Class: MimsPlantAssociated

name: MimsPlantAssociated
description: placeholder description; linter will ignore this
title: plant-associated sample according to the Mims checklist
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
is_a: PlantAssociated
mixins:
- Mims
class_uri: MIXS:0010007_0016010

name: MimsPlantAssociated
description: placeholder description; linter will ignore this
title: plant-associated sample according to the Mims checklist
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
is_a: PlantAssociated
mixins:
- Mims
attributes:
  mid:
    name: mid
    description: placeholder description; linter will ignore this
    title: multiplex identifiers
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000047
    alias: mid
    owner: MimsPlantAssociated
    domain_of:
    - Agriculture
    - Checklist
    - Mimag
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    range: string
    recommended: true
    pattern: '[ACGT]+'
    structured_pattern:
      syntax: '{dna}'
  adapters:
    name: adapters
    description: placeholder description; linter will ignore this
    title: adapters
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000048
    alias: adapters
    owner: MimsPlantAssociated
    domain_of:
    - Agriculture
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    range: string
    recommended: true
    pattern: '[ACGT]+;[ACGT]+'
    structured_pattern:
      syntax: '{dna};{dna}'
  annot:
    name: annot
    description: placeholder description; linter will ignore this
    title: annotation
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000059
    alias: annot
    owner: MimsPlantAssociated
    domain_of:
    - Agriculture
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - Mims
    - Misag
    - Miuvig
    range: string
    recommended: true
    pattern: '[^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{free_text}'
  assembly_name:
    name: assembly_name
    description: placeholder description; linter will ignore this
    title: assembly name
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000057
    alias: assembly_name
    owner: MimsPlantAssociated
    domain_of:
    - Agriculture
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - Mims
    - Misag
    - Miuvig
    range: string
    recommended: true
    pattern: '[^s\|][^\r\n\t\|]* [^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{free_text} {free_text}'
  neg_cont_type:
    name: neg_cont_type
    description: placeholder description; linter will ignore this
    title: negative control type
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0001321
    alias: neg_cont_type
    owner: MimsPlantAssociated
    domain_of:
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    range: NEG_CONT_TYPE_ENUM
    recommended: true
  nucl_acid_amp:
    name: nucl_acid_amp
    description: placeholder description; linter will ignore this
    title: nucleic acid amplification
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000038
    alias: nucl_acid_amp
    owner: MimsPlantAssociated
    domain_of:
    - Agriculture
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    range: string
    recommended: true
    pattern: (10.\d{4,9}/[-._;()/:a-zA-Z0-9]+)|(PMID:(\d{7,8}))|((?:https?://)?(?:www\.)?[\w-]+(?:\.[\w-]+)+[\w.,@?^=%&:/~+#-]*[\w@?^=%&/~+#-])
    structured_pattern:
      syntax: ({DOI})|({PMID})|({URL})
  nucl_acid_ext:
    name: nucl_acid_ext
    description: placeholder description; linter will ignore this
    title: nucleic acid extraction
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000037
    alias: nucl_acid_ext
    owner: MimsPlantAssociated
    domain_of:
    - Agriculture
    - Checklist
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    range: string
    recommended: true
    pattern: (10.\d{4,9}/[-._;()/:a-zA-Z0-9]+)|(PMID:(\d{7,8}))|((?:https?://)?(?:www\.)?[\w-]+(?:\.[\w-]+)+[\w.,@?^=%&:/~+#-]*[\w@?^=%&/~+#-])
    structured_pattern:
      syntax: ({DOI})|({PMID})|({URL})
  pos_cont_type:
    name: pos_cont_type
    description: placeholder description; linter will ignore this
    title: positive control type
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0001322
    alias: pos_cont_type
    owner: MimsPlantAssociated
    domain_of:
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    range: string
    recommended: true
  sop:
    name: sop
    description: placeholder description; linter will ignore this
    title: relevant standard operating procedures
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000090
    alias: sop
    owner: MimsPlantAssociated
    domain_of:
    - Agriculture
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    range: string
    recommended: true
    pattern: (((10.\d{4,9}/[-._;()/:a-zA-Z0-9]+)|(PMID:(\d{7,8}))|((?:https?://)?(?:www\.)?[\w-]+(?:\.[\w-]+)+[\w.,@?^=%&:/~+#-]*[\w@?^=%&/~+#-]))\|)*(((10.\d{4,9}/[-._;()/:a-zA-Z0-9]+)|(PMID:(\d{7,8}))|((?:https?://)?(?:www\.)?[\w-]+(?:\.[\w-]+)+[\w.,@?^=%&:/~+#-]*[\w@?^=%&/~+#-])))
    structured_pattern:
      syntax: ((({DOI})|({PMID})|({URL}))\|)*((({DOI})|({PMID})|({URL})))
  source_mat_id:
    name: source_mat_id
    description: placeholder description; linter will ignore this
    title: source material identifiers
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000026
    alias: source_mat_id
    owner: MimsPlantAssociated
    domain_of:
    - Agriculture
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    - SymbiontAssociated
    range: string
    recommended: true
    pattern: '[^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{free_text}'
  assembly_qual:
    name: assembly_qual
    description: placeholder description; linter will ignore this
    title: assembly quality
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000056
    alias: assembly_qual
    owner: MimsPlantAssociated
    domain_of:
    - Agriculture
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - Mims
    - Misag
    - Miuvig
    range: ASSEMBLY_QUAL_ENUM
    recommended: true
  assembly_software:
    name: assembly_software
    description: placeholder description; linter will ignore this
    title: assembly software
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000058
    alias: assembly_software
    owner: MimsPlantAssociated
    domain_of:
    - Agriculture
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    range: string
    recommended: true
    pattern: '[^s\|][^\r\n\t\|]*;[^s\|][^\r\n\t\|]*;[^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{software};{version};{parameters}'
  number_contig:
    name: number_contig
    description: placeholder description; linter will ignore this
    title: number of contigs
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000060
    alias: number_contig
    owner: MimsPlantAssociated
    domain_of:
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - Mims
    - Misag
    - Miuvig
    range: integer
    recommended: true
  experimental_factor:
    name: experimental_factor
    description: placeholder description; linter will ignore this
    title: experimental factor
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000008
    alias: experimental_factor
    owner: MimsPlantAssociated
    domain_of:
    - Checklist
    - FoodAnimalAndAnimalFeed
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    range: string
    recommended: true
  lib_layout:
    name: lib_layout
    description: placeholder description; linter will ignore this
    title: library layout
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000041
    alias: lib_layout
    owner: MimsPlantAssociated
    domain_of:
    - Agriculture
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    range: LIB_LAYOUT_ENUM
    recommended: true
  lib_reads_seqd:
    name: lib_reads_seqd
    description: placeholder description; linter will ignore this
    title: library reads sequenced
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000040
    alias: lib_reads_seqd
    owner: MimsPlantAssociated
    domain_of:
    - Agriculture
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    range: integer
    recommended: true
  lib_screen:
    name: lib_screen
    description: placeholder description; linter will ignore this
    title: library screening strategy
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000043
    alias: lib_screen
    owner: MimsPlantAssociated
    domain_of:
    - Agriculture
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    range: string
    recommended: true
    pattern: '[^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{free_text}'
  lib_size:
    name: lib_size
    description: placeholder description; linter will ignore this
    title: library size
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000039
    alias: lib_size
    owner: MimsPlantAssociated
    domain_of:
    - Agriculture
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    range: integer
    recommended: true
  lib_vector:
    name: lib_vector
    description: placeholder description; linter will ignore this
    title: library vector
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000042
    alias: lib_vector
    owner: MimsPlantAssociated
    domain_of:
    - Agriculture
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    range: string
    recommended: true
    pattern: '[^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{free_text}'
  samp_mat_process:
    name: samp_mat_process
    description: placeholder description; linter will ignore this
    title: sample material processing
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000016
    alias: samp_mat_process
    owner: MimsPlantAssociated
    domain_of:
    - Agriculture
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    range: string
    recommended: true
    pattern: '[^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{free_text}'
  samp_size:
    name: samp_size
    description: placeholder description; linter will ignore this
    title: amount or size of sample collected
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000001
    alias: samp_size
    owner: MimsPlantAssociated
    domain_of:
    - Agriculture
    - Checklist
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    range: string
    recommended: true
    pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{float} {unit}'
  alt:
    name: alt
    description: placeholder description; linter will ignore this
    title: altitude
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000094
    alias: alt
    owner: MimsPlantAssociated
    domain_of:
    - Air
    - Checklist
    - HostAssociated
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - MiscellaneousNaturalOrArtificialEnvironment
    - Miuvig
    - SymbiontAssociated
    range: string
    recommended: true
    pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{float} {unit}'
  elev:
    name: elev
    description: placeholder description; linter will ignore this
    title: elevation
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000093
    alias: elev
    owner: MimsPlantAssociated
    domain_of:
    - Agriculture
    - Air
    - Checklist
    - HostAssociated
    - HydrocarbonResourcesCores
    - MicrobialMatBiofilm
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - MiscellaneousNaturalOrArtificialEnvironment
    - Miuvig
    - PlantAssociated
    - Sediment
    - Soil
    - SymbiontAssociated
    - Water
    range: string
    recommended: true
    pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{float} {unit}'
  temp:
    name: temp
    description: placeholder description; linter will ignore this
    title: temperature
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000113
    alias: temp
    owner: MimsPlantAssociated
    domain_of:
    - Agriculture
    - Air
    - Checklist
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodHumanFoods
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - MiscellaneousNaturalOrArtificialEnvironment
    - Miuvig
    - PlantAssociated
    - Sediment
    - Soil
    - SymbiontAssociated
    - WastewaterSludge
    - Water
    range: string
    recommended: true
    pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{float} {unit}'
  rel_to_oxygen:
    name: rel_to_oxygen
    description: placeholder description; linter will ignore this
    title: relationship to oxygen
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000015
    alias: rel_to_oxygen
    owner: MimsPlantAssociated
    domain_of:
    - Checklist
    - MigsBa
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    range: string
  size_frac:
    name: size_frac
    description: placeholder description; linter will ignore this
    title: size fraction selected
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000017
    alias: size_frac
    owner: MimsPlantAssociated
    domain_of:
    - Checklist
    - Mimag
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    range: string
    pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)?-[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)?
