimen
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000561
alias: herbicide_regm
owner: PlantAssociated
domain_of:
- Agriculture
- PlantAssociated
range: string
pattern: '[^s\|][^\r\n\t\|]*;[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*;R[+-]?[1-9][0-9]*/\d{4}-\d\d-\d\d[Tt]\d\d:\d\d(:\d\d(\.\d+)?([Zz]|[\+\-]\d\d:\d\d)?)?/\d{4}-\d\d-\d\d[Tt]\d\d:\d\d(:\d\d(\.\d+)?([Zz]|[\+\-]\d\d:\d\d)?)?/P(?=\d+[YMWD])(\d+Y)?(\d+M)?(\d+W)?(\d+D)?(T(?=\d+[HMS])(\d+H)?(\d+M)?(\d+S)?)?'
structured_pattern:
syntax: '{free_text};{float} {unit};R{integer}/{start_time}/{end_time}/{period}'
host_age:
name: host_age
description: placeholder description; linter will ignore this
title: host age
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000255
alias: host_age
owner: PlantAssociated
domain_of:
- Agriculture
- FoodFarmEnvironment
- HostAssociated
- HumanAssociated
- HumanGut
- HumanOral
- HumanSkin
- HumanVaginal
- PlantAssociated
- SymbiontAssociated
range: string
pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
structured_pattern:
syntax: '{float} {unit}'
host_common_name:
name: host_common_name
description: placeholder description; linter will ignore this
title: host common name
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000248
alias: host_common_name
owner: PlantAssociated
domain_of:
- Agriculture
- HostAssociated
- PlantAssociated
- SymbiontAssociated
range: string
pattern: '[^s\|][^\r\n\t\|]*'
structured_pattern:
syntax: '{free_text}'
host_disease_stat:
name: host_disease_stat
description: placeholder description; linter will ignore this
title: host disease status
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000031
alias: host_disease_stat
owner: PlantAssociated
domain_of:
- Agriculture
- Checklist
- FoodFarmEnvironment
- HostAssociated
- HumanAssociated
- HumanGut
- HumanOral
- HumanSkin
- HumanVaginal
- MigsBa
- MigsEu
- MigsVi
- Miuvig
- PlantAssociated
range: string
pattern: ((([^s\|][^\r\n\t\|]* [[a-zA-Z]+:[0-9]+])|[^s\|][^\r\n\t\|]*)\|)*(([^s\|][^\r\n\t\|]*
[[a-zA-Z]+:[0-9]+])|[^s\|][^\r\n\t\|]*)
structured_pattern:
syntax: ((({term_label} [{term_id}])|{free_text})\|)*(({term_label} [{term_id}])|{free_text})
host_dry_mass:
name: host_dry_mass
description: placeholder description; linter will ignore this
title: host dry mass
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000257
alias: host_dry_mass
owner: PlantAssociated
domain_of:
- Agriculture
- FoodFarmEnvironment
- HostAssociated
- PlantAssociated
- SymbiontAssociated
range: string
pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
structured_pattern:
syntax: '{float} {unit}'
host_genotype:
name: host_genotype
description: placeholder description; linter will ignore this
title: host genotype
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000365
alias: host_genotype
owner: PlantAssociated
domain_of:
- Agriculture
- FoodFarmEnvironment
- HostAssociated
- HumanAssociated
- HumanGut
- HumanOral
- HumanSkin
- HumanVaginal
- PlantAssociated
- SymbiontAssociated
range: string
pattern: '[^s\|][^\r\n\t\|]*'
structured_pattern:
syntax: '{free_text}'
host_height:
name: host_height
description: placeholder description; linter will ignore this
title: host height
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000264
alias: host_height
owner: PlantAssociated
domain_of:
- Agriculture
- FoodFarmEnvironment
- HostAssociated
- HumanAssociated
- HumanGut
- HumanOral
- HumanSkin
- HumanVaginal
- PlantAssociated
- SymbiontAssociated
range: string
pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
structured_pattern:
syntax: '{float} {unit}'
host_length:
name: host_length
description: placeholder description; linter will ignore this
title: host length
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000256
alias: host_length
owner: PlantAssociated
domain_of:
- Agriculture
- FoodFarmEnvironment
- HostAssociated
- PlantAssociated
- SymbiontAssociated
range: string
pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
structured_pattern:
syntax: '{float} {unit}'
host_life_stage:
name: host_life_stage
description: placeholder description; linter will ignore this
title: host life stage
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000251
alias: host_life_stage
owner: PlantAssociated
domain_of:
- Agriculture
- HostAssociated
- PlantAssociated
- SymbiontAssociated
range: string
pattern: '[^s\|][^\r\n\t\|]*'
