Class: MimsSoil

name: MimsSoil
description: placeholder description; linter will ignore this
title: soil sample according to the Mims checklist
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
is_a: Soil
mixins:
- Mims
class_uri: MIXS:0010007_0016012

name: MimsSoil
description: placeholder description; linter will ignore this
title: soil sample according to the Mims checklist
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
is_a: Soil
mixins:
- Mims
attributes:
  mid:
    name: mid
    description: placeholder description; linter will ignore this
    title: multiplex identifiers
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000047
    alias: mid
    owner: MimsSoil
    domain_of:
    - Agriculture
    - Checklist
    - Mimag
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    range: string
    recommended: true
    pattern: '[ACGT]+'
    structured_pattern:
      syntax: '{dna}'
  adapters:
    name: adapters
    description: placeholder description; linter will ignore this
    title: adapters
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000048
    alias: adapters
    owner: MimsSoil
    domain_of:
    - Agriculture
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    range: string
    recommended: true
    pattern: '[ACGT]+;[ACGT]+'
    structured_pattern:
      syntax: '{dna};{dna}'
  annot:
    name: annot
    description: placeholder description; linter will ignore this
    title: annotation
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000059
    alias: annot
    owner: MimsSoil
    domain_of:
    - Agriculture
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - Mims
    - Misag
    - Miuvig
    range: string
    recommended: true
    pattern: '[^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{free_text}'
  assembly_name:
    name: assembly_name
    description: placeholder description; linter will ignore this
    title: assembly name
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000057
    alias: assembly_name
    owner: MimsSoil
    domain_of:
    - Agriculture
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - Mims
    - Misag
    - Miuvig
    range: string
    recommended: true
    pattern: '[^s\|][^\r\n\t\|]* [^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{free_text} {free_text}'
  neg_cont_type:
    name: neg_cont_type
    description: placeholder description; linter will ignore this
    title: negative control type
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0001321
    alias: neg_cont_type
    owner: MimsSoil
    domain_of:
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    range: NEG_CONT_TYPE_ENUM
    recommended: true
  nucl_acid_amp:
    name: nucl_acid_amp
    description: placeholder description; linter will ignore this
    title: nucleic acid amplification
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000038
    alias: nucl_acid_amp
    owner: MimsSoil
    domain_of:
    - Agriculture
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    range: string
    recommended: true
    pattern: (10.\d{4,9}/[-._;()/:a-zA-Z0-9]+)|(PMID:(\d{7,8}))|((?:https?://)?(?:www\.)?[\w-]+(?:\.[\w-]+)+[\w.,@?^=%&:/~+#-]*[\w@?^=%&/~+#-])
    structured_pattern:
      syntax: ({DOI})|({PMID})|({URL})
  nucl_acid_ext:
    name: nucl_acid_ext
    description: placeholder description; linter will ignore this
    title: nucleic acid extraction
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000037
    alias: nucl_acid_ext
    owner: MimsSoil
    domain_of:
    - Agriculture
    - Checklist
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    range: string
    recommended: true
    pattern: (10.\d{4,9}/[-._;()/:a-zA-Z0-9]+)|(PMID:(\d{7,8}))|((?:https?://)?(?:www\.)?[\w-]+(?:\.[\w-]+)+[\w.,@?^=%&:/~+#-]*[\w@?^=%&/~+#-])
    structured_pattern:
      syntax: ({DOI})|({PMID})|({URL})
  pos_cont_type:
    name: pos_cont_type
    description: placeholder description; linter will ignore this
    title: positive control type
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0001322
    alias: pos_cont_type
    owner: MimsSoil
    domain_of:
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    range: string
    recommended: true
  sop:
    name: sop
    description: placeholder description; linter will ignore this
    title: relevant standard operating procedures
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000090
    alias: sop
    owner: MimsSoil
    domain_of:
    - Agriculture
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    range: string
    recommended: true
    pattern: (((10.\d{4,9}/[-._;()/:a-zA-Z0-9]+)|(PMID:(\d{7,8}))|((?:https?://)?(?:www\.)?[\w-]+(?:\.[\w-]+)+[\w.,@?^=%&:/~+#-]*[\w@?^=%&/~+#-]))\|)*(((10.\d{4,9}/[-._;()/:a-zA-Z0-9]+)|(PMID:(\d{7,8}))|((?:https?://)?(?:www\.)?[\w-]+(?:\.[\w-]+)+[\w.,@?^=%&:/~+#-]*[\w@?^=%&/~+#-])))
    structured_pattern:
      syntax: ((({DOI})|({PMID})|({URL}))\|)*((({DOI})|({PMID})|({URL})))
  source_mat_id:
    name: source_mat_id
    description: placeholder description; linter will ignore this
    title: source material identifiers
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000026
    alias: source_mat_id
    owner: MimsSoil
    domain_of:
    - Agriculture
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    - SymbiontAssociated
    range: string
    recommended: true
    pattern: '[^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{free_text}'
  assembly_qual:
    name: assembly_qual
    description: placeholder description; linter will ignore this
    title: assembly quality
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000056
    alias: assembly_qual
    owner: MimsSoil
    domain_of:
    - Agriculture
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - Mims
    - Misag
    - Miuvig
    range: ASSEMBLY_QUAL_ENUM
    recommended: true
  assembly_software:
    name: assembly_software
    description: placeholder description; linter will ignore this
    title: assembly software
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000058
    alias: assembly_software
    owner: MimsSoil
    domain_of:
    - Agriculture
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    range: string
    recommended: true
    pattern: '[^s\|][^\r\n\t\|]*;[^s\|][^\r\n\t\|]*;[^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{software};{version};{parameters}'
  number_contig:
    name: number_contig
    description: placeholder description; linter will ignore this
    title: number of contigs
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000060
    alias: number_contig
    owner: MimsSoil
    domain_of:
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - Mims
    - Misag
    - Miuvig
    range: integer
    recommended: true
  experimental_factor:
    name: experimental_factor
    description: placeholder description; linter will ignore this
    title: experimental factor
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000008
    alias: experimental_factor
    owner: MimsSoil
    domain_of:
    - Checklist
    - FoodAnimalAndAnimalFeed
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    range: string
    recommended: true
  lib_layout:
    name: lib_layout
    description: placeholder description; linter will ignore this
    title: library layout
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000041
    alias: lib_layout
    owner: MimsSoil
    domain_of:
    - Agriculture
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    range: LIB_LAYOUT_ENUM
    recommended: true
  lib_reads_seqd:
    name: lib_reads_seqd
    description: placeholder description; linter will ignore this
    title: library reads sequenced