      [^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{float}-{float} {unit}'
  feat_pred:
    name: feat_pred
    description: placeholder description; linter will ignore this
    title: feature prediction
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000061
    alias: feat_pred
    owner: MimsPlantAssociated
    domain_of:
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - Mims
    - Misag
    - Miuvig
    range: string
    pattern: '[^s\|][^\r\n\t\|]*;[^s\|][^\r\n\t\|]*;[^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{software};{version};{parameters}'
  ref_biomaterial:
    name: ref_biomaterial
    description: placeholder description; linter will ignore this
    title: reference for biomaterial
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000025
    alias: ref_biomaterial
    owner: MimsPlantAssociated
    domain_of:
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - Mims
    - Misag
    - Miuvig
    range: string
    pattern: (10.\d{4,9}/[-._;()/:a-zA-Z0-9]+)|(PMID:(\d{7,8}))|((?:https?://)?(?:www\.)?[\w-]+(?:\.[\w-]+)+[\w.,@?^=%&:/~+#-]*[\w@?^=%&/~+#-])
    structured_pattern:
      syntax: ({DOI})|({PMID})|({URL})
  ref_db:
    name: ref_db
    description: placeholder description; linter will ignore this
    title: reference database(s)
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000062
    alias: ref_db
    owner: MimsPlantAssociated
    domain_of:
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - Mims
    - Misag
    - Miuvig
    range: string
    pattern: '[^s\|][^\r\n\t\|]+;[^s\|][^\r\n\t\|]*;[^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{database};{version};{reference}'
  samp_vol_we_dna_ext:
    name: samp_vol_we_dna_ext
    description: placeholder description; linter will ignore this
    title: sample volume or weight for DNA extraction
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000111
    alias: samp_vol_we_dna_ext
    owner: MimsPlantAssociated
    domain_of:
    - Agriculture
    - Air
    - Checklist
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - MiscellaneousNaturalOrArtificialEnvironment
    - Miuvig
    - PlantAssociated
    - Sediment
    - Soil
    - SymbiontAssociated
    - WastewaterSludge
    - Water
    range: string
    pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{float} {unit}'
  sim_search_meth:
    name: sim_search_meth
    description: placeholder description; linter will ignore this
    title: similarity search method
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000063
    alias: sim_search_meth
    owner: MimsPlantAssociated
    domain_of:
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - Mims
    - Misag
    - Miuvig
    range: string
    pattern: '[^s\|][^\r\n\t\|]*;[^s\|][^\r\n\t\|]*;[^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{software};{version};{parameters}'
  tax_class:
    name: tax_class
    description: placeholder description; linter will ignore this
    title: taxonomic classification
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000064
    alias: tax_class
    owner: MimsPlantAssociated
    domain_of:
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - Mims
    - Misag
    - Miuvig
    range: string
    pattern: '[^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{free_text}'
  collection_date:
    name: collection_date
    description: placeholder description; linter will ignore this
    title: collection date
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000011
    alias: collection_date
    owner: MimsPlantAssociated
    domain_of:
    - Checklist
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    - SymbiontAssociated
    range: string
    required: true
  env_broad_scale:
    name: env_broad_scale
    description: placeholder description; linter will ignore this
    title: broad-scale environmental context
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000012
    alias: env_broad_scale
    owner: MimsPlantAssociated
    domain_of:
    - Checklist
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    - SymbiontAssociated
    range: string
    required: true
    pattern: '[^s\|][^\r\n\t\|]* [[a-zA-Z]+:[0-9]+]'
    structured_pattern:
      syntax: '{term_label} [{term_id}]'
  env_local_scale:
    name: env_local_scale
    description: placeholder description; linter will ignore this
    title: local environmental context
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000013
    alias: env_local_scale
    owner: MimsPlantAssociated
    domain_of:
    - Checklist
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    - SymbiontAssociated
    range: string
    required: true
    pattern: '[^s\|][^\r\n\t\|]* [[a-zA-Z]+:[0-9]+]'
    structured_pattern:
      syntax: '{term_label} [{term_id}]'
  env_medium:
    name: env_medium
    description: placeholder description; linter will ignore this
    title: environmental medium
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000014
    alias: env_medium
    owner: MimsPlantAssociated
    domain_of:
    - Checklist
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    - SymbiontAssociated
    range: string
    required: true
    pattern: '[^s\|][^\r\n\t\|]* [[a-zA-Z]+:[0-9]+]'
    structured_pattern:
      syntax: '{term_label} [{term_id}]'
  geo_loc_name:
    name: geo_loc_name
    description: placeholder description; linter will ignore this
    title: geographic location (country and/or sea,region)
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000010
    alias: geo_loc_name
    owner: MimsPlantAssociated
    domain_of:
    - Checklist
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    - SymbiontAssociated
    range: string
    required: true
    pattern: '[^s\|][^\r\n\t\|]*: [^s\|][^\r\n\t\|]*, [^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{term}: {term}, {free_text}'
  lat_lon:
    name: lat_lon
    description: placeholder description; linter will ignore this
    title: geographic location (latitude and longitude)
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000009
    alias: lat_lon
    owner: MimsPlantAssociated
    domain_of:
    - Checklist
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    - SymbiontAssociated
    range: string
    required: true
    pattern: '[-+]?([1-8]?\d(\.\d+)?|90(\.0+)?) [-+]?(180(\.0+)?|((1[0-7]\d)|([1-9]?\d))(\.\d+)?)'