structured_pattern:
syntax: '{free_text}'
host_phenotype:
name: host_phenotype
description: placeholder description; linter will ignore this
title: host phenotype
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000874
alias: host_phenotype
owner: PlantAssociated
domain_of:
- Agriculture
- FoodFarmEnvironment
- HostAssociated
- HumanAssociated
- HumanGut
- HumanOral
- HumanSkin
- HumanVaginal
- PlantAssociated
- SymbiontAssociated
range: string
pattern: '[^s\|][^\r\n\t\|]* [[a-zA-Z]+:[0-9]+]'
structured_pattern:
syntax: '{term_label} [{term_id}]'
host_subspecf_genlin:
name: host_subspecf_genlin
description: placeholder description; linter will ignore this
title: host subspecific genetic lineage
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0001318
alias: host_subspecf_genlin
owner: PlantAssociated
domain_of:
- Agriculture
- FoodFarmEnvironment
- HostAssociated
- PlantAssociated
range: string
host_taxid:
name: host_taxid
description: placeholder description; linter will ignore this
title: host taxid
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000250
alias: host_taxid
owner: PlantAssociated
domain_of:
- Agriculture
- FoodFarmEnvironment
- HostAssociated
- PlantAssociated
- SymbiontAssociated
range: integer
host_tot_mass:
name: host_tot_mass
description: placeholder description; linter will ignore this
title: host total mass
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000263
alias: host_tot_mass
owner: PlantAssociated
domain_of:
- Agriculture
- FoodFarmEnvironment
- HostAssociated
- HumanAssociated
- HumanGut
- HumanOral
- HumanSkin
- HumanVaginal
- PlantAssociated
- SymbiontAssociated
range: string
pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
structured_pattern:
syntax: '{float} {unit}'
host_wet_mass:
name: host_wet_mass
description: placeholder description; linter will ignore this
title: host wet mass
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000567
alias: host_wet_mass
owner: PlantAssociated
domain_of:
- PlantAssociated
range: string
pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
structured_pattern:
syntax: '{float} {unit}'
humidity_regm:
name: humidity_regm
description: placeholder description; linter will ignore this
title: humidity regimen
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000568
alias: humidity_regm
owner: PlantAssociated
domain_of:
- PlantAssociated
range: string
light_regm:
name: light_regm
description: placeholder description; linter will ignore this
title: light regimen
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000569
alias: light_regm
owner: PlantAssociated
domain_of:
- PlantAssociated
range: string
mechanical_damage:
name: mechanical_damage
description: placeholder description; linter will ignore this
title: mechanical damage
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0001052
alias: mechanical_damage
owner: PlantAssociated
domain_of:
- FoodFarmEnvironment
- PlantAssociated
range: string
mineral_nutr_regm:
name: mineral_nutr_regm
description: placeholder description; linter will ignore this
title: mineral nutrient regimen
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000570
alias: mineral_nutr_regm
owner: PlantAssociated
domain_of:
- PlantAssociated
range: string
pattern: '[^s\|][^\r\n\t\|]*;[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*;R[+-]?[1-9][0-9]*/\d{4}-\d\d-\d\d[Tt]\d\d:\d\d(:\d\d(\.\d+)?([Zz]|[\+\-]\d\d:\d\d)?)?/\d{4}-\d\d-\d\d[Tt]\d\d:\d\d(:\d\d(\.\d+)?([Zz]|[\+\-]\d\d:\d\d)?)?/P(?=\d+[YMWD])(\d+Y)?(\d+M)?(\d+W)?(\d+D)?(T(?=\d+[HMS])(\d+H)?(\d+M)?(\d+S)?)?'
structured_pattern:
syntax: '{free_text};{float} {unit};R{integer}/{start_time}/{end_time}/{period}'
misc_param:
name: misc_param
description: placeholder description; linter will ignore this
title: miscellaneous parameter
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000752
alias: misc_param
owner: PlantAssociated
domain_of:
- Agriculture
- Air
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
- HostAssociated
- HumanAssociated
- HumanGut
- HumanOral
- HumanSkin
- HumanVaginal
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- PlantAssociated
- Sediment
- Soil
- SymbiontAssociated
- WastewaterSludge
- Water
range: string
pattern: (([^s\|][^\r\n\t\|]*;[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*)\\|)*([^s\|][^\r\n\t\|]*;[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)?
