Class: MimarksC

placeholder description; linter will ignore this

classDiagram class MimarksC Checklist <|-- MimarksC MimarksC : adapters MimarksC : alt MimarksC : annot MimarksC : assembly_name MimarksC : assembly_qual MimarksC --|> ASSEMBLY_QUAL_ENUM : assembly_qual MimarksC : assembly_software MimarksC : bin_param MimarksC : bin_software MimarksC : biotic_relationship MimarksC --|> BIOTIC_RELATIONSHIP_ENUM : biotic_relationship MimarksC : chimera_check MimarksC : collection_date MimarksC : compl_appr MimarksC : compl_score MimarksC : compl_software MimarksC : contam_score MimarksC : contam_screen_input MimarksC : contam_screen_param MimarksC : decontam_software MimarksC : detec_type MimarksC : elev MimarksC : encoded_traits MimarksC : env_broad_scale MimarksC : env_local_scale MimarksC : env_medium MimarksC : estimated_size MimarksC : experimental_factor MimarksC : extrachrom_elements MimarksC : feat_pred MimarksC : geo_loc_name MimarksC : host_disease_stat MimarksC : host_pred_appr MimarksC : host_pred_est_acc MimarksC : host_spec_range MimarksC : isol_growth_condt MimarksC : lat_lon MimarksC : lib_layout MimarksC --|> LIB_LAYOUT_ENUM : lib_layout MimarksC : lib_reads_seqd MimarksC : lib_screen MimarksC : lib_size MimarksC : lib_vector MimarksC : mag_cov_software MimarksC : mid MimarksC : neg_cont_type MimarksC --|> NEG_CONT_TYPE_ENUM : neg_cont_type MimarksC : nucl_acid_amp MimarksC : nucl_acid_ext MimarksC : num_replicons MimarksC : number_contig MimarksC : otu_class_appr MimarksC : otu_db MimarksC : otu_seq_comp_appr MimarksC : pathogenicity MimarksC : pcr_cond MimarksC : pcr_primers MimarksC : ploidy MimarksC : pos_cont_type MimarksC : pred_genome_struc MimarksC : pred_genome_type MimarksC : project_name MimarksC : propagation MimarksC : reassembly_bin MimarksC : ref_biomaterial MimarksC : ref_db MimarksC : rel_to_oxygen MimarksC : samp_mat_process MimarksC : samp_size MimarksC : samp_taxon_id MimarksC : samp_vol_we_dna_ext MimarksC : seq_meth MimarksC : seq_quality_check MimarksC : sim_search_meth MimarksC : single_cell_lysis_appr MimarksC : single_cell_lysis_prot MimarksC : size_frac MimarksC : sop MimarksC : sort_tech MimarksC : source_mat_id MimarksC : source_uvig MimarksC : specific_host MimarksC : subspecf_gen_lin MimarksC : target_gene MimarksC : target_subfragment MimarksC : tax_class MimarksC : tax_ident MimarksC : temp MimarksC : trna_ext_software MimarksC : trnas MimarksC : trophic_level MimarksC --|> TROPHIC_LEVEL_ENUM : trophic_level MimarksC : vir_ident_software MimarksC : virus_enrich_appr MimarksC : wga_amp_appr MimarksC : wga_amp_kit