    structured_pattern:
      syntax: '{lat} {lon}'
  project_name:
    name: project_name
    description: placeholder description; linter will ignore this
    title: project name
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000092
    alias: project_name
    owner: MimsPlantAssociated
    domain_of:
    - Air
    - BuiltEnvironment
    - Checklist
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - MiscellaneousNaturalOrArtificialEnvironment
    - Miuvig
    - PlantAssociated
    - Sediment
    - Soil
    - SymbiontAssociated
    - WastewaterSludge
    - Water
    range: string
    required: true
    pattern: '[^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{free_text}'
  samp_taxon_id:
    name: samp_taxon_id
    description: placeholder description; linter will ignore this
    title: taxonomy ID of DNA sample
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0001320
    alias: samp_taxon_id
    owner: MimsPlantAssociated
    domain_of:
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    range: string
    required: true
    pattern: '[^s\|][^\r\n\t\|]* [NCBITaxon:[0-9]+]'
    structured_pattern:
      syntax: '{term_label} [{ncbi_term_id}]'
  seq_meth:
    name: seq_meth
    description: placeholder description; linter will ignore this
    title: sequencing method
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000050
    alias: seq_meth
    owner: MimsPlantAssociated
    domain_of:
    - Agriculture
    - Checklist
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    range: string
    required: true
  air_temp_regm:
    name: air_temp_regm
    description: placeholder description; linter will ignore this
    title: air temperature regimen
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000551
    alias: air_temp_regm
    owner: MimsPlantAssociated
    domain_of:
    - PlantAssociated
    range: string
  ances_data:
    name: ances_data
    description: placeholder description; linter will ignore this
    title: ancestral data
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000247
    alias: ances_data
    owner: MimsPlantAssociated
    domain_of:
    - Agriculture
    - FoodFarmEnvironment
    - HostAssociated
    - PlantAssociated
    range: string
    pattern: '[^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{free_text}'
  antibiotic_regm:
    name: antibiotic_regm
    description: placeholder description; linter will ignore this
    title: antibiotic regimen
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000553
    alias: antibiotic_regm
    owner: MimsPlantAssociated
    domain_of:
    - PlantAssociated
    range: string
    pattern: (([^s\|][^\r\n\t\|]*;[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*;R[+-]?[1-9][0-9]*/\d{4}-\d\d-\d\d[Tt]\d\d:\d\d(:\d\d(\.\d+)?([Zz]|[\+\-]\d\d:\d\d)?)?/\d{4}-\d\d-\d\d[Tt]\d\d:\d\d(:\d\d(\.\d+)?([Zz]|[\+\-]\d\d:\d\d)?)?/P(?=\d+[YMWD])(\d+Y)?(\d+M)?(\d+W)?(\d+D)?(T(?=\d+[HMS])(\d+H)?(\d+M)?(\d+S)?)?)\|)*[^s\|][^\r\n\t\|]*;[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)?
      [^s\|][^\r\n\t\|]*;R[+-]?[1-9][0-9]*/\d{4}-\d\d-\d\d[Tt]\d\d:\d\d(:\d\d(\.\d+)?([Zz]|[\+\-]\d\d:\d\d)?)?/\d{4}-\d\d-\d\d[Tt]\d\d:\d\d(:\d\d(\.\d+)?([Zz]|[\+\-]\d\d:\d\d)?)?/P(?=\d+[YMWD])(\d+Y)?(\d+M)?(\d+W)?(\d+D)?(T(?=\d+[HMS])(\d+H)?(\d+M)?(\d+S)?)?
    structured_pattern:
      syntax: (({free_text};{float} {unit};R{integer}/{start_time}/{end_time}/{period})\|)*{free_text};{float}
        {unit};R{integer}/{start_time}/{end_time}/{period}
  biol_stat:
    name: biol_stat
    description: placeholder description; linter will ignore this
    title: biological status
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000858
    alias: biol_stat
    owner: MimsPlantAssociated
    domain_of:
    - HostAssociated
    - PlantAssociated
    range: string
  biotic_regm:
    name: biotic_regm
    description: placeholder description; linter will ignore this
    title: biotic regimen
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0001038
    alias: biotic_regm
    owner: MimsPlantAssociated
    domain_of:
    - FoodFarmEnvironment
    - PlantAssociated
    range: string
    pattern: '[^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{free_text}'
  chem_administration:
    name: chem_administration
    description: placeholder description; linter will ignore this
    title: chemical administration
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000751
    alias: chem_administration
    owner: MimsPlantAssociated
    domain_of:
    - Agriculture
    - Air
    - FoodFarmEnvironment
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - PlantAssociated
    - Sediment
    - SymbiontAssociated
    - WastewaterSludge
    - Water
    range: string
  chem_mutagen:
    name: chem_mutagen
    description: placeholder description; linter will ignore this
    title: chemical mutagen
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000555
    alias: chem_mutagen
    owner: MimsPlantAssociated
    domain_of:
    - PlantAssociated
    range: string
    pattern: '[^s\|][^\r\n\t\|]*;[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*;R[+-]?[1-9][0-9]*/\d{4}-\d\d-\d\d[Tt]\d\d:\d\d(:\d\d(\.\d+)?([Zz]|[\+\-]\d\d:\d\d)?)?/\d{4}-\d\d-\d\d[Tt]\d\d:\d\d(:\d\d(\.\d+)?([Zz]|[\+\-]\d\d:\d\d)?)?/P(?=\d+[YMWD])(\d+Y)?(\d+M)?(\d+W)?(\d+D)?(T(?=\d+[HMS])(\d+H)?(\d+M)?(\d+S)?)?'
    structured_pattern:
      syntax: '{free_text};{float} {unit};R{integer}/{start_time}/{end_time}/{period}'
  climate_environment:
    name: climate_environment
    description: placeholder description; linter will ignore this
    title: climate environment
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0001040
    alias: climate_environment
    owner: MimsPlantAssociated
    domain_of:
    - Agriculture
    - PlantAssociated
    range: string
  cult_root_med:
    name: cult_root_med
    description: placeholder description; linter will ignore this
    title: culture rooting medium
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0001041
    alias: cult_root_med
    owner: MimsPlantAssociated
    domain_of:
    - PlantAssociated
    range: string
  fertilizer_regm:
    name: fertilizer_regm
    description: placeholder description; linter will ignore this
    title: fertilizer regimen
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000556
    alias: fertilizer_regm
    owner: MimsPlantAssociated
    domain_of:
    - PlantAssociated
    range: string
    pattern: '[^s\|][^\r\n\t\|]*;[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*;R[+-]?[1-9][0-9]*/\d{4}-\d\d-\d\d[Tt]\d\d:\d\d(:\d\d(\.\d+)?([Zz]|[\+\-]\d\d:\d\d)?)?/\d{4}-\d\d-\d\d[Tt]\d\d:\d\d(:\d\d(\.\d+)?([Zz]|[\+\-]\d\d:\d\d)?)?/P(?=\d+[YMWD])(\d+Y)?(\d+M)?(\d+W)?(\d+D)?(T(?=\d+[HMS])(\d+H)?(\d+M)?(\d+S)?)?'
    structured_pattern:
      syntax: '{free_text};{float} {unit};R{integer}/{start_time}/{end_time}/{period}'
  fungicide_regm:
    name: fungicide_regm
    description: placeholder description; linter will ignore this
    title: fungicide regimen
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000557
    alias: fungicide_regm
    owner: MimsPlantAssociated
    domain_of:
    - Agriculture
    - PlantAssociated
    range: string
    pattern: '[^s\|][^\r\n\t\|]*;[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*;R[+-]?[1-9][0-9]*/\d{4}-\d\d-\d\d[Tt]\d\d:\d\d(:\d\d(\.\d+)?([Zz]|[\+\-]\d\d:\d\d)?)?/\d{4}-\d\d-\d\d[Tt]\d\d:\d\d(:\d\d(\.\d+)?([Zz]|[\+\-]\d\d:\d\d)?)?/P(?=\d+[YMWD])(\d+Y)?(\d+M)?(\d+W)?(\d+D)?(T(?=\d+[HMS])(\d+H)?(\d+M)?(\d+S)?)?'
    structured_pattern:
      syntax: '{free_text};{float} {unit};R{integer}/{start_time}/{end_time}/{period}'
  gaseous_environment:
    name: gaseous_environment
    description: placeholder description; linter will ignore this
    title: gaseous environment
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000558
    alias: gaseous_environment
    owner: MimsPlantAssociated
    domain_of:
    - Agriculture
    - PlantAssociated
    range: string
    pattern: '[^s\|][^\r\n\t\|]*;[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*;R[+-]?[1-9][0-9]*/\d{4}-\d\d-\d\d[Tt]\d\d:\d\d(:\d\d(\.\d+)?([Zz]|[\+\-]\d\d:\d\d)?)?/\d{4}-\d\d-\d\d[Tt]\d\d:\d\d(:\d\d(\.\d+)?([Zz]|[\+\-]\d\d:\d\d)?)?/P(?=\d+[YMWD])(\d+Y)?(\d+M)?(\d+W)?(\d+D)?(T(?=\d+[HMS])(\d+H)?(\d+M)?(\d+S)?)?'