[^s\|][^\r\n\t\|]*)
structured_pattern:
syntax: (({free_text};{float} {unit})\\|)*({free_text};{float} {unit})
non_mineral_nutr_regm:
name: non_mineral_nutr_regm
description: placeholder description; linter will ignore this
title: non-mineral nutrient regimen
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000571
alias: non_mineral_nutr_regm
owner: PlantAssociated
domain_of:
- Agriculture
- PlantAssociated
range: string
pattern: '[^s\|][^\r\n\t\|]*;[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*;R[+-]?[1-9][0-9]*/\d{4}-\d\d-\d\d[Tt]\d\d:\d\d(:\d\d(\.\d+)?([Zz]|[\+\-]\d\d:\d\d)?)?/\d{4}-\d\d-\d\d[Tt]\d\d:\d\d(:\d\d(\.\d+)?([Zz]|[\+\-]\d\d:\d\d)?)?/P(?=\d+[YMWD])(\d+Y)?(\d+M)?(\d+W)?(\d+D)?(T(?=\d+[HMS])(\d+H)?(\d+M)?(\d+S)?)?'
structured_pattern:
syntax: '{free_text};{float} {unit};R{integer}/{start_time}/{end_time}/{period}'
organism_count:
name: organism_count
description: placeholder description; linter will ignore this
title: organism count
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000103
alias: organism_count
owner: PlantAssociated
domain_of:
- Agriculture
- Air
- BuiltEnvironment
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
- HostAssociated
- HumanAssociated
- HumanGut
- HumanOral
- HumanSkin
- HumanVaginal
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- PlantAssociated
- Sediment
- SymbiontAssociated
- WastewaterSludge
- Water
range: string
oxy_stat_samp:
name: oxy_stat_samp
description: placeholder description; linter will ignore this
title: oxygenation status of sample
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000753
alias: oxy_stat_samp
owner: PlantAssociated
domain_of:
- Agriculture
- Air
- HostAssociated
- HumanAssociated
- HumanGut
- HumanOral
- HumanSkin
- HumanVaginal
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- PlantAssociated
- Sediment
- SymbiontAssociated
- WastewaterSludge
- Water
range: OXY_STAT_SAMP_ENUM
perturbation:
name: perturbation
description: placeholder description; linter will ignore this
title: perturbation
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000754
alias: perturbation
owner: PlantAssociated
domain_of:
- Agriculture
- Air
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodHumanFoods
- HostAssociated
- HumanAssociated
- HumanGut
- HumanOral
- HumanSkin
- HumanVaginal
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- PlantAssociated
- Sediment
- SymbiontAssociated
- WastewaterSludge
- Water
range: string
pesticide_regm:
name: pesticide_regm
description: placeholder description; linter will ignore this
title: pesticide regimen
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000573
alias: pesticide_regm
owner: PlantAssociated
domain_of:
- Agriculture
- PlantAssociated
range: string
pattern: '[^s\|][^\r\n\t\|]*;[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*;R[+-]?[1-9][0-9]*/\d{4}-\d\d-\d\d[Tt]\d\d:\d\d(:\d\d(\.\d+)?([Zz]|[\+\-]\d\d:\d\d)?)?/\d{4}-\d\d-\d\d[Tt]\d\d:\d\d(:\d\d(\.\d+)?([Zz]|[\+\-]\d\d:\d\d)?)?/P(?=\d+[YMWD])(\d+Y)?(\d+M)?(\d+W)?(\d+D)?(T(?=\d+[HMS])(\d+H)?(\d+M)?(\d+S)?)?'