Inheritance

Checklist
- MimarksC

Slots

Name	Cardinality and Range	Description	Inheritance
chimera_check	0..1 recommended String	placeholder description; linter will ignore this	direct
pcr_cond	0..1 recommended String	placeholder description; linter will ignore this	direct
pcr_primers	0..1 recommended String	placeholder description; linter will ignore this	direct
rel_to_oxygen	0..1 recommended String	placeholder description; linter will ignore this	direct
seq_quality_check	0..1 recommended String	placeholder description; linter will ignore this	direct
target_subfragment	0..1 recommended String	placeholder description; linter will ignore this	direct
neg_cont_type	0..1 recommended NEGCONTTYPEENUM	placeholder description; linter will ignore this	direct
nucl_acid_amp	0..1 recommended String	placeholder description; linter will ignore this	direct
nucl_acid_ext	0..1 recommended String	placeholder description; linter will ignore this	direct
pos_cont_type	0..1 recommended String	placeholder description; linter will ignore this	direct
sop	0..1 recommended String	placeholder description; linter will ignore this	direct
source_mat_id	0..1 recommended String	placeholder description; linter will ignore this	direct
subspecf_gen_lin	0..1 recommended String	placeholder description; linter will ignore this	direct
trophic_level	0..1 recommended TROPHICLEVELENUM	placeholder description; linter will ignore this	direct
biotic_relationship	0..1 recommended BIOTICRELATIONSHIPENUM	placeholder description; linter will ignore this	direct
samp_mat_process	0..1 recommended String	placeholder description; linter will ignore this	direct
alt	0..1 recommended String	placeholder description; linter will ignore this	direct
elev	0..1 recommended String	placeholder description; linter will ignore this	direct
temp	0..1 recommended String	placeholder description; linter will ignore this	direct
experimental_factor	0..1 String	placeholder description; linter will ignore this	direct
extrachrom_elements	0..1 Integer	placeholder description; linter will ignore this	direct
samp_size	0..1 String	placeholder description; linter will ignore this	direct
samp_vol_we_dna_ext	0..1 String	placeholder description; linter will ignore this	direct
target_gene	1..1 String	placeholder description; linter will ignore this	direct
collection_date	1..1 String	placeholder description; linter will ignore this	direct
env_broad_scale	1..1 String	placeholder description; linter will ignore this	direct
env_local_scale	1..1 String	placeholder description; linter will ignore this	direct
env_medium	1..1 String	placeholder description; linter will ignore this	direct
geo_loc_name	1..1 String	placeholder description; linter will ignore this	direct
isol_growth_condt	1..1 String	placeholder description; linter will ignore this	direct
lat_lon	1..1 String	placeholder description; linter will ignore this	direct
project_name	1..1 String	placeholder description; linter will ignore this	direct
samp_taxon_id	1..1 String	placeholder description; linter will ignore this	direct
seq_meth	1..1 String	placeholder description; linter will ignore this	direct
adapters	0..1 String	placeholder description; linter will ignore this	Checklist
annot	0..1 String	placeholder description; linter will ignore this	Checklist
assembly_name	0..1 String	placeholder description; linter will ignore this	Checklist
assembly_qual	0..1 ASSEMBLYQUALENUM	placeholder description; linter will ignore this	Checklist
assembly_software	0..1 String	placeholder description; linter will ignore this	Checklist
bin_param	0..1 String	placeholder description; linter will ignore this	Checklist
bin_software	0..1 String	placeholder description; linter will ignore this	Checklist
compl_appr	0..1 String	placeholder description; linter will ignore this	Checklist
compl_score	0..1 String	placeholder description; linter will ignore this	Checklist
compl_software	0..1 String	placeholder description; linter will ignore this	Checklist