    structured_pattern:
      syntax: '{free_text};{float} {unit};R{integer}/{start_time}/{end_time}/{period}'
  genetic_mod:
    name: genetic_mod
    description: placeholder description; linter will ignore this
    title: genetic modification
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000859
    alias: genetic_mod
    owner: MimsPlantAssociated
    domain_of:
    - Agriculture
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - HostAssociated
    - PlantAssociated
    range: string
    pattern: (10.\d{4,9}/[-._;()/:a-zA-Z0-9]+)|(PMID:(\d{7,8}))|((?:https?://)?(?:www\.)?[\w-]+(?:\.[\w-]+)+[\w.,@?^=%&:/~+#-]*[\w@?^=%&/~+#-])|([^s\|][^\r\n\t\|]*)
    structured_pattern:
      syntax: ({DOI})|({PMID})|({URL})|({free_text})
  gravity:
    name: gravity
    description: placeholder description; linter will ignore this
    title: gravity
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000559
    alias: gravity
    owner: MimsPlantAssociated
    domain_of:
    - PlantAssociated
    range: string
  growth_facil:
    name: growth_facil
    description: placeholder description; linter will ignore this
    title: growth facility
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0001043
    alias: growth_facil
    owner: MimsPlantAssociated
    domain_of:
    - PlantAssociated
    range: string
  growth_habit:
    name: growth_habit
    description: placeholder description; linter will ignore this
    title: growth habit
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0001044
    alias: growth_habit
    owner: MimsPlantAssociated
    domain_of:
    - FoodFarmEnvironment
    - PlantAssociated
    range: string
  growth_hormone_regm:
    name: growth_hormone_regm
    description: placeholder description; linter will ignore this
    title: growth hormone regimen
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000560
    alias: growth_hormone_regm
    owner: MimsPlantAssociated
    domain_of:
    - PlantAssociated
    range: string
    pattern: '[^s\|][^\r\n\t\|]*;[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*;R[+-]?[1-9][0-9]*/\d{4}-\d\d-\d\d[Tt]\d\d:\d\d(:\d\d(\.\d+)?([Zz]|[\+\-]\d\d:\d\d)?)?/\d{4}-\d\d-\d\d[Tt]\d\d:\d\d(:\d\d(\.\d+)?([Zz]|[\+\-]\d\d:\d\d)?)?/P(?=\d+[YMWD])(\d+Y)?(\d+M)?(\d+W)?(\d+D)?(T(?=\d+[HMS])(\d+H)?(\d+M)?(\d+S)?)?'
    structured_pattern:
      syntax: '{free_text};{float} {unit};R{integer}/{start_time}/{end_time}/{period}'
  herbicide_regm:
    name: herbicide_regm
    description: placeholder description; linter will ignore this
    title: herbicide regimen
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000561
    alias: herbicide_regm
    owner: MimsPlantAssociated
    domain_of:
    - Agriculture
    - PlantAssociated
    range: string
    pattern: '[^s\|][^\r\n\t\|]*;[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*;R[+-]?[1-9][0-9]*/\d{4}-\d\d-\d\d[Tt]\d\d:\d\d(:\d\d(\.\d+)?([Zz]|[\+\-]\d\d:\d\d)?)?/\d{4}-\d\d-\d\d[Tt]\d\d:\d\d(:\d\d(\.\d+)?([Zz]|[\+\-]\d\d:\d\d)?)?/P(?=\d+[YMWD])(\d+Y)?(\d+M)?(\d+W)?(\d+D)?(T(?=\d+[HMS])(\d+H)?(\d+M)?(\d+S)?)?'
    structured_pattern:
      syntax: '{free_text};{float} {unit};R{integer}/{start_time}/{end_time}/{period}'
  host_age:
    name: host_age
    description: placeholder description; linter will ignore this
    title: host age
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000255
    alias: host_age
    owner: MimsPlantAssociated
    domain_of:
    - Agriculture
    - FoodFarmEnvironment
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - PlantAssociated
    - SymbiontAssociated
    range: string
    pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{float} {unit}'
  host_common_name:
    name: host_common_name
    description: placeholder description; linter will ignore this
    title: host common name
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000248
    alias: host_common_name
    owner: MimsPlantAssociated
    domain_of:
    - Agriculture
    - HostAssociated
    - PlantAssociated
    - SymbiontAssociated
    range: string
    pattern: '[^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{free_text}'
  host_disease_stat:
    name: host_disease_stat
    description: placeholder description; linter will ignore this
    title: host disease status
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000031
    alias: host_disease_stat
    owner: MimsPlantAssociated
    domain_of:
    - Agriculture
    - Checklist
    - FoodFarmEnvironment
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - MigsBa
    - MigsEu
    - MigsVi
    - Miuvig
    - PlantAssociated
    range: string
    pattern: ((([^s\|][^\r\n\t\|]* [[a-zA-Z]+:[0-9]+])|[^s\|][^\r\n\t\|]*)\|)*(([^s\|][^\r\n\t\|]*
      [[a-zA-Z]+:[0-9]+])|[^s\|][^\r\n\t\|]*)
    structured_pattern:
      syntax: ((({term_label} [{term_id}])|{free_text})\|)*(({term_label} [{term_id}])|{free_text})
  host_dry_mass:
    name: host_dry_mass
    description: placeholder description; linter will ignore this
    title: host dry mass
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000257
    alias: host_dry_mass
    owner: MimsPlantAssociated
    domain_of:
    - Agriculture
    - FoodFarmEnvironment
    - HostAssociated
    - PlantAssociated
    - SymbiontAssociated
    range: string
    pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{float} {unit}'
  host_genotype:
    name: host_genotype
    description: placeholder description; linter will ignore this
    title: host genotype
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000365
    alias: host_genotype
    owner: MimsPlantAssociated
    domain_of:
    - Agriculture
    - FoodFarmEnvironment
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - PlantAssociated
    - SymbiontAssociated
    range: string
    pattern: '[^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{free_text}'
  host_height:
    name: host_height
    description: placeholder description; linter will ignore this
    title: host height
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000264
    alias: host_height
    owner: MimsPlantAssociated
    domain_of:
    - Agriculture
    - FoodFarmEnvironment
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - PlantAssociated
    - SymbiontAssociated
    range: string
    pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{float} {unit}'
  host_length:
    name: host_length
    description: placeholder description; linter will ignore this
    title: host length
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000256
    alias: host_length
    owner: MimsPlantAssociated
    domain_of:
    - Agriculture
    - FoodFarmEnvironment
    - HostAssociated
    - PlantAssociated
    - SymbiontAssociated
    range: string
    pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{float} {unit}'
  host_life_stage:
    name: host_life_stage
    description: placeholder description; linter will ignore this
    title: host life stage
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000251
    alias: host_life_stage
    owner: MimsPlantAssociated
    domain_of:
    - Agriculture
    - HostAssociated
    - PlantAssociated
    - SymbiontAssociated
    range: string
    pattern: '[^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{free_text}'
  host_phenotype:
    name: host_phenotype
    description: placeholder description; linter will ignore this
    title: host phenotype
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000874
    alias: host_phenotype
    owner: MimsPlantAssociated
    domain_of:
    - Agriculture
    - FoodFarmEnvironment
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - PlantAssociated
    - SymbiontAssociated
    range: string
    pattern: '[^s\|][^\r\n\t\|]* [[a-zA-Z]+:[0-9]+]'
    structured_pattern:
      syntax: '{term_label} [{term_id}]'
  host_subspecf_genlin:
    name: host_subspecf_genlin
    description: placeholder description; linter will ignore this
    title: host subspecific genetic lineage
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0001318
    alias: host_subspecf_genlin
    owner: MimsPlantAssociated
    domain_of:
    - Agriculture
    - FoodFarmEnvironment
    - HostAssociated
    - PlantAssociated
    range: string
  host_taxid:
    name: host_taxid
    description: placeholder description; linter will ignore this
    title: host taxid
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000250
    alias: host_taxid
    owner: MimsPlantAssociated
    domain_of:
    - Agriculture
    - FoodFarmEnvironment
    - HostAssociated
    - PlantAssociated
    - SymbiontAssociated
    range: integer
  host_tot_mass:
    name: host_tot_mass
    description: placeholder description; linter will ignore this
    title: host total mass
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000263
    alias: host_tot_mass
    owner: MimsPlantAssociated
    domain_of:
    - Agriculture
    - FoodFarmEnvironment
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - PlantAssociated
    - SymbiontAssociated
    range: string
    pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{float} {unit}'
  host_wet_mass:
    name: host_wet_mass
    description: placeholder description; linter will ignore this
    title: host wet mass
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000567
    alias: host_wet_mass
    owner: MimsPlantAssociated
    domain_of:
    - PlantAssociated
    range: string
    pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{float} {unit}'
  humidity_regm:
    name: humidity_regm
    description: placeholder description; linter will ignore this
    title: humidity regimen
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000568
    alias: humidity_regm
    owner: MimsPlantAssociated
    domain_of:
    - PlantAssociated
    range: string
  light_regm:
    name: light_regm
    description: placeholder description; linter will ignore this
    title: light regimen
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000569
    alias: light_regm
    owner: MimsPlantAssociated
    domain_of:
    - PlantAssociated
    range: string
  mechanical_damage:
    name: mechanical_damage
    description: placeholder description; linter will ignore this
    title: mechanical damage
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0001052
    alias: mechanical_damage
    owner: MimsPlantAssociated
    domain_of:
    - FoodFarmEnvironment
    - PlantAssociated
    range: string
  mineral_nutr_regm:
    name: mineral_nutr_regm
    description: placeholder description; linter will ignore this
    title: mineral nutrient regimen
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000570
    alias: mineral_nutr_regm
    owner: MimsPlantAssociated
    domain_of:
    - PlantAssociated
    range: string
    pattern: '[^s\|][^\r\n\t\|]*;[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*;R[+-]?[1-9][0-9]*/\d{4}-\d\d-\d\d[Tt]\d\d:\d\d(:\d\d(\.\d+)?([Zz]|[\+\-]\d\d:\d\d)?)?/\d{4}-\d\d-\d\d[Tt]\d\d:\d\d(:\d\d(\.\d+)?([Zz]|[\+\-]\d\d:\d\d)?)?/P(?=\d+[YMWD])(\d+Y)?(\d+M)?(\d+W)?(\d+D)?(T(?=\d+[HMS])(\d+H)?(\d+M)?(\d+S)?)?'