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000040
    alias: lib_reads_seqd
    owner: MimsSoil
    domain_of:
    - Agriculture
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    range: integer
    recommended: true
  lib_screen:
    name: lib_screen
    description: placeholder description; linter will ignore this
    title: library screening strategy
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000043
    alias: lib_screen
    owner: MimsSoil
    domain_of:
    - Agriculture
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    range: string
    recommended: true
    pattern: '[^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{free_text}'
  lib_size:
    name: lib_size
    description: placeholder description; linter will ignore this
    title: library size
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000039
    alias: lib_size
    owner: MimsSoil
    domain_of:
    - Agriculture
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    range: integer
    recommended: true
  lib_vector:
    name: lib_vector
    description: placeholder description; linter will ignore this
    title: library vector
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000042
    alias: lib_vector
    owner: MimsSoil
    domain_of:
    - Agriculture
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    range: string
    recommended: true
    pattern: '[^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{free_text}'
  samp_mat_process:
    name: samp_mat_process
    description: placeholder description; linter will ignore this
    title: sample material processing
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000016
    alias: samp_mat_process
    owner: MimsSoil
    domain_of:
    - Agriculture
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    range: string
    recommended: true
    pattern: '[^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{free_text}'
  samp_size:
    name: samp_size
    description: placeholder description; linter will ignore this
    title: amount or size of sample collected
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000001
    alias: samp_size
    owner: MimsSoil
    domain_of:
    - Agriculture
    - Checklist
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    range: string
    recommended: true
    pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{float} {unit}'
  alt:
    name: alt
    description: placeholder description; linter will ignore this
    title: altitude
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000094
    alias: alt
    owner: MimsSoil
    domain_of:
    - Air
    - Checklist
    - HostAssociated
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - MiscellaneousNaturalOrArtificialEnvironment
    - Miuvig
    - SymbiontAssociated
    range: string
    recommended: true
    pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{float} {unit}'
  elev:
    name: elev
    description: placeholder description; linter will ignore this
    title: elevation
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000093
    alias: elev
    owner: MimsSoil
    domain_of:
    - Agriculture
    - Air
    - Checklist
    - HostAssociated
    - HydrocarbonResourcesCores
    - MicrobialMatBiofilm
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - MiscellaneousNaturalOrArtificialEnvironment
    - Miuvig
    - PlantAssociated
    - Sediment
    - Soil
    - SymbiontAssociated
    - Water
    range: string
    required: true
    recommended: true
    pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{float} {unit}'
  temp:
    name: temp
    description: placeholder description; linter will ignore this
    title: temperature
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000113
    alias: temp
    owner: MimsSoil
    domain_of:
    - Agriculture
    - Air
    - Checklist
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodHumanFoods
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - MiscellaneousNaturalOrArtificialEnvironment
    - Miuvig
    - PlantAssociated
    - Sediment
    - Soil
    - SymbiontAssociated
    - WastewaterSludge
    - Water
    range: string
    recommended: true
    pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{float} {unit}'
  rel_to_oxygen:
    name: rel_to_oxygen
    description: placeholder description; linter will ignore this
    title: relationship to oxygen
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000015
    alias: rel_to_oxygen
    owner: MimsSoil
    domain_of:
    - Checklist
    - MigsBa
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    range: string
  size_frac:
    name: size_frac
    description: placeholder description; linter will ignore this
    title: size fraction selected
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000017
    alias: size_frac
    owner: MimsSoil
    domain_of:
    - Checklist
    - Mimag
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    range: string
    pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)?-[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)?
      [^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{float}-{float} {unit}'
  feat_pred:
    name: feat_pred
    description: placeholder description; linter will ignore this
    title: feature prediction
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000061
    alias: feat_pred
    owner: MimsSoil
    domain_of:
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - Mims
    - Misag
    - Miuvig
    range: string
    pattern: '[^s\|][^\r\n\t\|]*;[^s\|][^\r\n\t\|]*;[^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{software};{version};{parameters}'
  ref_biomaterial:
    name: ref_biomaterial
    description: placeholder description; linter will ignore this
    title: reference for biomaterial
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000025
    alias: ref_biomaterial
    owner: MimsSoil
    domain_of:
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - Mims
    - Misag
    - Miuvig
    range: string
    pattern: (10.\d{4,9}/[-._;()/:a-zA-Z0-9]+)|(PMID:(\d{7,8}))|((?:https?://)?(?:www\.)?[\w-]+(?:\.[\w-]+)+[\w.,@?^=%&:/~+#-]*[\w@?^=%&/~+#-])
    structured_pattern:
      syntax: ({DOI})|({PMID})|({URL})
  ref_db:
    name: ref_db
    description: placeholder description; linter will ignore this
    title: reference database(s)
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000062
    alias: ref_db
    owner: MimsSoil
    domain_of:
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - Mims
    - Misag
    - Miuvig
    range: string
    pattern: '[^s\|][^\r\n\t\|]+;[^s\|][^\r\n\t\|]*;[^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{database};{version};{reference}'
  samp_vol_we_dna_ext:
    name: samp_vol_we_dna_ext
    description: placeholder description; linter will ignore this
    title: sample volume or weight for DNA extraction
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000111
    alias: samp_vol_we_dna_ext
    owner: MimsSoil
    domain_of:
    - Agriculture
    - Air
    - Checklist
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - MiscellaneousNaturalOrArtificialEnvironment
    - Miuvig
    - PlantAssociated
    - Sediment
    - Soil
    - SymbiontAssociated
    - WastewaterSludge
    - Water
    range: string
    pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{float} {unit}'
  sim_search_meth:
    name: sim_search_meth
    description: placeholder description; linter will ignore this
    title: similarity search method
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000063
    alias: sim_search_meth
    owner: MimsSoil
    domain_of:
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - Mims
    - Misag