contam_score	0..1 String	placeholder description; linter will ignore this	Checklist
contam_screen_input	0..1 String	placeholder description; linter will ignore this	Checklist
contam_screen_param	0..1 String	placeholder description; linter will ignore this	Checklist
decontam_software	0..1 String	placeholder description; linter will ignore this	Checklist
detec_type	0..1 String	placeholder description; linter will ignore this	Checklist
encoded_traits	0..1 String	placeholder description; linter will ignore this	Checklist
estimated_size	0..1 String	placeholder description; linter will ignore this	Checklist
feat_pred	0..1 String	placeholder description; linter will ignore this	Checklist
host_disease_stat	0..1 String	placeholder description; linter will ignore this	Checklist
host_pred_appr	0..1 String	placeholder description; linter will ignore this	Checklist
host_pred_est_acc	0..1 String	placeholder description; linter will ignore this	Checklist
host_spec_range	0..1 String	placeholder description; linter will ignore this	Checklist
lib_layout	0..1 LIBLAYOUTENUM	placeholder description; linter will ignore this	Checklist
lib_reads_seqd	0..1 Integer	placeholder description; linter will ignore this	Checklist
lib_screen	0..1 String	placeholder description; linter will ignore this	Checklist
lib_size	0..1 Integer	placeholder description; linter will ignore this	Checklist
lib_vector	0..1 String	placeholder description; linter will ignore this	Checklist
mag_cov_software	0..1 String	placeholder description; linter will ignore this	Checklist
mid	0..1 String	placeholder description; linter will ignore this	Checklist
num_replicons	0..1 Integer	placeholder description; linter will ignore this	Checklist
number_contig	0..1 Integer	placeholder description; linter will ignore this	Checklist
otu_class_appr	0..1 String	placeholder description; linter will ignore this	Checklist
otu_db	0..1 String	placeholder description; linter will ignore this	Checklist
otu_seq_comp_appr	0..1 String	placeholder description; linter will ignore this	Checklist
pathogenicity	0..1 String	placeholder description; linter will ignore this	Checklist
ploidy	0..1 String	placeholder description; linter will ignore this	Checklist
pred_genome_struc	0..1 String	placeholder description; linter will ignore this	Checklist
pred_genome_type	0..1 String	placeholder description; linter will ignore this	Checklist
propagation	0..1 String	placeholder description; linter will ignore this	Checklist
reassembly_bin	0..1 Boolean	placeholder description; linter will ignore this	Checklist
ref_biomaterial	0..1 String	placeholder description; linter will ignore this	Checklist
ref_db	0..1 String	placeholder description; linter will ignore this	Checklist
sim_search_meth	0..1 String	placeholder description; linter will ignore this	Checklist
single_cell_lysis_appr	0..1 String		Checklist
single_cell_lysis_prot	0..1 String		Checklist
size_frac	0..1 String	placeholder description; linter will ignore this	Checklist
sort_tech	0..1 String	placeholder description; linter will ignore this	Checklist
source_uvig	0..1 String	placeholder description; linter will ignore this	Checklist
specific_host	0..1 String	placeholder description; linter will ignore this	Checklist
tax_class	0..1 String	placeholder description; linter will ignore this	Checklist
tax_ident	0..1 String	placeholder description; linter will ignore this	Checklist
trna_ext_software	0..1 String	placeholder description; linter will ignore this	Checklist
trnas	0..1 Integer	placeholder description; linter will ignore this	Checklist
vir_ident_software	0..1 String	placeholder description; linter will ignore this	Checklist
virus_enrich_appr	0..1 String	placeholder description; linter will ignore this	Checklist
wga_amp_appr	0..1 String	placeholder description; linter will ignore this	Checklist
wga_amp_kit	0..1 String	placeholder description; linter will ignore this	Checklist