    structured_pattern:
      syntax: '{free_text};{float} {unit};R{integer}/{start_time}/{end_time}/{period}'
  misc_param:
    name: misc_param
    description: placeholder description; linter will ignore this
    title: miscellaneous parameter
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000752
    alias: misc_param
    owner: MimsPlantAssociated
    domain_of:
    - Agriculture
    - Air
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - PlantAssociated
    - Sediment
    - Soil
    - SymbiontAssociated
    - WastewaterSludge
    - Water
    range: string
    pattern: (([^s\|][^\r\n\t\|]*;[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*)\\|)*([^s\|][^\r\n\t\|]*;[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)?
      [^s\|][^\r\n\t\|]*)
    structured_pattern:
      syntax: (({free_text};{float} {unit})\\|)*({free_text};{float} {unit})
  non_mineral_nutr_regm:
    name: non_mineral_nutr_regm
    description: placeholder description; linter will ignore this
    title: non-mineral nutrient regimen
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000571
    alias: non_mineral_nutr_regm
    owner: MimsPlantAssociated
    domain_of:
    - Agriculture
    - PlantAssociated
    range: string
    pattern: '[^s\|][^\r\n\t\|]*;[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*;R[+-]?[1-9][0-9]*/\d{4}-\d\d-\d\d[Tt]\d\d:\d\d(:\d\d(\.\d+)?([Zz]|[\+\-]\d\d:\d\d)?)?/\d{4}-\d\d-\d\d[Tt]\d\d:\d\d(:\d\d(\.\d+)?([Zz]|[\+\-]\d\d:\d\d)?)?/P(?=\d+[YMWD])(\d+Y)?(\d+M)?(\d+W)?(\d+D)?(T(?=\d+[HMS])(\d+H)?(\d+M)?(\d+S)?)?'
    structured_pattern:
      syntax: '{free_text};{float} {unit};R{integer}/{start_time}/{end_time}/{period}'
  organism_count:
    name: organism_count
    description: placeholder description; linter will ignore this
    title: organism count
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000103
    alias: organism_count
    owner: MimsPlantAssociated
    domain_of:
    - Agriculture
    - Air
    - BuiltEnvironment
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - PlantAssociated
    - Sediment
    - SymbiontAssociated
    - WastewaterSludge
    - Water
    range: string
  oxy_stat_samp:
    name: oxy_stat_samp
    description: placeholder description; linter will ignore this
    title: oxygenation status of sample
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000753
    alias: oxy_stat_samp
    owner: MimsPlantAssociated
    domain_of:
    - Agriculture
    - Air
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - PlantAssociated
    - Sediment
    - SymbiontAssociated
    - WastewaterSludge
    - Water
    range: OXY_STAT_SAMP_ENUM
  perturbation:
    name: perturbation
    description: placeholder description; linter will ignore this
    title: perturbation
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000754
    alias: perturbation
    owner: MimsPlantAssociated
    domain_of:
    - Agriculture
    - Air
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodHumanFoods
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - PlantAssociated
    - Sediment
    - SymbiontAssociated
    - WastewaterSludge
    - Water
    range: string
  pesticide_regm:
    name: pesticide_regm
    description: placeholder description; linter will ignore this
    title: pesticide regimen
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000573
    alias: pesticide_regm
    owner: MimsPlantAssociated
    domain_of:
    - Agriculture
    - PlantAssociated
    range: string
    pattern: '[^s\|][^\r\n\t\|]*;[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*;R[+-]?[1-9][0-9]*/\d{4}-\d\d-\d\d[Tt]\d\d:\d\d(:\d\d(\.\d+)?([Zz]|[\+\-]\d\d:\d\d)?)?/\d{4}-\d\d-\d\d[Tt]\d\d:\d\d(:\d\d(\.\d+)?([Zz]|[\+\-]\d\d:\d\d)?)?/P(?=\d+[YMWD])(\d+Y)?(\d+M)?(\d+W)?(\d+D)?(T(?=\d+[HMS])(\d+H)?(\d+M)?(\d+S)?)?'
    structured_pattern:
      syntax: '{free_text};{float} {unit};R{integer}/{start_time}/{end_time}/{period}'
  ph_regm:
    name: ph_regm
    description: placeholder description; linter will ignore this
    title: pH regimen
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0001056
    alias: ph_regm
    owner: MimsPlantAssociated
    domain_of:
    - Agriculture
    - PlantAssociated
    range: string
  plant_growth_med:
    name: plant_growth_med
    description: placeholder description; linter will ignore this
    title: plant growth medium
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0001057
    alias: plant_growth_med
    owner: MimsPlantAssociated
    domain_of:
    - Agriculture
    - FoodFarmEnvironment
    - PlantAssociated
    range: string
  plant_product:
    name: plant_product
    description: placeholder description; linter will ignore this
    title: plant product
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0001058
    alias: plant_product
    owner: MimsPlantAssociated
    domain_of:
    - Agriculture
    - PlantAssociated
    range: string
    pattern: '[^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{free_text}'
  plant_sex:
    name: plant_sex
    description: placeholder description; linter will ignore this
    title: plant sex
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0001059
    alias: plant_sex
    owner: MimsPlantAssociated
    domain_of:
    - PlantAssociated
    range: string
  plant_struc:
    name: plant_struc
    description: placeholder description; linter will ignore this
    title: plant structure
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0001060
    alias: plant_struc
    owner: MimsPlantAssociated
    domain_of:
    - Agriculture
    - PlantAssociated
    range: string
    pattern: '[^s\|][^\r\n\t\|]* [[a-zA-Z]+:[0-9]+]'
    structured_pattern:
      syntax: '{term_label} [{term_id}]'
  radiation_regm:
    name: radiation_regm
    description: placeholder description; linter will ignore this
    title: radiation regimen
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000575
    alias: radiation_regm
    owner: MimsPlantAssociated
    domain_of:
    - PlantAssociated
    range: string
    pattern: '[^s\|][^\r\n\t\|]*;[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*;R[+-]?[1-9][0-9]*/\d{4}-\d\d-\d\d[Tt]\d\d:\d\d(:\d\d(\.\d+)?([Zz]|[\+\-]\d\d:\d\d)?)?/\d{4}-\d\d-\d\d[Tt]\d\d:\d\d(:\d\d(\.\d+)?([Zz]|[\+\-]\d\d:\d\d)?)?/P(?=\d+[YMWD])(\d+Y)?(\d+M)?(\d+W)?(\d+D)?(T(?=\d+[HMS])(\d+H)?(\d+M)?(\d+S)?)?'