    - Miuvig
    range: string
    pattern: '[^s\|][^\r\n\t\|]*;[^s\|][^\r\n\t\|]*;[^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{software};{version};{parameters}'
  tax_class:
    name: tax_class
    description: placeholder description; linter will ignore this
    title: taxonomic classification
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000064
    alias: tax_class
    owner: MimsSoil
    domain_of:
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - Mims
    - Misag
    - Miuvig
    range: string
    pattern: '[^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{free_text}'
  collection_date:
    name: collection_date
    description: placeholder description; linter will ignore this
    title: collection date
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000011
    alias: collection_date
    owner: MimsSoil
    domain_of:
    - Checklist
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    - SymbiontAssociated
    range: string
    required: true
  env_broad_scale:
    name: env_broad_scale
    description: placeholder description; linter will ignore this
    title: broad-scale environmental context
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000012
    alias: env_broad_scale
    owner: MimsSoil
    domain_of:
    - Checklist
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    - SymbiontAssociated
    range: string
    required: true
    pattern: '[^s\|][^\r\n\t\|]* [[a-zA-Z]+:[0-9]+]'
    structured_pattern:
      syntax: '{term_label} [{term_id}]'
  env_local_scale:
    name: env_local_scale
    description: placeholder description; linter will ignore this
    title: local environmental context
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000013
    alias: env_local_scale
    owner: MimsSoil
    domain_of:
    - Checklist
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    - SymbiontAssociated
    range: string
    required: true
    pattern: '[^s\|][^\r\n\t\|]* [[a-zA-Z]+:[0-9]+]'
    structured_pattern:
      syntax: '{term_label} [{term_id}]'
  env_medium:
    name: env_medium
    description: placeholder description; linter will ignore this
    title: environmental medium
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000014
    alias: env_medium
    owner: MimsSoil
    domain_of:
    - Checklist
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    - SymbiontAssociated
    range: string
    required: true
    pattern: '[^s\|][^\r\n\t\|]* [[a-zA-Z]+:[0-9]+]'
    structured_pattern:
      syntax: '{term_label} [{term_id}]'
  geo_loc_name:
    name: geo_loc_name
    description: placeholder description; linter will ignore this
    title: geographic location (country and/or sea,region)
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000010
    alias: geo_loc_name
    owner: MimsSoil
    domain_of:
    - Checklist
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    - SymbiontAssociated
    range: string
    required: true
    pattern: '[^s\|][^\r\n\t\|]*: [^s\|][^\r\n\t\|]*, [^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{term}: {term}, {free_text}'
  lat_lon:
    name: lat_lon
    description: placeholder description; linter will ignore this
    title: geographic location (latitude and longitude)
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000009
    alias: lat_lon
    owner: MimsSoil
    domain_of:
    - Checklist
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    - SymbiontAssociated
    range: string
    required: true
    pattern: '[-+]?([1-8]?\d(\.\d+)?|90(\.0+)?) [-+]?(180(\.0+)?|((1[0-7]\d)|([1-9]?\d))(\.\d+)?)'
    structured_pattern:
      syntax: '{lat} {lon}'
  project_name:
    name: project_name
    description: placeholder description; linter will ignore this
    title: project name
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000092
    alias: project_name
    owner: MimsSoil
    domain_of:
    - Air
    - BuiltEnvironment
    - Checklist
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - MiscellaneousNaturalOrArtificialEnvironment
    - Miuvig
    - PlantAssociated
    - Sediment
    - Soil
    - SymbiontAssociated
    - WastewaterSludge
    - Water
    range: string
    required: true
    pattern: '[^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{free_text}'
  samp_taxon_id:
    name: samp_taxon_id
    description: placeholder description; linter will ignore this
    title: taxonomy ID of DNA sample
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0001320
    alias: samp_taxon_id
    owner: MimsSoil
    domain_of:
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    range: string
    required: true
    pattern: '[^s\|][^\r\n\t\|]* [NCBITaxon:[0-9]+]'
    structured_pattern:
      syntax: '{term_label} [{ncbi_term_id}]'
  seq_meth:
    name: seq_meth
    description: placeholder description; linter will ignore this
    title: sequencing method
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000050
    alias: seq_meth
    owner: MimsSoil
    domain_of:
    - Agriculture
    - Checklist
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    range: string
    required: true
  agrochem_addition:
    name: agrochem_addition
    description: placeholder description; linter will ignore this
    title: history/agrochemical additions
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000639
    alias: agrochem_addition
    owner: MimsSoil
    domain_of:
    - Agriculture
    - Soil
    range: string
  al_sat:
    name: al_sat
    description: placeholder description; linter will ignore this
    title: extreme_unusual_properties/Al saturation
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000607
    alias: al_sat
    owner: MimsSoil
    domain_of:
    - Soil
    range: string
    pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{float} {unit}'
  al_sat_meth:
    name: al_sat_meth
    description: placeholder description; linter will ignore this
    title: extreme_unusual_properties/Al saturation method
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000324
    alias: al_sat_meth
    owner: MimsSoil
    domain_of:
    - Soil
    range: string
    pattern: (10.\d{4,9}/[-._;()/:a-zA-Z0-9]+)|(PMID:(\d{7,8}))|((?:https?://)?(?:www\.)?[\w-]+(?:\.[\w-]+)+[\w.,@?^=%&:/~+#-]*[\w@?^=%&/~+#-])
    structured_pattern:
      syntax: ({DOI})|({PMID})|({URL})
  annual_precpt:
    name: annual_precpt
    description: placeholder description; linter will ignore this
    title: mean annual precipitation
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000644
    alias: annual_precpt
    owner: MimsSoil
    domain_of:
    - Agriculture
    - Soil
    range: string
    pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{float} {unit}'
  annual_temp:
    name: annual_temp
    description: placeholder description; linter will ignore this
    title: mean annual temperature
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000642
    alias: annual_temp
    owner: MimsSoil
    domain_of:
    - Agriculture
    - Soil
    range: string
    pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{float} {unit}'
  crop_rotation:
    name: crop_rotation
    description: placeholder description; linter will ignore this
    title: history/crop rotation
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000318
    alias: crop_rotation
    owner: MimsSoil
    domain_of:
    - Agriculture
    - FoodFarmEnvironment
    - Soil
    range: string
  cur_land_use:
    name: cur_land_use
    description: placeholder description; linter will ignore this
    title: current land use
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0001080
    alias: cur_land_use
    owner: MimsSoil
    domain_of:
    - Agriculture
    - Soil
    range: CUR_LAND_USE_ENUM
  cur_vegetation:
    name: cur_vegetation
    description: placeholder description; linter will ignore this
    title: current vegetation
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000312
    alias: cur_vegetation
    owner: MimsSoil
    domain_of:
    - Agriculture
    - Soil
    range: string
    pattern: '[^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{free_text}'
  cur_vegetation_meth:
    name: cur_vegetation_meth
    description: placeholder description; linter will ignore this
    title: current vegetation method
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000314
    alias: cur_vegetation_meth
    owner: MimsSoil
    domain_of:
    - Agriculture
    - Soil
    range: string
    pattern: (10.\d{4,9}/[-._;()/:a-zA-Z0-9]+)|(PMID:(\d{7,8}))|((?:https?://)?(?:www\.)?[\w-]+(?:\.[\w-]+)+[\w.,@?^=%&:/~+#-]*[\w@?^=%&/~+#-])
    structured_pattern:
      syntax: ({DOI})|({PMID})|({URL})
  drainage_class:
    name: drainage_class
    description: placeholder description; linter will ignore this
    title: drainage classification
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0001085
    alias: drainage_class
    owner: MimsSoil
    domain_of:
    - Agriculture
    - Soil
    range: DRAINAGE_CLASS_ENUM
  extreme_event:
    name: extreme_event
    description: placeholder description; linter will ignore this
    title: history/extreme events
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000320
    alias: extreme_event
    owner: MimsSoil
    domain_of:
    - Agriculture
    - Soil
    range: string
  fao_class:
    name: fao_class
    description: placeholder description; linter will ignore this
    title: soil_taxonomic/FAO classification
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0001083
    alias: fao_class
    owner: MimsSoil
    domain_of:
    - Agriculture
    - Soil
    range: FAO_CLASS_ENUM
  fire:
    name: fire
    description: placeholder description; linter will ignore this
    title: history/fire
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0001086
    alias: fire
    owner: MimsSoil
    domain_of:
    - Agriculture
    - Soil
    range: string
  flooding:
    name: flooding
    description: placeholder description; linter will ignore this
    title: history/flooding
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000319
    alias: flooding
    owner: MimsSoil
    domain_of:
    - Agriculture
    - Soil
    range: string
  heavy_metals:
    name: heavy_metals
    description: placeholder description; linter will ignore this
    title: extreme_unusual_properties/heavy metals
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000652
    alias: heavy_metals
    owner: MimsSoil
    domain_of:
    - Soil
    range: string
    pattern: (([^s\|][^\r\n\t\|]*;[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*)\\|)*([^s\|][^\r\n\t\|]*;[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)?
      [^s\|][^\r\n\t\|]*)
    structured_pattern:
      syntax: (({free_text};{float} {unit})\\|)*({free_text};{float} {unit})
  heavy_metals_meth:
    name: heavy_metals_meth
    description: placeholder description; linter will ignore this
    title: extreme_unusual_properties/heavy metals method
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000343
    alias: heavy_metals_meth
    owner: MimsSoil
    domain_of:
    - Agriculture
    - Soil
    range: string
    pattern: (10.\d{4,9}/[-._;()/:a-zA-Z0-9]+)|(PMID:(\d{7,8}))|((?:https?://)?(?:www\.)?[\w-]+(?:\.[\w-]+)+[\w.,@?^=%&:/~+#-]*[\w@?^=%&/~+#-])
    structured_pattern:
      syntax: ({DOI})|({PMID})|({URL})
  horizon_meth:
    name: horizon_meth
    description: placeholder description; linter will ignore this
    title: horizon method
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000321
    alias: horizon_meth
    owner: MimsSoil
    domain_of:
    - Agriculture
    - Soil
    range: string
    pattern: (10.\d{4,9}/[-._;()/:a-zA-Z0-9]+)|(PMID:(\d{7,8}))|((?:https?://)?(?:www\.)?[\w-]+(?:\.[\w-]+)+[\w.,@?^=%&:/~+#-]*[\w@?^=%&/~+#-])
    structured_pattern:
      syntax: ({DOI})|({PMID})|({URL})
  link_addit_analys:
    name: link_addit_analys
    description: placeholder description; linter will ignore this
    title: links to additional analysis
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000340
    alias: link_addit_analys
    owner: MimsSoil
    domain_of:
    - Soil
    range: string
    pattern: (10.\d{4,9}/[-._;()/:a-zA-Z0-9]+)|(PMID:(\d{7,8}))|((?:https?://)?(?:www\.)?[\w-]+(?:\.[\w-]+)+[\w.,@?^=%&:/~+#-]*[\w@?^=%&/~+#-])
    structured_pattern:
      syntax: ({DOI})|({PMID})|({URL})
  link_class_info:
    name: link_class_info
    description: placeholder description; linter will ignore this
    title: link to classification information
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000329
    alias: link_class_info
    owner: MimsSoil
    domain_of:
    - Agriculture
    - Soil
    range: string
    pattern: (10.\d{4,9}/[-._;()/:a-zA-Z0-9]+)|(PMID:(\d{7,8}))|((?:https?://)?(?:www\.)?[\w-]+(?:\.[\w-]+)+[\w.,@?^=%&:/~+#-]*[\w@?^=%&/~+#-])
    structured_pattern:
      syntax: ({DOI})|({PMID})|({URL})
  link_climate_info:
    name: link_climate_info
    description: placeholder description; linter will ignore this
    title: link to climate information
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000328
    alias: link_climate_info
    owner: MimsSoil
    domain_of:
    - Agriculture
    - Soil
    range: string
    pattern: (10.\d{4,9}/[-._;()/:a-zA-Z0-9]+)|(PMID:(\d{7,8}))|((?:https?://)?(?:www\.)?[\w-]+(?:\.[\w-]+)+[\w.,@?^=%&:/~+#-]*[\w@?^=%&/~+#-])
    structured_pattern:
      syntax: ({DOI})|({PMID})|({URL})
  local_class:
    name: local_class
    description: placeholder description; linter will ignore this
    title: soil_taxonomic/local classification
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000330
    alias: local_class
    owner: MimsSoil
    domain_of:
    - Agriculture
    - Soil
    range: string
    pattern: '[^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{free_text}'
  local_class_meth:
    name: local_class_meth
    description: placeholder description; linter will ignore this
    title: soil_taxonomic/local classification method
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000331
    alias: local_class_meth
    owner: MimsSoil
    domain_of:
    - Agriculture
    - Soil
    range: string
    pattern: (10.\d{4,9}/[-._;()/:a-zA-Z0-9]+)|(PMID:(\d{7,8}))|((?:https?://)?(?:www\.)?[\w-]+(?:\.[\w-]+)+[\w.,@?^=%&:/~+#-]*[\w@?^=%&/~+#-])
    structured_pattern:
      syntax: ({DOI})|({PMID})|({URL})
  microbial_biomass:
    name: microbial_biomass
    description: placeholder description; linter will ignore this
    title: microbial biomass
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000650
    alias: microbial_biomass
    owner: MimsSoil
    domain_of:
    - Agriculture
    - Soil
    range: string
    pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{float} {unit}'
  misc_param:
    name: misc_param
    description: placeholder description; linter will ignore this
    title: miscellaneous parameter
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000752
    alias: misc_param
    owner: MimsSoil
    domain_of:
    - Agriculture
    - Air
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - PlantAssociated
    - Sediment
    - Soil
    - SymbiontAssociated
    - WastewaterSludge
    - Water
    range: string
    pattern: (([^s\|][^\r\n\t\|]*;[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*)\\|)*([^s\|][^\r\n\t\|]*;[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)?