Mixin Usage

mixed into	description

Identifier and Mapping Information

Schema Source

from schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first

Mappings

Mapping Type	Mapped Value
self	MIXS:0010009
native	MIXS:MimarksC

LinkML Source

Direct

name: MimarksC
description: placeholder description; linter will ignore this
title: mimarks_c
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
is_a: Checklist
mixin: true
slots:
- chimera_check
- pcr_cond
- pcr_primers
- rel_to_oxygen
- seq_quality_check
- target_subfragment
- neg_cont_type
- nucl_acid_amp
- nucl_acid_ext
- pos_cont_type
- sop
- source_mat_id
- subspecf_gen_lin
- trophic_level
- biotic_relationship
- samp_mat_process
- alt
- elev
- temp
- experimental_factor
- extrachrom_elements
- samp_size
- samp_vol_we_dna_ext
- target_gene
- collection_date
- env_broad_scale
- env_local_scale
- env_medium
- geo_loc_name
- isol_growth_condt
- lat_lon
- project_name
- samp_taxon_id
- seq_meth
slot_usage:
  alt:
    name: alt
    domain_of:
    - Air
    - Checklist
    - HostAssociated
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - MiscellaneousNaturalOrArtificialEnvironment
    - Miuvig
    - SymbiontAssociated
    recommended: true
  biotic_relationship:
    name: biotic_relationship
    domain_of:
    - Agriculture
    - Checklist
    - MigsBa
    - MigsEu
    - MigsVi
    - MimarksC
    - Miuvig
    recommended: true
  chimera_check:
    name: chimera_check
    domain_of:
    - Agriculture
    - Checklist
    - MimarksC
    - MimarksS
    recommended: true
  collection_date:
    name: collection_date
    domain_of:
    - Checklist
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    - SymbiontAssociated
    required: true
  elev:
    name: elev
    domain_of:
    - Agriculture
    - Air
    - Checklist
    - HostAssociated
    - HydrocarbonResourcesCores
    - MicrobialMatBiofilm
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - MiscellaneousNaturalOrArtificialEnvironment
    - Miuvig
    - PlantAssociated
    - Sediment
    - Soil
    - SymbiontAssociated
    - Water
    recommended: true
  env_broad_scale:
    name: env_broad_scale
    domain_of:
    - Checklist
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    - SymbiontAssociated
    required: true
  env_local_scale:
    name: env_local_scale
    domain_of:
    - Checklist
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    - SymbiontAssociated
    required: true
  env_medium:
    name: env_medium
    domain_of:
    - Checklist
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    - SymbiontAssociated
    required: true
  experimental_factor:
    name: experimental_factor
    domain_of:
    - Checklist
    - FoodAnimalAndAnimalFeed
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
  extrachrom_elements:
    name: extrachrom_elements
    domain_of:
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MimarksC
  geo_loc_name:
    name: geo_loc_name
    domain_of:
    - Checklist
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    - SymbiontAssociated
    required: true
  isol_growth_condt:
    name: isol_growth_condt
    domain_of:
    - Agriculture
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - MimarksC
    required: true
  lat_lon:
    name: lat_lon
    domain_of:
    - Checklist
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    - SymbiontAssociated
    required: true
  neg_cont_type:
    name: neg_cont_type
    domain_of:
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    recommended: true
  nucl_acid_amp:
    name: nucl_acid_amp
    domain_of:
    - Agriculture
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    recommended: true
  nucl_acid_ext:
    name: nucl_acid_ext
    domain_of:
    - Agriculture
    - Checklist
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    recommended: true
  pcr_cond:
    name: pcr_cond
    domain_of:
    - Agriculture
    - Checklist
    - MimarksC
    - MimarksS
    recommended: true
  pcr_primers:
    name: pcr_primers
    domain_of:
    - Agriculture
    - Checklist
    - MimarksC
    - MimarksS
    recommended: true
  pos_cont_type:
    name: pos_cont_type
    domain_of:
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    recommended: true
  project_name:
    name: project_name
    domain_of:
    - Air
    - BuiltEnvironment
    - Checklist
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - MiscellaneousNaturalOrArtificialEnvironment
    - Miuvig
    - PlantAssociated
    - Sediment
    - Soil
    - SymbiontAssociated
    - WastewaterSludge
    - Water
    required: true
  rel_to_oxygen:
    name: rel_to_oxygen
    domain_of:
    - Checklist
    - MigsBa
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    recommended: true
  samp_mat_process:
    name: samp_mat_process
    domain_of:
    - Agriculture
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    recommended: true
  samp_size:
    name: samp_size
    domain_of:
    - Agriculture
    - Checklist
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
  samp_taxon_id:
    name: samp_taxon_id
    domain_of:
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    required: true
  samp_vol_we_dna_ext:
    name: samp_vol_we_dna_ext
    domain_of:
    - Agriculture
    - Air
    - Checklist
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - MiscellaneousNaturalOrArtificialEnvironment
    - Miuvig
    - PlantAssociated
    - Sediment
    - Soil
    - SymbiontAssociated
    - WastewaterSludge
    - Water
  seq_meth:
    name: seq_meth
    domain_of:
    - Agriculture
    - Checklist
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    required: true
  seq_quality_check:
    name: seq_quality_check
    domain_of:
    - Agriculture
    - Checklist
    - MimarksC
    - MimarksS
    recommended: true
  sop:
    name: sop
    domain_of:
    - Agriculture
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    recommended: true
  source_mat_id:
    name: source_mat_id
    domain_of:
    - Agriculture
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    - SymbiontAssociated
    recommended: true
  subspecf_gen_lin:
    name: subspecf_gen_lin
    domain_of:
    - Checklist
    - FoodFoodProductionFacility
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - MimarksC
    recommended: true
  target_gene:
    name: target_gene
    domain_of:
    - Agriculture
    - Checklist
    - MimarksC
    - MimarksS
    required: true
  target_subfragment:
    name: target_subfragment
    domain_of:
    - Agriculture
    - Checklist
    - MimarksC
    - MimarksS
    recommended: true
  temp:
    name: temp
    domain_of:
    - Agriculture
    - Air
    - Checklist
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodHumanFoods
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - MiscellaneousNaturalOrArtificialEnvironment
    - Miuvig
    - PlantAssociated
    - Sediment
    - Soil
    - SymbiontAssociated
    - WastewaterSludge
    - Water
    recommended: true
  trophic_level:
    name: trophic_level
    domain_of:
    - Agriculture
    - Checklist
    - MigsBa
    - MigsEu
    - MimarksC
    recommended: true
class_uri: MIXS:0010009