    structured_pattern:
      syntax: '{free_text};{float} {unit};R{integer}/{start_time}/{end_time}/{period}'
  rainfall_regm:
    name: rainfall_regm
    description: placeholder description; linter will ignore this
    title: rainfall regimen
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000576
    alias: rainfall_regm
    owner: MimsPlantAssociated
    domain_of:
    - PlantAssociated
    range: string
  root_cond:
    name: root_cond
    description: placeholder description; linter will ignore this
    title: rooting conditions
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0001061
    alias: root_cond
    owner: MimsPlantAssociated
    domain_of:
    - FoodFarmEnvironment
    - PlantAssociated
    range: string
    pattern: (10.\d{4,9}/[-._;()/:a-zA-Z0-9]+)|(PMID:(\d{7,8}))|((?:https?://)?(?:www\.)?[\w-]+(?:\.[\w-]+)+[\w.,@?^=%&:/~+#-]*[\w@?^=%&/~+#-])|([^s\|][^\r\n\t\|]*)
    structured_pattern:
      syntax: ({DOI})|({PMID})|({URL})|({free_text})
  root_med_carbon:
    name: root_med_carbon
    description: placeholder description; linter will ignore this
    title: rooting medium carbon
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000577
    alias: root_med_carbon
    owner: MimsPlantAssociated
    domain_of:
    - Agriculture
    - FoodFarmEnvironment
    - PlantAssociated
    range: string
  root_med_macronutr:
    name: root_med_macronutr
    description: placeholder description; linter will ignore this
    title: rooting medium macronutrients
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000578
    alias: root_med_macronutr
    owner: MimsPlantAssociated
    domain_of:
    - Agriculture
    - FoodFarmEnvironment
    - PlantAssociated
    range: string
    pattern: '[^s\|][^\r\n\t\|]*;[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{free_text};{float} {unit}'
  root_med_micronutr:
    name: root_med_micronutr
    description: placeholder description; linter will ignore this
    title: rooting medium micronutrients
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000579
    alias: root_med_micronutr
    owner: MimsPlantAssociated
    domain_of:
    - FoodFarmEnvironment
    - PlantAssociated
    range: string
    pattern: '[^s\|][^\r\n\t\|]*;[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{free_text};{float} {unit}'
  root_med_ph:
    name: root_med_ph
    description: placeholder description; linter will ignore this
    title: rooting medium pH
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0001062
    alias: root_med_ph
    owner: MimsPlantAssociated
    domain_of:
    - Agriculture
    - FoodFarmEnvironment
    - PlantAssociated
    range: float
  root_med_regl:
    name: root_med_regl
    description: placeholder description; linter will ignore this
    title: rooting medium regulators
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000581
    alias: root_med_regl
    owner: MimsPlantAssociated
    domain_of:
    - PlantAssociated
    range: string
    pattern: '[^s\|][^\r\n\t\|]*;[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{free_text};{float} {unit}'
  root_med_solid:
    name: root_med_solid
    description: placeholder description; linter will ignore this
    title: rooting medium solidifier
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0001063
    alias: root_med_solid
    owner: MimsPlantAssociated
    domain_of:
    - PlantAssociated
    range: string
    pattern: '[^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{free_text}'
  root_med_suppl:
    name: root_med_suppl
    description: placeholder description; linter will ignore this
    title: rooting medium organic supplements
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000580
    alias: root_med_suppl
    owner: MimsPlantAssociated
    domain_of:
    - PlantAssociated
    range: string
    pattern: '[^s\|][^\r\n\t\|]*;[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{free_text};{float} {unit}'
  salinity:
    name: salinity
    description: placeholder description; linter will ignore this
    title: salinity
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000183
    alias: salinity
    owner: MimsPlantAssociated
    domain_of:
    - Air
    - FoodFarmEnvironment
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - PlantAssociated
    - Sediment
    - WastewaterSludge
    - Water
    range: string
    pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{float} {unit}'
  salt_regm:
    name: salt_regm
    description: placeholder description; linter will ignore this
    title: salt regimen
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000582
    alias: salt_regm
    owner: MimsPlantAssociated
    domain_of:
    - Agriculture
    - PlantAssociated
    range: string
    pattern: '[^s\|][^\r\n\t\|]*;[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*;R[+-]?[1-9][0-9]*/\d{4}-\d\d-\d\d[Tt]\d\d:\d\d(:\d\d(\.\d+)?([Zz]|[\+\-]\d\d:\d\d)?)?/\d{4}-\d\d-\d\d[Tt]\d\d:\d\d(:\d\d(\.\d+)?([Zz]|[\+\-]\d\d:\d\d)?)?/P(?=\d+[YMWD])(\d+Y)?(\d+M)?(\d+W)?(\d+D)?(T(?=\d+[HMS])(\d+H)?(\d+M)?(\d+S)?)?'
    structured_pattern:
      syntax: '{free_text};{float} {unit};R{integer}/{start_time}/{end_time}/{period}'
  samp_capt_status:
    name: samp_capt_status
    description: placeholder description; linter will ignore this
    title: sample capture status
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000860
    alias: samp_capt_status
    owner: MimsPlantAssociated
    domain_of:
    - HostAssociated
    - PlantAssociated
    range: string
  samp_dis_stage:
    name: samp_dis_stage
    description: placeholder description; linter will ignore this
    title: sample disease stage
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000249
    alias: samp_dis_stage
    owner: MimsPlantAssociated
    domain_of:
    - HostAssociated
    - PlantAssociated
    range: string
  samp_store_dur:
    name: samp_store_dur
    description: placeholder description; linter will ignore this
    title: sample storage duration
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000116
    alias: samp_store_dur
    owner: MimsPlantAssociated
    domain_of:
    - Agriculture
    - Air
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - PlantAssociated
    - Sediment
    - SymbiontAssociated
    - WastewaterSludge
    - Water
    range: string
    pattern: P(?=\d+[YMWD])(\d+Y)?(\d+M)?(\d+W)?(\d+D)?(T(?=\d+[HMS])(\d+H)?(\d+M)?(\d+S)?)?