      [^s\|][^\r\n\t\|]*)
    structured_pattern:
      syntax: (({free_text};{float} {unit})\\|)*({free_text};{float} {unit})
  org_matter:
    name: org_matter
    description: placeholder description; linter will ignore this
    title: organic matter
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000204
    alias: org_matter
    owner: MimsSoil
    domain_of:
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - Sediment
    - Soil
    - Water
    range: string
    pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{float} {unit}'
  org_nitro:
    name: org_nitro
    description: placeholder description; linter will ignore this
    title: organic nitrogen
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000205
    alias: org_nitro
    owner: MimsSoil
    domain_of:
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - Sediment
    - Soil
    - Water
    range: string
    pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{float} {unit}'
  ph:
    name: ph
    description: placeholder description; linter will ignore this
    title: pH
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0001001
    alias: ph
    owner: MimsSoil
    domain_of:
    - FoodFarmEnvironment
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - Sediment
    - Soil
    - WastewaterSludge
    - Water
    range: float
  ph_meth:
    name: ph_meth
    description: placeholder description; linter will ignore this
    title: pH method
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0001106
    alias: ph_meth
    owner: MimsSoil
    domain_of:
    - Agriculture
    - FoodFarmEnvironment
    - Soil
    range: string
    pattern: (10.\d{4,9}/[-._;()/:a-zA-Z0-9]+)|(PMID:(\d{7,8}))|((?:https?://)?(?:www\.)?[\w-]+(?:\.[\w-]+)+[\w.,@?^=%&:/~+#-]*[\w@?^=%&/~+#-])
    structured_pattern:
      syntax: ({DOI})|({PMID})|({URL})
  pool_dna_extracts:
    name: pool_dna_extracts
    description: placeholder description; linter will ignore this
    title: pooling of DNA extracts (if done)
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000325
    alias: pool_dna_extracts
    owner: MimsSoil
    domain_of:
    - Agriculture
    - FoodAnimalAndAnimalFeed
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - Soil
    range: string
  previous_land_use:
    name: previous_land_use
    description: placeholder description; linter will ignore this
    title: history/previous land use
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000315
    alias: previous_land_use
    owner: MimsSoil
    domain_of:
    - Agriculture
    - FoodFarmEnvironment
    - Soil
    range: string
  previous_land_use_meth:
    name: previous_land_use_meth
    description: placeholder description; linter will ignore this
    title: history/previous land use method
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000316
    alias: previous_land_use_meth
    owner: MimsSoil
    domain_of:
    - Agriculture
    - Soil
    range: string
    pattern: (10.\d{4,9}/[-._;()/:a-zA-Z0-9]+)|(PMID:(\d{7,8}))|((?:https?://)?(?:www\.)?[\w-]+(?:\.[\w-]+)+[\w.,@?^=%&:/~+#-]*[\w@?^=%&/~+#-])
    structured_pattern:
      syntax: ({DOI})|({PMID})|({URL})
  profile_position:
    name: profile_position
    description: placeholder description; linter will ignore this
    title: profile position
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0001084
    alias: profile_position
    owner: MimsSoil
    domain_of:
    - Agriculture
    - Soil
    range: PROFILE_POSITION_ENUM
  salinity_meth:
    name: salinity_meth
    description: placeholder description; linter will ignore this
    title: salinity method
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000341
    alias: salinity_meth
    owner: MimsSoil
    domain_of:
    - FoodFarmEnvironment
    - Soil
    range: string
    pattern: (10.\d{4,9}/[-._;()/:a-zA-Z0-9]+)|(PMID:(\d{7,8}))|((?:https?://)?(?:www\.)?[\w-]+(?:\.[\w-]+)+[\w.,@?^=%&:/~+#-]*[\w@?^=%&/~+#-])
    structured_pattern:
      syntax: ({DOI})|({PMID})|({URL})
  season_precpt:
    name: season_precpt
    description: placeholder description; linter will ignore this
    title: mean seasonal precipitation
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000645
    alias: season_precpt
    owner: MimsSoil
    domain_of:
    - Agriculture
    - FoodFarmEnvironment
    - Soil
    range: string
    pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{float} {unit}'
  season_temp:
    name: season_temp
    description: placeholder description; linter will ignore this
    title: mean seasonal temperature
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000643
    alias: season_temp
    owner: MimsSoil
    domain_of:
    - Agriculture
    - FoodFarmEnvironment
    - Soil
    range: string
    pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{float} {unit}'
  sieving:
    name: sieving
    description: placeholder description; linter will ignore this
    title: composite design/sieving
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000322
    alias: sieving
    owner: MimsSoil
    domain_of:
    - Agriculture
    - Soil
    range: string
  slope_aspect:
    name: slope_aspect
    description: placeholder description; linter will ignore this
    title: slope aspect
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000647
    alias: slope_aspect
    owner: MimsSoil
    domain_of:
    - Agriculture
    - Soil
    range: string
    pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{float} {unit}'
  slope_gradient:
    name: slope_gradient
    description: placeholder description; linter will ignore this
    title: slope gradient
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000646
    alias: slope_gradient
    owner: MimsSoil
    domain_of:
    - Agriculture
    - Soil
    range: string
    pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{float} {unit}'
  soil_type:
    name: soil_type
    description: placeholder description; linter will ignore this
    title: soil type
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000332
    alias: soil_type
    owner: MimsSoil
    domain_of:
    - Agriculture
    - FoodFarmEnvironment
    - Soil
    range: string
    pattern: '[^s\|][^\r\n\t\|]* [[a-zA-Z]+:[0-9]+]'
    structured_pattern:
      syntax: '{term_label} [{term_id}]'
  soil_type_meth:
    name: soil_type_meth
    description: placeholder description; linter will ignore this
    title: soil type method
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000334
    alias: soil_type_meth
    owner: MimsSoil
    domain_of:
    - Agriculture
    - FoodFarmEnvironment
    - Soil
    range: string
    pattern: (10.\d{4,9}/[-._;()/:a-zA-Z0-9]+)|(PMID:(\d{7,8}))|((?:https?://)?(?:www\.)?[\w-]+(?:\.[\w-]+)+[\w.,@?^=%&:/~+#-]*[\w@?^=%&/~+#-])
    structured_pattern:
      syntax: ({DOI})|({PMID})|({URL})
  store_cond:
    name: store_cond
    description: placeholder description; linter will ignore this
    title: storage conditions
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000327
    alias: store_cond
    owner: MimsSoil
    domain_of:
    - Agriculture
    - Soil
    range: string
    pattern: '[^s\|][^\r\n\t\|]*;P(?=\d+[YMWD])(\d+Y)?(\d+M)?(\d+W)?(\d+D)?(T(?=\d+[HMS])(\d+H)?(\d+M)?(\d+S)?)?'