Induced

name: MimarksC
description: placeholder description; linter will ignore this
title: mimarks_c
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
is_a: Checklist
mixin: true
slot_usage:
  alt:
    name: alt
    domain_of:
    - Air
    - Checklist
    - HostAssociated
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - MiscellaneousNaturalOrArtificialEnvironment
    - Miuvig
    - SymbiontAssociated
    recommended: true
  biotic_relationship:
    name: biotic_relationship
    domain_of:
    - Agriculture
    - Checklist
    - MigsBa
    - MigsEu
    - MigsVi
    - MimarksC
    - Miuvig
    recommended: true
  chimera_check:
    name: chimera_check
    domain_of:
    - Agriculture
    - Checklist
    - MimarksC
    - MimarksS
    recommended: true
  collection_date:
    name: collection_date
    domain_of:
    - Checklist
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    - SymbiontAssociated
    required: true
  elev:
    name: elev
    domain_of:
    - Agriculture
    - Air
    - Checklist
    - HostAssociated
    - HydrocarbonResourcesCores
    - MicrobialMatBiofilm
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - MiscellaneousNaturalOrArtificialEnvironment
    - Miuvig
    - PlantAssociated
    - Sediment
    - Soil
    - SymbiontAssociated
    - Water
    recommended: true
  env_broad_scale:
    name: env_broad_scale
    domain_of:
    - Checklist
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    - SymbiontAssociated
    required: true
  env_local_scale:
    name: env_local_scale
    domain_of:
    - Checklist
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    - SymbiontAssociated
    required: true
  env_medium:
    name: env_medium
    domain_of:
    - Checklist
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    - SymbiontAssociated
    required: true
  experimental_factor:
    name: experimental_factor
    domain_of:
    - Checklist
    - FoodAnimalAndAnimalFeed
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
  extrachrom_elements:
    name: extrachrom_elements
    domain_of:
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MimarksC
  geo_loc_name:
    name: geo_loc_name
    domain_of:
    - Checklist
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    - SymbiontAssociated
    required: true
  isol_growth_condt:
    name: isol_growth_condt
    domain_of:
    - Agriculture
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - MimarksC
    required: true
  lat_lon:
    name: lat_lon
    domain_of:
    - Checklist
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    - SymbiontAssociated
    required: true
  neg_cont_type:
    name: neg_cont_type
    domain_of:
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    recommended: true
  nucl_acid_amp:
    name: nucl_acid_amp
    domain_of:
    - Agriculture
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    recommended: true
  nucl_acid_ext:
    name: nucl_acid_ext
    domain_of:
    - Agriculture
    - Checklist
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    recommended: true
  pcr_cond:
    name: pcr_cond
    domain_of:
    - Agriculture
    - Checklist
    - MimarksC
    - MimarksS
    recommended: true
  pcr_primers:
    name: pcr_primers
    domain_of:
    - Agriculture
    - Checklist
    - MimarksC
    - MimarksS
    recommended: true
  pos_cont_type:
    name: pos_cont_type
    domain_of:
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    recommended: true
  project_name:
    name: project_name
    domain_of:
    - Air
    - BuiltEnvironment
    - Checklist
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - MiscellaneousNaturalOrArtificialEnvironment
    - Miuvig
    - PlantAssociated
    - Sediment
    - Soil
    - SymbiontAssociated
    - WastewaterSludge
    - Water
    required: true
  rel_to_oxygen:
    name: rel_to_oxygen
    domain_of:
    - Checklist
    - MigsBa