    structured_pattern:
      syntax: '{period}'
  samp_store_loc:
    name: samp_store_loc
    description: placeholder description; linter will ignore this
    title: sample storage location
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000755
    alias: samp_store_loc
    owner: MimsPlantAssociated
    domain_of:
    - Agriculture
    - Air
    - FoodAnimalAndAnimalFeed
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - PlantAssociated
    - Sediment
    - SymbiontAssociated
    - WastewaterSludge
    - Water
    range: string
    pattern: '[^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{free_text}'
  samp_store_temp:
    name: samp_store_temp
    description: placeholder description; linter will ignore this
    title: sample storage temperature
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000110
    alias: samp_store_temp
    owner: MimsPlantAssociated
    domain_of:
    - Agriculture
    - Air
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - PlantAssociated
    - Sediment
    - SymbiontAssociated
    - WastewaterSludge
    - Water
    range: string
    pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{float} {unit}'
  season_environment:
    name: season_environment
    description: placeholder description; linter will ignore this
    title: seasonal environment
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0001068
    alias: season_environment
    owner: MimsPlantAssociated
    domain_of:
    - Agriculture
    - PlantAssociated
    range: string
  standing_water_regm:
    name: standing_water_regm
    description: placeholder description; linter will ignore this
    title: standing water regimen
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0001069
    alias: standing_water_regm
    owner: MimsPlantAssociated
    domain_of:
    - Agriculture
    - PlantAssociated
    range: string
  tiss_cult_growth_med:
    name: tiss_cult_growth_med
    description: placeholder description; linter will ignore this
    title: tissue culture growth media
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0001070
    alias: tiss_cult_growth_med
    owner: MimsPlantAssociated
    domain_of:
    - PlantAssociated
    range: string
    pattern: (10.\d{4,9}/[-._;()/:a-zA-Z0-9]+)|(PMID:(\d{7,8}))|((?:https?://)?(?:www\.)?[\w-]+(?:\.[\w-]+)+[\w.,@?^=%&:/~+#-]*[\w@?^=%&/~+#-])|([^s\|][^\r\n\t\|]*)
    structured_pattern:
      syntax: ({DOI})|({PMID})|({URL})|({free_text})
  water_temp_regm:
    name: water_temp_regm
    description: placeholder description; linter will ignore this
    title: water temperature regimen
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000590
    alias: water_temp_regm
    owner: MimsPlantAssociated
    domain_of:
    - Agriculture
    - PlantAssociated
    range: string
  watering_regm:
    name: watering_regm
    description: placeholder description; linter will ignore this
    title: watering regimen
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000591
    alias: watering_regm
    owner: MimsPlantAssociated
    domain_of:
    - Agriculture
    - PlantAssociated
    range: string
  bin_param:
    name: bin_param
    description: placeholder description; linter will ignore this
    title: binning parameters
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000077
    alias: bin_param
    owner: MimsPlantAssociated
    domain_of:
    - Checklist
    - Mimag
    - Miuvig
    range: string
  bin_software:
    name: bin_software
    description: placeholder description; linter will ignore this
    title: binning software
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000078
    alias: bin_software
    owner: MimsPlantAssociated
    domain_of:
    - Checklist
    - Mimag
    - Miuvig
    range: string
  biotic_relationship:
    name: biotic_relationship
    description: placeholder description; linter will ignore this
    title: observed biotic relationship
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000028
    alias: biotic_relationship
    owner: MimsPlantAssociated
    domain_of:
    - Agriculture
    - Checklist
    - MigsBa
    - MigsEu
    - MigsVi
    - MimarksC
    - Miuvig
    range: BIOTIC_RELATIONSHIP_ENUM
  chimera_check:
    name: chimera_check
    description: placeholder description; linter will ignore this
    title: chimera check software
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000052
    alias: chimera_check
    owner: MimsPlantAssociated
    domain_of:
    - Agriculture
    - Checklist
    - MimarksC
    - MimarksS
    range: string
  compl_appr:
    name: compl_appr
    description: placeholder description; linter will ignore this
    title: completeness approach
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000071
    alias: compl_appr
    owner: MimsPlantAssociated
    domain_of:
    - Checklist
    - Mimag
    - Misag
    - Miuvig
    range: string
  compl_score:
    name: compl_score
    description: placeholder description; linter will ignore this
    title: completeness score
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000069
    alias: compl_score
    owner: MimsPlantAssociated
    domain_of:
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - Misag
    - Miuvig
    range: string
  compl_software:
    name: compl_software
    description: placeholder description; linter will ignore this
    title: completeness software
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000070
    alias: compl_software
    owner: MimsPlantAssociated
    domain_of:
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - Misag
    - Miuvig
    range: string
    pattern: '[^s\|][^\r\n\t\|]*;[^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{software};{version}'
  contam_score:
    name: contam_score
    description: placeholder description; linter will ignore this
    title: contamination score
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000072
    alias: contam_score
    owner: MimsPlantAssociated
    domain_of:
    - Checklist
    - Mimag
    - Misag
    range: string
  contam_screen_input:
    name: contam_screen_input
    description: placeholder description; linter will ignore this
    title: contamination screening input
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000005
    alias: contam_screen_input
    owner: MimsPlantAssociated
    domain_of:
    - Checklist
    - Mimag
    - Misag
    range: string
  contam_screen_param:
    name: contam_screen_param
    description: placeholder description; linter will ignore this
    title: contamination screening parameters
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000073
    alias: contam_screen_param
    owner: MimsPlantAssociated
    domain_of:
    - Checklist
    - Mimag
    - Misag
    range: string
  decontam_software:
    name: decontam_software
    description: placeholder description; linter will ignore this
    title: decontamination software
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000074
    alias: decontam_software
    owner: MimsPlantAssociated
    domain_of:
    - Checklist
    - Mimag
    - Misag
    range: string
  detec_type:
    name: detec_type
    description: placeholder description; linter will ignore this
    title: detection type
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000084
    alias: detec_type
    owner: MimsPlantAssociated
    domain_of:
    - Checklist
    - Miuvig
    range: string
  encoded_traits:
    name: encoded_traits
    description: placeholder description; linter will ignore this
    title: encoded traits
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000034
    alias: encoded_traits
    owner: MimsPlantAssociated
    domain_of:
    - Checklist
    - MigsBa
    - MigsPl
    - MigsVi
    range: string
    pattern: '[^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{free_text}'
  estimated_size:
    name: estimated_size
    description: placeholder description; linter will ignore this
    title: estimated size
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000024
    alias: estimated_size
    owner: MimsPlantAssociated
    domain_of:
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Miuvig
    range: string
    pattern: '[+-]?[1-9][0-9]* bp'
    structured_pattern:
      syntax: '{integer} bp'
  extrachrom_elements:
    name: extrachrom_elements
    description: placeholder description; linter will ignore this
    title: extrachromosomal elements
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000023
    alias: extrachrom_elements
    owner: MimsPlantAssociated
    domain_of:
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MimarksC
    range: integer
  host_pred_appr:
    name: host_pred_appr
    description: placeholder description; linter will ignore this
    title: host prediction approach
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000088
    alias: host_pred_appr
    owner: MimsPlantAssociated
    domain_of:
    - Checklist
    - Miuvig
    range: string
  host_pred_est_acc:
    name: host_pred_est_acc
    description: placeholder description; linter will ignore this
    title: host prediction estimated accuracy
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000089
    alias: host_pred_est_acc
    owner: MimsPlantAssociated
    domain_of:
    - Checklist
    - Miuvig
    range: string
    pattern: '[^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{free_text}'
  host_spec_range:
    name: host_spec_range
    description: placeholder description; linter will ignore this
    title: host specificity or range
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000030
    alias: host_spec_range
    owner: MimsPlantAssociated
    domain_of:
    - Agriculture
    - Checklist
    - MigsBa
    - MigsEu
    - MigsPl
    - MigsVi
    - Miuvig
    range: string
    pattern: ([+-]?[1-9][0-9]*\|)*[+-]?[1-9][0-9]*
    structured_pattern:
      syntax: ({integer}\|)*{integer}
  isol_growth_condt:
    name: isol_growth_condt
    description: placeholder description; linter will ignore this
    title: isolation and growth condition
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000003
    alias: isol_growth_condt
    owner: MimsPlantAssociated
    domain_of:
    - Agriculture
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - MimarksC
    range: string
    pattern: (10.\d{4,9}/[-._;()/:a-zA-Z0-9]+)|(PMID:(\d{7,8}))|((?:https?://)?(?:www\.)?[\w-]+(?:\.[\w-]+)+[\w.,@?^=%&:/~+#-]*[\w@?^=%&/~+#-])
    structured_pattern:
      syntax: ({DOI})|({PMID})|({URL})
  mag_cov_software:
    name: mag_cov_software
    description: placeholder description; linter will ignore this
    title: MAG coverage software
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000080
    alias: mag_cov_software
    owner: MimsPlantAssociated
    domain_of:
    - Checklist
    - Mimag
    - Miuvig
    range: string
  num_replicons:
    name: num_replicons
    description: placeholder description; linter will ignore this
    title: number of replicons
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000022
    alias: num_replicons
    owner: MimsPlantAssociated
    domain_of:
    - Checklist
    - MigsBa
    - MigsEu
    - MigsVi
    range: integer
  otu_class_appr:
    name: otu_class_appr
    description: placeholder description; linter will ignore this
    title: OTU classification approach
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000085
    alias: otu_class_appr
    owner: MimsPlantAssociated
    domain_of:
    - Checklist
    - Miuvig
    range: string
  otu_db:
    name: otu_db
    description: placeholder description; linter will ignore this
    title: OTU database
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000087
    alias: otu_db
    owner: MimsPlantAssociated
    domain_of:
    - Checklist
    - Miuvig
    range: string
  otu_seq_comp_appr:
    name: otu_seq_comp_appr
    description: placeholder description; linter will ignore this
    title: OTU sequence comparison approach
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000086
    alias: otu_seq_comp_appr
    owner: MimsPlantAssociated
    domain_of:
    - Checklist
    - Miuvig
    range: string
    pattern: '[^s\|][^\r\n\t\|]*;[^s\|][^\r\n\t\|]*;[^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{software};{version};{parameters}'
  pathogenicity:
    name: pathogenicity
    description: placeholder description; linter will ignore this
    title: known pathogenicity
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000027
    alias: pathogenicity
    owner: MimsPlantAssociated
    domain_of:
    - Agriculture
    - Checklist
    - MigsBa
    - MigsEu
    - MigsVi
    - Miuvig
    range: string
    pattern: '[^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{free_text}'
  pcr_cond:
    name: pcr_cond
    description: placeholder description; linter will ignore this
    title: pcr conditions
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000049
    alias: pcr_cond
    owner: MimsPlantAssociated
    domain_of:
    - Agriculture
    - Checklist
    - MimarksC
    - MimarksS
    range: string
  pcr_primers:
    name: pcr_primers
    description: placeholder description; linter will ignore this
    title: pcr primers
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000046
    alias: pcr_primers
    owner: MimsPlantAssociated
    domain_of:
    - Agriculture
    - Checklist
    - MimarksC
    - MimarksS
    range: string
  ploidy:
    name: ploidy
    description: placeholder description; linter will ignore this
    title: ploidy
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000021
    alias: ploidy
    owner: MimsPlantAssociated
    domain_of:
    - Checklist
    - MigsEu
    range: string
    pattern: '[^s\|][^\r\n\t\|]* [[a-zA-Z]+:[0-9]+]'
    structured_pattern:
      syntax: '{term_label} [{term_id}]'
  pred_genome_struc:
    name: pred_genome_struc
    description: placeholder description; linter will ignore this
    title: predicted genome structure
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000083
    alias: pred_genome_struc
    owner: MimsPlantAssociated
    domain_of:
    - Checklist
    - Miuvig
    range: string
  pred_genome_type:
    name: pred_genome_type
    description: placeholder description; linter will ignore this
    title: predicted genome type
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000082
    alias: pred_genome_type
    owner: MimsPlantAssociated
    domain_of:
    - Checklist
    - Miuvig
    range: string
  propagation:
    name: propagation
    description: placeholder description; linter will ignore this
    title: propagation
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000033
    alias: propagation
    owner: MimsPlantAssociated
    domain_of:
    - Checklist
    - MigsEu
    - MigsPl
    - MigsVi
    range: string
    pattern: '[^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{free_text}'
  reassembly_bin:
    name: reassembly_bin
    description: placeholder description; linter will ignore this
    title: reassembly post binning
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000079
    alias: reassembly_bin
    owner: MimsPlantAssociated
    domain_of:
    - Checklist
    - Mimag
    - Miuvig
    range: boolean
  seq_quality_check:
    name: seq_quality_check
    description: placeholder description; linter will ignore this
    title: sequence quality check
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000051
    alias: seq_quality_check
    owner: MimsPlantAssociated
    domain_of:
    - Agriculture
    - Checklist
    - MimarksC
    - MimarksS
    range: string
  single_cell_lysis_appr:
    name: single_cell_lysis_appr
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    alias: single_cell_lysis_appr
    owner: MimsPlantAssociated
    domain_of:
    - Checklist
    - Misag
    - Miuvig
    range: string
  single_cell_lysis_prot:
    name: single_cell_lysis_prot
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    alias: single_cell_lysis_prot
    owner: MimsPlantAssociated
    domain_of:
    - Checklist
    - Misag
    - Miuvig
    range: string
  sort_tech:
    name: sort_tech
    description: placeholder description; linter will ignore this
    title: sorting technology
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000075
    alias: sort_tech
    owner: MimsPlantAssociated
    domain_of:
    - Checklist
    - Misag
    - Miuvig
    range: string
  source_uvig:
    name: source_uvig
    description: placeholder description; linter will ignore this
    title: source of UViGs
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000035
    alias: source_uvig
    owner: MimsPlantAssociated
    domain_of:
    - Checklist
    - Miuvig
    range: string
  specific_host:
    name: specific_host
    description: placeholder description; linter will ignore this
    title: host scientific name
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000029
    alias: specific_host
    owner: MimsPlantAssociated
    domain_of:
    - Agriculture
    - Checklist
    - MigsBa
    - MigsEu
    - MigsPl
    - MigsVi
    - Miuvig
    range: string
    pattern: '[^s\|][^\r\n\t\|]*|NCBITaxon:[0-9]+'
    structured_pattern:
      syntax: '{free_text}|{ncbi_term_id}'
  subspecf_gen_lin:
    name: subspecf_gen_lin
    description: placeholder description; linter will ignore this
    title: subspecific genetic lineage
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000020
    alias: subspecf_gen_lin
    owner: MimsPlantAssociated
    domain_of:
    - Checklist
    - FoodFoodProductionFacility
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - MimarksC
    range: string
  target_gene:
    name: target_gene
    description: placeholder description; linter will ignore this
    title: target gene
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000044
    alias: target_gene
    owner: MimsPlantAssociated
    domain_of:
    - Agriculture
    - Checklist
    - MimarksC
    - MimarksS
    range: string
    pattern: '[^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{free_text}'
  target_subfragment:
    name: target_subfragment
    description: placeholder description; linter will ignore this
    title: target subfragment
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000045
    alias: target_subfragment
    owner: MimsPlantAssociated
    domain_of:
    - Agriculture
    - Checklist
    - MimarksC
    - MimarksS
    range: string
    pattern: '[^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{free_text}'
  tax_ident:
    name: tax_ident
    description: placeholder description; linter will ignore this
    title: taxonomic identity marker
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000053
    alias: tax_ident
    owner: MimsPlantAssociated
    domain_of:
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - Misag
    - Miuvig
    range: string
  trna_ext_software:
    name: trna_ext_software
    description: placeholder description; linter will ignore this
    title: tRNA extraction software
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000068
    alias: trna_ext_software
    owner: MimsPlantAssociated
    domain_of:
    - Checklist
    - Mimag
    - Misag
    - Miuvig
    range: string
    pattern: '[^s\|][^\r\n\t\|]*;[^s\|][^\r\n\t\|]*;[^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{software};{version};{parameters}'
  trnas:
    name: trnas
    description: placeholder description; linter will ignore this
    title: number of standard tRNAs extracted
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000067
    alias: trnas
    owner: MimsPlantAssociated
    domain_of:
    - Checklist
    - Mimag
    - Misag
    - Miuvig
    range: integer
    minimum_value: 0
    maximum_value: 21
  trophic_level:
    name: trophic_level
    description: placeholder description; linter will ignore this
    title: trophic level
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000032
    alias: trophic_level
    owner: MimsPlantAssociated
    domain_of:
    - Agriculture
    - Checklist
    - MigsBa
    - MigsEu
    - MimarksC
    range: TROPHIC_LEVEL_ENUM
  vir_ident_software:
    name: vir_ident_software
    description: placeholder description; linter will ignore this
    title: viral identification software
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000081
    alias: vir_ident_software
    owner: MimsPlantAssociated
    domain_of:
    - Checklist
    - Miuvig
    range: string
    pattern: '[^s\|][^\r\n\t\|]*;[^s\|][^\r\n\t\|]*;[^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{software};{version};{parameters}'
  virus_enrich_appr:
    name: virus_enrich_appr
    description: placeholder description; linter will ignore this
    title: virus enrichment approach
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000036
    alias: virus_enrich_appr
    owner: MimsPlantAssociated
    domain_of:
    - Checklist
    - MigsVi
    - Miuvig
    range: string
  wga_amp_appr:
    name: wga_amp_appr
    description: placeholder description; linter will ignore this
    title: WGA amplification approach
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000055
    alias: wga_amp_appr
    owner: MimsPlantAssociated
    domain_of:
    - Checklist
    - Misag
    - Miuvig
    range: string
  wga_amp_kit:
    name: wga_amp_kit
    description: placeholder description; linter will ignore this
    title: WGA amplification kit
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000006
    alias: wga_amp_kit
    owner: MimsPlantAssociated
    domain_of:
    - Checklist
    - Misag
    - Miuvig
    range: string
    pattern: '[^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{free_text}'
class_uri: MIXS:0010007_0016010