structured_pattern:
syntax: '{free_text};{float} {unit};R{integer}/{start_time}/{end_time}/{period}'
ph_regm:
name: ph_regm
description: placeholder description; linter will ignore this
title: pH regimen
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0001056
alias: ph_regm
owner: PlantAssociated
domain_of:
- Agriculture
- PlantAssociated
range: string
plant_growth_med:
name: plant_growth_med
description: placeholder description; linter will ignore this
title: plant growth medium
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0001057
alias: plant_growth_med
owner: PlantAssociated
domain_of:
- Agriculture
- FoodFarmEnvironment
- PlantAssociated
range: string
plant_product:
name: plant_product
description: placeholder description; linter will ignore this
title: plant product
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0001058
alias: plant_product
owner: PlantAssociated
domain_of:
- Agriculture
- PlantAssociated
range: string
pattern: '[^s\|][^\r\n\t\|]*'
structured_pattern:
syntax: '{free_text}'
plant_sex:
name: plant_sex
description: placeholder description; linter will ignore this
title: plant sex
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0001059
alias: plant_sex
owner: PlantAssociated
domain_of:
- PlantAssociated
range: string
plant_struc:
name: plant_struc
description: placeholder description; linter will ignore this
title: plant structure
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0001060
alias: plant_struc
owner: PlantAssociated
domain_of:
- Agriculture
- PlantAssociated
range: string
pattern: '[^s\|][^\r\n\t\|]* [[a-zA-Z]+:[0-9]+]'
structured_pattern:
syntax: '{term_label} [{term_id}]'
radiation_regm:
name: radiation_regm
description: placeholder description; linter will ignore this
title: radiation regimen
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000575
alias: radiation_regm
owner: PlantAssociated
domain_of:
- PlantAssociated
range: string
pattern: '[^s\|][^\r\n\t\|]*;[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*;R[+-]?[1-9][0-9]*/\d{4}-\d\d-\d\d[Tt]\d\d:\d\d(:\d\d(\.\d+)?([Zz]|[\+\-]\d\d:\d\d)?)?/\d{4}-\d\d-\d\d[Tt]\d\d:\d\d(:\d\d(\.\d+)?([Zz]|[\+\-]\d\d:\d\d)?)?/P(?=\d+[YMWD])(\d+Y)?(\d+M)?(\d+W)?(\d+D)?(T(?=\d+[HMS])(\d+H)?(\d+M)?(\d+S)?)?'
structured_pattern:
syntax: '{free_text};{float} {unit};R{integer}/{start_time}/{end_time}/{period}'
rainfall_regm:
name: rainfall_regm
description: placeholder description; linter will ignore this
title: rainfall regimen
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000576
alias: rainfall_regm
owner: PlantAssociated
domain_of:
- PlantAssociated
range: string
root_cond:
name: root_cond
description: placeholder description; linter will ignore this
title: rooting conditions
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0001061
alias: root_cond
owner: PlantAssociated
domain_of:
- FoodFarmEnvironment
- PlantAssociated
range: string
pattern: (10.\d{4,9}/[-._;()/:a-zA-Z0-9]+)|(PMID:(\d{7,8}))|((?:https?://)?(?:www\.)?[\w-]+(?:\.[\w-]+)+[\w.,@?^=%&:/~+#-]*[\w@?^=%&/~+#-])|([^s\|][^\r\n\t\|]*)
structured_pattern:
syntax: ({DOI})|({PMID})|({URL})|({free_text})
root_med_carbon:
name: root_med_carbon
description: placeholder description; linter will ignore this
title: rooting medium carbon
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000577
alias: root_med_carbon
owner: PlantAssociated
domain_of:
- Agriculture
- FoodFarmEnvironment
- PlantAssociated
range: string
root_med_macronutr:
name: root_med_macronutr
description: placeholder description; linter will ignore this
title: rooting medium macronutrients
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000578
alias: root_med_macronutr
owner: PlantAssociated
domain_of:
- Agriculture
- FoodFarmEnvironment
- PlantAssociated
range: string
pattern: '[^s\|][^\r\n\t\|]*;[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
structured_pattern:
syntax: '{free_text};{float} {unit}'
root_med_micronutr:
name: root_med_micronutr
description: placeholder description; linter will ignore this
title: rooting medium micronutrients
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000579
alias: root_med_micronutr
owner: PlantAssociated