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    recommended: true
  samp_mat_process:
    name: samp_mat_process
    domain_of:
    - Agriculture
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    recommended: true
  samp_size:
    name: samp_size
    domain_of:
    - Agriculture
    - Checklist
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
  samp_taxon_id:
    name: samp_taxon_id
    domain_of:
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    required: true
  samp_vol_we_dna_ext:
    name: samp_vol_we_dna_ext
    domain_of:
    - Agriculture
    - Air
    - Checklist
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - MiscellaneousNaturalOrArtificialEnvironment
    - Miuvig
    - PlantAssociated
    - Sediment
    - Soil
    - SymbiontAssociated
    - WastewaterSludge
    - Water
  seq_meth:
    name: seq_meth
    domain_of:
    - Agriculture
    - Checklist
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    required: true
  seq_quality_check:
    name: seq_quality_check
    domain_of:
    - Agriculture
    - Checklist
    - MimarksC
    - MimarksS
    recommended: true
  sop:
    name: sop
    domain_of:
    - Agriculture
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    recommended: true
  source_mat_id:
    name: source_mat_id
    domain_of:
    - Agriculture
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    - SymbiontAssociated
    recommended: true
  subspecf_gen_lin:
    name: subspecf_gen_lin
    domain_of:
    - Checklist
    - FoodFoodProductionFacility
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - MimarksC
    recommended: true
  target_gene:
    name: target_gene
    domain_of:
    - Agriculture
    - Checklist
    - MimarksC
    - MimarksS
    required: true
  target_subfragment:
    name: target_subfragment
    domain_of:
    - Agriculture
    - Checklist
    - MimarksC
    - MimarksS
    recommended: true
  temp:
    name: temp
    domain_of:
    - Agriculture
    - Air
    - Checklist
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodHumanFoods
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - MiscellaneousNaturalOrArtificialEnvironment
    - Miuvig
    - PlantAssociated
    - Sediment
    - Soil
    - SymbiontAssociated
    - WastewaterSludge
    - Water
    recommended: true
  trophic_level:
    name: trophic_level
    domain_of:
    - Agriculture
    - Checklist
    - MigsBa
    - MigsEu
    - MimarksC
    recommended: true
attributes:
  chimera_check:
    name: chimera_check
    description: placeholder description; linter will ignore this
    title: chimera check software
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000052
    alias: chimera_check
    owner: MimarksC
    domain_of:
    - Agriculture
    - Checklist
    - MimarksC
    - MimarksS
    range: string
    recommended: true
  pcr_cond:
    name: pcr_cond
    description: placeholder description; linter will ignore this
    title: pcr conditions
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000049
    alias: pcr_cond
    owner: MimarksC
    domain_of:
    - Agriculture
    - Checklist
    - MimarksC
    - MimarksS
    range: string
    recommended: true
  pcr_primers:
    name: pcr_primers
    description: placeholder description; linter will ignore this
    title: pcr primers
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000046
    alias: pcr_primers
    owner: MimarksC
    domain_of:
    - Agriculture
    - Checklist
    - MimarksC
    - MimarksS
    range: string
    recommended: true
  rel_to_oxygen:
    name: rel_to_oxygen
    description: placeholder description; linter will ignore this
    title: relationship to oxygen
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000015
    alias: rel_to_oxygen
    owner: MimarksC
    domain_of:
    - Checklist
    - MigsBa
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    range: string
    recommended: true
  seq_quality_check:
    name: seq_quality_check