    structured_pattern:
      syntax: '{free_text};{period}'
  tillage:
    name: tillage
    description: placeholder description; linter will ignore this
    title: history/tillage
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0001081
    multivalued: true
    alias: tillage
    owner: MimsSoil
    domain_of:
    - Agriculture
    - FoodFarmEnvironment
    - Soil
    range: TILLAGE_ENUM
  tot_org_c_meth:
    name: tot_org_c_meth
    description: placeholder description; linter will ignore this
    title: total organic carbon method
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000337
    alias: tot_org_c_meth
    owner: MimsSoil
    domain_of:
    - Agriculture
    - FoodFarmEnvironment
    - Soil
    range: string
    pattern: (10.\d{4,9}/[-._;()/:a-zA-Z0-9]+)|(PMID:(\d{7,8}))|((?:https?://)?(?:www\.)?[\w-]+(?:\.[\w-]+)+[\w.,@?^=%&:/~+#-]*[\w@?^=%&/~+#-])
    structured_pattern:
      syntax: ({DOI})|({PMID})|({URL})
  tot_org_carb:
    name: tot_org_carb
    description: placeholder description; linter will ignore this
    title: total organic carbon
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000533
    alias: tot_org_carb
    owner: MimsSoil
    domain_of:
    - Agriculture
    - FoodFarmEnvironment
    - MicrobialMatBiofilm
    - Sediment
    - Soil
    range: string
  water_cont_soil_meth:
    name: water_cont_soil_meth
    description: placeholder description; linter will ignore this
    title: water content method
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000323
    alias: water_cont_soil_meth
    owner: MimsSoil
    domain_of:
    - Soil
    range: string
    pattern: (10.\d{4,9}/[-._;()/:a-zA-Z0-9]+)|(PMID:(\d{7,8}))|((?:https?://)?(?:www\.)?[\w-]+(?:\.[\w-]+)+[\w.,@?^=%&:/~+#-]*[\w@?^=%&/~+#-])
    structured_pattern:
      syntax: ({DOI})|({PMID})|({URL})
  water_content:
    name: water_content
    description: placeholder description; linter will ignore this
    title: water content
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000185
    alias: water_content
    owner: MimsSoil
    domain_of:
    - MicrobialMatBiofilm
    - Sediment
    - Soil
    range: string
    pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{float} {unit}'
  bin_param:
    name: bin_param
    description: placeholder description; linter will ignore this
    title: binning parameters
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000077
    alias: bin_param
    owner: MimsSoil
    domain_of:
    - Checklist
    - Mimag
    - Miuvig
    range: string
  bin_software:
    name: bin_software
    description: placeholder description; linter will ignore this
    title: binning software
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000078
    alias: bin_software
    owner: MimsSoil
    domain_of:
    - Checklist
    - Mimag
    - Miuvig
    range: string
  biotic_relationship:
    name: biotic_relationship
    description: placeholder description; linter will ignore this
    title: observed biotic relationship
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000028
    alias: biotic_relationship
    owner: MimsSoil
    domain_of:
    - Agriculture
    - Checklist
    - MigsBa
    - MigsEu
    - MigsVi
    - MimarksC
    - Miuvig
    range: BIOTIC_RELATIONSHIP_ENUM
  chimera_check:
    name: chimera_check
    description: placeholder description; linter will ignore this
    title: chimera check software
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000052
    alias: chimera_check
    owner: MimsSoil
    domain_of:
    - Agriculture
    - Checklist
    - MimarksC
    - MimarksS
    range: string
  compl_appr:
    name: compl_appr
    description: placeholder description; linter will ignore this
    title: completeness approach
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000071
    alias: compl_appr
    owner: MimsSoil
    domain_of:
    - Checklist
    - Mimag
    - Misag
    - Miuvig
    range: string
  compl_score:
    name: compl_score
    description: placeholder description; linter will ignore this
    title: completeness score
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000069
    alias: compl_score
    owner: MimsSoil
    domain_of:
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - Misag
    - Miuvig
    range: string
  compl_software:
    name: compl_software
    description: placeholder description; linter will ignore this
    title: completeness software
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000070
    alias: compl_software
    owner: MimsSoil
    domain_of:
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - Misag
    - Miuvig
    range: string
    pattern: '[^s\|][^\r\n\t\|]*;[^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{software};{version}'
  contam_score:
    name: contam_score
    description: placeholder description; linter will ignore this
    title: contamination score
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000072
    alias: contam_score
    owner: MimsSoil
    domain_of:
    - Checklist
    - Mimag
    - Misag
    range: string
  contam_screen_input:
    name: contam_screen_input
    description: placeholder description; linter will ignore this
    title: contamination screening input
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000005
    alias: contam_screen_input
    owner: MimsSoil
    domain_of:
    - Checklist
    - Mimag
    - Misag
    range: string
  contam_screen_param:
    name: contam_screen_param
    description: placeholder description; linter will ignore this
    title: contamination screening parameters
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000073
    alias: contam_screen_param
    owner: MimsSoil
    domain_of:
    - Checklist
    - Mimag
    - Misag
    range: string
  decontam_software:
    name: decontam_software
    description: placeholder description; linter will ignore this
    title: decontamination software
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000074
    alias: decontam_software
    owner: MimsSoil
    domain_of:
    - Checklist
    - Mimag
    - Misag
    range: string
  detec_type:
    name: detec_type
    description: placeholder description; linter will ignore this
    title: detection type
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000084
    alias: detec_type
    owner: MimsSoil
    domain_of:
    - Checklist
    - Miuvig
    range: string
  encoded_traits:
    name: encoded_traits
    description: placeholder description; linter will ignore this
    title: encoded traits
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000034
    alias: encoded_traits
    owner: MimsSoil
    domain_of:
    - Checklist
    - MigsBa
    - MigsPl
    - MigsVi
    range: string
    pattern: '[^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{free_text}'
  estimated_size:
    name: estimated_size
    description: placeholder description; linter will ignore this
    title: estimated size
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000024
    alias: estimated_size