domain_of:
- FoodFarmEnvironment
- PlantAssociated
range: string
pattern: '[^s\|][^\r\n\t\|]*;[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
structured_pattern:
syntax: '{free_text};{float} {unit}'
root_med_ph:
name: root_med_ph
description: placeholder description; linter will ignore this
title: rooting medium pH
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0001062
alias: root_med_ph
owner: PlantAssociated
domain_of:
- Agriculture
- FoodFarmEnvironment
- PlantAssociated
range: float
root_med_regl:
name: root_med_regl
description: placeholder description; linter will ignore this
title: rooting medium regulators
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000581
alias: root_med_regl
owner: PlantAssociated
domain_of:
- PlantAssociated
range: string
pattern: '[^s\|][^\r\n\t\|]*;[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
structured_pattern:
syntax: '{free_text};{float} {unit}'
root_med_solid:
name: root_med_solid
description: placeholder description; linter will ignore this
title: rooting medium solidifier
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0001063
alias: root_med_solid
owner: PlantAssociated
domain_of:
- PlantAssociated
range: string
pattern: '[^s\|][^\r\n\t\|]*'
structured_pattern:
syntax: '{free_text}'
root_med_suppl:
name: root_med_suppl
description: placeholder description; linter will ignore this
title: rooting medium organic supplements
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000580
alias: root_med_suppl
owner: PlantAssociated
domain_of:
- PlantAssociated
range: string
pattern: '[^s\|][^\r\n\t\|]*;[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
structured_pattern:
syntax: '{free_text};{float} {unit}'
salinity:
name: salinity
description: placeholder description; linter will ignore this
title: salinity
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000183
alias: salinity
owner: PlantAssociated
domain_of:
- Air
- FoodFarmEnvironment
- HostAssociated
- HumanAssociated
- HumanGut
- HumanOral
- HumanSkin
- HumanVaginal
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- PlantAssociated
- Sediment
- WastewaterSludge
- Water
range: string
pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
structured_pattern:
syntax: '{float} {unit}'
salt_regm:
name: salt_regm
description: placeholder description; linter will ignore this
title: salt regimen
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000582
alias: salt_regm
owner: PlantAssociated
domain_of:
- Agriculture
- PlantAssociated
range: string
pattern: '[^s\|][^\r\n\t\|]*;[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*;R[+-]?[1-9][0-9]*/\d{4}-\d\d-\d\d[Tt]\d\d:\d\d(:\d\d(\.\d+)?([Zz]|[\+\-]\d\d:\d\d)?)?/\d{4}-\d\d-\d\d[Tt]\d\d:\d\d(:\d\d(\.\d+)?([Zz]|[\+\-]\d\d:\d\d)?)?/P(?=\d+[YMWD])(\d+Y)?(\d+M)?(\d+W)?(\d+D)?(T(?=\d+[HMS])(\d+H)?(\d+M)?(\d+S)?)?'
structured_pattern:
syntax: '{free_text};{float} {unit};R{integer}/{start_time}/{end_time}/{period}'
samp_capt_status:
name: samp_capt_status
description: placeholder description; linter will ignore this
title: sample capture status
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000860
alias: samp_capt_status
owner: PlantAssociated
domain_of:
- HostAssociated
- PlantAssociated
range: string
samp_dis_stage:
name: samp_dis_stage
description: placeholder description; linter will ignore this
title: sample disease stage
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000249
alias: samp_dis_stage
owner: PlantAssociated
domain_of:
- HostAssociated
- PlantAssociated
range: string
samp_store_dur:
name: samp_store_dur
description: placeholder description; linter will ignore this
title: sample storage duration
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000116
alias: samp_store_dur
owner: PlantAssociated
domain_of:
- Agriculture
- Air
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
- HostAssociated
- HumanAssociated
- HumanGut
- HumanOral
- HumanSkin
- HumanVaginal
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- PlantAssociated
- Sediment
- SymbiontAssociated
- WastewaterSludge
- Water
range: string
pattern: P(?=\d+[YMWD])(\d+Y)?(\d+M)?(\d+W)?(\d+D)?(T(?=\d+[HMS])(\d+H)?(\d+M)?(\d+S)?)?
structured_pattern:
syntax: '{period}'
samp_store_loc:
name: samp_store_loc
description: placeholder description; linter will ignore this
title: sample storage location
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000755
alias: samp_store_loc
owner: PlantAssociated
domain_of:
- Agriculture
- Air
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
- FoodHumanFoods
- HostAssociated
- HumanAssociated
- HumanGut
- HumanOral
- HumanSkin
- HumanVaginal
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- PlantAssociated
- Sediment
- SymbiontAssociated
- WastewaterSludge
- Water
range: string
pattern: '[^s\|][^\r\n\t\|]*'
structured_pattern:
syntax: '{free_text}'
samp_store_temp:
name: samp_store_temp
description: placeholder description; linter will ignore this
title: sample storage temperature
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000110
alias: samp_store_temp
owner: PlantAssociated
domain_of:
- Agriculture
- Air
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
- HostAssociated
- HumanAssociated
- HumanGut
- HumanOral
- HumanSkin
- HumanVaginal
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- PlantAssociated
- Sediment
- SymbiontAssociated
- WastewaterSludge
- Water
range: string
pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
structured_pattern:
syntax: '{float} {unit}'
samp_vol_we_dna_ext:
name: samp_vol_we_dna_ext
description: placeholder description; linter will ignore this
title: sample volume or weight for DNA extraction
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000111
alias: samp_vol_we_dna_ext
owner: PlantAssociated
domain_of:
- Agriculture
- Air
- Checklist
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
- HostAssociated
- HumanAssociated
- HumanGut
- HumanOral
- HumanSkin
- HumanVaginal
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- MicrobialMatBiofilm
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- MiscellaneousNaturalOrArtificialEnvironment
- Miuvig
- PlantAssociated
- Sediment
- Soil
- SymbiontAssociated
- WastewaterSludge
- Water
range: string
pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
structured_pattern:
syntax: '{float} {unit}'
season_environment:
name: season_environment
description: placeholder description; linter will ignore this
title: seasonal environment
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0001068
alias: season_environment
owner: PlantAssociated
domain_of:
- Agriculture
- PlantAssociated
range: string
standing_water_regm:
name: standing_water_regm
description: placeholder description; linter will ignore this
title: standing water regimen
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0001069
alias: standing_water_regm
owner: PlantAssociated
domain_of:
- Agriculture
- PlantAssociated
range: string
temp:
name: temp
description: placeholder description; linter will ignore this
title: temperature
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000113
alias: temp
owner: PlantAssociated
domain_of:
- Agriculture
- Air
- Checklist
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodHumanFoods
- HostAssociated
- HumanAssociated
- HumanGut
- HumanOral
- HumanSkin
- HumanVaginal
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- MicrobialMatBiofilm
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- MiscellaneousNaturalOrArtificialEnvironment
- Miuvig
- PlantAssociated
- Sediment
- Soil
- SymbiontAssociated
- WastewaterSludge
- Water
range: string
pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
structured_pattern:
syntax: '{float} {unit}'
tiss_cult_growth_med:
name: tiss_cult_growth_med
description: placeholder description; linter will ignore this
title: tissue culture growth media
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0001070
alias: tiss_cult_growth_med
owner: PlantAssociated
domain_of:
- PlantAssociated
range: string
pattern: (10.\d{4,9}/[-._;()/:a-zA-Z0-9]+)|(PMID:(\d{7,8}))|((?:https?://)?(?:www\.)?[\w-]+(?:\.[\w-]+)+[\w.,@?^=%&:/~+#-]*[\w@?^=%&/~+#-])|([^s\|][^\r\n\t\|]*)
structured_pattern:
syntax: ({DOI})|({PMID})|({URL})|({free_text})
water_temp_regm:
name: water_temp_regm
description: placeholder description; linter will ignore this
title: water temperature regimen
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000590
alias: water_temp_regm
owner: PlantAssociated
domain_of:
- Agriculture
- PlantAssociated
range: string
watering_regm:
name: watering_regm
description: placeholder description; linter will ignore this
title: watering regimen
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000591
alias: watering_regm
owner: PlantAssociated
domain_of:
- Agriculture
- PlantAssociated
range: string
project_name:
name: project_name
description: placeholder description; linter will ignore this
title: project name
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000092
alias: project_name
owner: PlantAssociated
domain_of:
- Air
- BuiltEnvironment
- Checklist
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
- HostAssociated
- HumanAssociated
- HumanGut
- HumanOral
- HumanSkin
- HumanVaginal
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- MicrobialMatBiofilm
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- MiscellaneousNaturalOrArtificialEnvironment
- Miuvig
- PlantAssociated
- Sediment
- Soil
- SymbiontAssociated
- WastewaterSludge
- Water
range: string
required: true
pattern: '[^s\|][^\r\n\t\|]*'
structured_pattern:
syntax: '{free_text}'
class_uri: MIXS:0016010