    owner: MimsSoil
    domain_of:
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Miuvig
    range: string
    pattern: '[+-]?[1-9][0-9]* bp'
    structured_pattern:
      syntax: '{integer} bp'
  extrachrom_elements:
    name: extrachrom_elements
    description: placeholder description; linter will ignore this
    title: extrachromosomal elements
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000023
    alias: extrachrom_elements
    owner: MimsSoil
    domain_of:
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MimarksC
    range: integer
  host_disease_stat:
    name: host_disease_stat
    description: placeholder description; linter will ignore this
    title: host disease status
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000031
    alias: host_disease_stat
    owner: MimsSoil
    domain_of:
    - Agriculture
    - Checklist
    - FoodFarmEnvironment
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - MigsBa
    - MigsEu
    - MigsVi
    - Miuvig
    - PlantAssociated
    range: string
    pattern: ((([^s\|][^\r\n\t\|]* [[a-zA-Z]+:[0-9]+])|[^s\|][^\r\n\t\|]*)\|)*(([^s\|][^\r\n\t\|]*
      [[a-zA-Z]+:[0-9]+])|[^s\|][^\r\n\t\|]*)
    structured_pattern:
      syntax: ((({term_label} [{term_id}])|{free_text})\|)*(({term_label} [{term_id}])|{free_text})
  host_pred_appr:
    name: host_pred_appr
    description: placeholder description; linter will ignore this
    title: host prediction approach
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000088
    alias: host_pred_appr
    owner: MimsSoil
    domain_of:
    - Checklist
    - Miuvig
    range: string
  host_pred_est_acc:
    name: host_pred_est_acc
    description: placeholder description; linter will ignore this
    title: host prediction estimated accuracy
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000089
    alias: host_pred_est_acc
    owner: MimsSoil
    domain_of:
    - Checklist
    - Miuvig
    range: string
    pattern: '[^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{free_text}'
  host_spec_range:
    name: host_spec_range
    description: placeholder description; linter will ignore this
    title: host specificity or range
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000030
    alias: host_spec_range
    owner: MimsSoil
    domain_of:
    - Agriculture
    - Checklist
    - MigsBa
    - MigsEu
    - MigsPl
    - MigsVi
    - Miuvig
    range: string
    pattern: ([+-]?[1-9][0-9]*\|)*[+-]?[1-9][0-9]*
    structured_pattern:
      syntax: ({integer}\|)*{integer}
  isol_growth_condt:
    name: isol_growth_condt
    description: placeholder description; linter will ignore this
    title: isolation and growth condition
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000003
    alias: isol_growth_condt
    owner: MimsSoil
    domain_of:
    - Agriculture
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - MimarksC
    range: string
    pattern: (10.\d{4,9}/[-._;()/:a-zA-Z0-9]+)|(PMID:(\d{7,8}))|((?:https?://)?(?:www\.)?[\w-]+(?:\.[\w-]+)+[\w.,@?^=%&:/~+#-]*[\w@?^=%&/~+#-])
    structured_pattern:
      syntax: ({DOI})|({PMID})|({URL})
  mag_cov_software:
    name: mag_cov_software
    description: placeholder description; linter will ignore this
    title: MAG coverage software
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000080
    alias: mag_cov_software
    owner: MimsSoil
    domain_of:
    - Checklist
    - Mimag
    - Miuvig
    range: string
  num_replicons:
    name: num_replicons
    description: placeholder description; linter will ignore this
    title: number of replicons
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000022
    alias: num_replicons
    owner: MimsSoil
    domain_of:
    - Checklist
    - MigsBa
    - MigsEu
    - MigsVi
    range: integer
  otu_class_appr:
    name: otu_class_appr
    description: placeholder description; linter will ignore this
    title: OTU classification approach
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000085
    alias: otu_class_appr
    owner: MimsSoil
    domain_of:
    - Checklist
    - Miuvig
    range: string
  otu_db:
    name: otu_db
    description: placeholder description; linter will ignore this
    title: OTU database
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000087
    alias: otu_db
    owner: MimsSoil
    domain_of:
    - Checklist
    - Miuvig
    range: string
  otu_seq_comp_appr:
    name: otu_seq_comp_appr
    description: placeholder description; linter will ignore this
    title: OTU sequence comparison approach
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000086
    alias: otu_seq_comp_appr
    owner: MimsSoil
    domain_of:
    - Checklist
    - Miuvig
    range: string
    pattern: '[^s\|][^\r\n\t\|]*;[^s\|][^\r\n\t\|]*;[^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{software};{version};{parameters}'
  pathogenicity:
    name: pathogenicity
    description: placeholder description; linter will ignore this
    title: known pathogenicity
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000027
    alias: pathogenicity
    owner: MimsSoil
    domain_of:
    - Agriculture
    - Checklist
    - MigsBa
    - MigsEu
    - MigsVi
    - Miuvig
    range: string
    pattern: '[^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{free_text}'
  pcr_cond:
    name: pcr_cond
    description: placeholder description; linter will ignore this
    title: pcr conditions
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000049
    alias: pcr_cond
    owner: MimsSoil
    domain_of:
    - Agriculture
    - Checklist
    - MimarksC
    - MimarksS
    range: string
  pcr_primers:
    name: pcr_primers
    description: placeholder description; linter will ignore this
    title: pcr primers
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000046
    alias: pcr_primers
    owner: MimsSoil
    domain_of:
    - Agriculture
    - Checklist
    - MimarksC
    - MimarksS
    range: string
  ploidy:
    name: ploidy
    description: placeholder description; linter will ignore this
    title: ploidy
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000021
    alias: ploidy
    owner: MimsSoil
    domain_of:
    - Checklist
    - MigsEu
    range: string
    pattern: '[^s\|][^\r\n\t\|]* [[a-zA-Z]+:[0-9]+]'
    structured_pattern:
      syntax: '{term_label} [{term_id}]'
  pred_genome_struc:
    name: pred_genome_struc
    description: placeholder description; linter will ignore this
    title: predicted genome structure
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000083
    alias: pred_genome_struc
    owner: MimsSoil
    domain_of:
    - Checklist
    - Miuvig
    range: string
  pred_genome_type:
    name: pred_genome_type
    description: placeholder description; linter will ignore this
    title: predicted genome type
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000082
    alias: pred_genome_type
    owner: MimsSoil
    domain_of:
    - Checklist
    - Miuvig
    range: string
  propagation:
    name: propagation
    description: placeholder description; linter will ignore this
    title: propagation
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000033
    alias: propagation
    owner: MimsSoil
    domain_of:
    - Checklist
    - MigsEu
    - MigsPl
    - MigsVi
    range: string
    pattern: '[^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{free_text}'
  reassembly_bin:
    name: reassembly_bin
    description: placeholder description; linter will ignore this
    title: reassembly post binning
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000079
    alias: reassembly_bin
    owner: MimsSoil
    domain_of:
    - Checklist
    - Mimag
    - Miuvig
    range: boolean
  seq_quality_check:
    name: seq_quality_check
    description: placeholder description; linter will ignore this
    title: sequence quality check
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000051
    alias: seq_quality_check
    owner: MimsSoil
    domain_of:
    - Agriculture
    - Checklist
    - MimarksC
    - MimarksS
    range: string
  single_cell_lysis_appr:
    name: single_cell_lysis_appr
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    alias: single_cell_lysis_appr
    owner: MimsSoil
    domain_of:
    - Checklist
    - Misag
    - Miuvig
    range: string
  single_cell_lysis_prot:
    name: single_cell_lysis_prot
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    alias: single_cell_lysis_prot
    owner: MimsSoil
    domain_of:
    - Checklist
    - Misag
    - Miuvig
    range: string
  sort_tech:
    name: sort_tech
    description: placeholder description; linter will ignore this
    title: sorting technology
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000075
    alias: sort_tech
    owner: MimsSoil
    domain_of:
    - Checklist
    - Misag
    - Miuvig
    range: string
  source_uvig:
    name: source_uvig
    description: placeholder description; linter will ignore this
    title: source of UViGs
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000035
    alias: source_uvig
    owner: MimsSoil
    domain_of:
    - Checklist
    - Miuvig
    range: string
  specific_host:
    name: specific_host
    description: placeholder description; linter will ignore this
    title: host scientific name
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000029
    alias: specific_host
    owner: MimsSoil
    domain_of:
    - Agriculture
    - Checklist
    - MigsBa
    - MigsEu
    - MigsPl
    - MigsVi
    - Miuvig
    range: string
    pattern: '[^s\|][^\r\n\t\|]*|NCBITaxon:[0-9]+'
    structured_pattern:
      syntax: '{free_text}|{ncbi_term_id}'
  subspecf_gen_lin:
    name: subspecf_gen_lin
    description: placeholder description; linter will ignore this
    title: subspecific genetic lineage
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000020
    alias: subspecf_gen_lin
    owner: MimsSoil
    domain_of:
    - Checklist
    - FoodFoodProductionFacility
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - MimarksC
    range: string
  target_gene:
    name: target_gene
    description: placeholder description; linter will ignore this
    title: target gene
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000044
    alias: target_gene
    owner: MimsSoil
    domain_of:
    - Agriculture
    - Checklist
    - MimarksC
    - MimarksS
    range: string
    pattern: '[^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{free_text}'
  target_subfragment:
    name: target_subfragment
    description: placeholder description; linter will ignore this
    title: target subfragment
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000045
    alias: target_subfragment
    owner: MimsSoil
    domain_of:
    - Agriculture
    - Checklist
    - MimarksC
    - MimarksS
    range: string
    pattern: '[^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{free_text}'
  tax_ident:
    name: tax_ident
    description: placeholder description; linter will ignore this
    title: taxonomic identity marker
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000053
    alias: tax_ident
    owner: MimsSoil
    domain_of:
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - Misag
    - Miuvig
    range: string
  trna_ext_software:
    name: trna_ext_software
    description: placeholder description; linter will ignore this
    title: tRNA extraction software
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000068
    alias: trna_ext_software
    owner: MimsSoil
    domain_of:
    - Checklist
    - Mimag
    - Misag
    - Miuvig
    range: string
    pattern: '[^s\|][^\r\n\t\|]*;[^s\|][^\r\n\t\|]*;[^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{software};{version};{parameters}'
  trnas:
    name: trnas
    description: placeholder description; linter will ignore this
    title: number of standard tRNAs extracted
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000067
    alias: trnas
    owner: MimsSoil
    domain_of:
    - Checklist
    - Mimag
    - Misag
    - Miuvig
    range: integer
    minimum_value: 0
    maximum_value: 21
  trophic_level:
    name: trophic_level
    description: placeholder description; linter will ignore this
    title: trophic level
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000032
    alias: trophic_level
    owner: MimsSoil
    domain_of:
    - Agriculture
    - Checklist
    - MigsBa
    - MigsEu
    - MimarksC
    range: TROPHIC_LEVEL_ENUM
  vir_ident_software:
    name: vir_ident_software
    description: placeholder description; linter will ignore this
    title: viral identification software
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000081
    alias: vir_ident_software
    owner: MimsSoil
    domain_of:
    - Checklist
    - Miuvig
    range: string
    pattern: '[^s\|][^\r\n\t\|]*;[^s\|][^\r\n\t\|]*;[^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{software};{version};{parameters}'
  virus_enrich_appr:
    name: virus_enrich_appr
    description: placeholder description; linter will ignore this
    title: virus enrichment approach
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000036
    alias: virus_enrich_appr
    owner: MimsSoil
    domain_of:
    - Checklist
    - MigsVi
    - Miuvig
    range: string
  wga_amp_appr:
    name: wga_amp_appr
    description: placeholder description; linter will ignore this
    title: WGA amplification approach
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000055
    alias: wga_amp_appr
    owner: MimsSoil
    domain_of:
    - Checklist
    - Misag
    - Miuvig
    range: string
  wga_amp_kit:
    name: wga_amp_kit
    description: placeholder description; linter will ignore this
    title: WGA amplification kit
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000006
    alias: wga_amp_kit
    owner: MimsSoil
    domain_of:
    - Checklist
    - Misag
    - Miuvig
    range: string
    pattern: '[^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{free_text}'
class_uri: MIXS:0010007_0016012