    description: placeholder description; linter will ignore this
    title: sequence quality check
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000051
    alias: seq_quality_check
    owner: MimarksC
    domain_of:
    - Agriculture
    - Checklist
    - MimarksC
    - MimarksS
    range: string
    recommended: true
  target_subfragment:
    name: target_subfragment
    description: placeholder description; linter will ignore this
    title: target subfragment
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000045
    alias: target_subfragment
    owner: MimarksC
    domain_of:
    - Agriculture
    - Checklist
    - MimarksC
    - MimarksS
    range: string
    recommended: true
    pattern: '[^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{free_text}'
  neg_cont_type:
    name: neg_cont_type
    description: placeholder description; linter will ignore this
    title: negative control type
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0001321
    alias: neg_cont_type
    owner: MimarksC
    domain_of:
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    range: NEG_CONT_TYPE_ENUM
    recommended: true
  nucl_acid_amp:
    name: nucl_acid_amp
    description: placeholder description; linter will ignore this
    title: nucleic acid amplification
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000038
    alias: nucl_acid_amp
    owner: MimarksC
    domain_of:
    - Agriculture
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    range: string
    recommended: true
    pattern: (10.\d{4,9}/[-._;()/:a-zA-Z0-9]+)|(PMID:(\d{7,8}))|((?:https?://)?(?:www\.)?[\w-]+(?:\.[\w-]+)+[\w.,@?^=%&:/~+#-]*[\w@?^=%&/~+#-])
    structured_pattern:
      syntax: ({DOI})|({PMID})|({URL})
  nucl_acid_ext:
    name: nucl_acid_ext
    description: placeholder description; linter will ignore this
    title: nucleic acid extraction
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000037
    alias: nucl_acid_ext
    owner: MimarksC
    domain_of:
    - Agriculture
    - Checklist
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    range: string
    recommended: true
    pattern: (10.\d{4,9}/[-._;()/:a-zA-Z0-9]+)|(PMID:(\d{7,8}))|((?:https?://)?(?:www\.)?[\w-]+(?:\.[\w-]+)+[\w.,@?^=%&:/~+#-]*[\w@?^=%&/~+#-])
    structured_pattern:
      syntax: ({DOI})|({PMID})|({URL})
  pos_cont_type:
    name: pos_cont_type
    description: placeholder description; linter will ignore this
    title: positive control type
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0001322
    alias: pos_cont_type
    owner: MimarksC
    domain_of:
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    range: string
    recommended: true
  sop:
    name: sop
    description: placeholder description; linter will ignore this
    title: relevant standard operating procedures
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000090
    alias: sop
    owner: MimarksC
    domain_of:
    - Agriculture
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    range: string
    recommended: true
    pattern: (((10.\d{4,9}/[-._;()/:a-zA-Z0-9]+)|(PMID:(\d{7,8}))|((?:https?://)?(?:www\.)?[\w-]+(?:\.[\w-]+)+[\w.,@?^=%&:/~+#-]*[\w@?^=%&/~+#-]))\|)*(((10.\d{4,9}/[-._;()/:a-zA-Z0-9]+)|(PMID:(\d{7,8}))|((?:https?://)?(?:www\.)?[\w-]+(?:\.[\w-]+)+[\w.,@?^=%&:/~+#-]*[\w@?^=%&/~+#-])))
    structured_pattern:
      syntax: ((({DOI})|({PMID})|({URL}))\|)*((({DOI})|({PMID})|({URL})))
  source_mat_id:
    name: source_mat_id
    description: placeholder description; linter will ignore this
    title: source material identifiers
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000026
    alias: source_mat_id
    owner: MimarksC
    domain_of:
    - Agriculture
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    - SymbiontAssociated
    range: string
    recommended: true
    pattern: '[^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{free_text}'
  subspecf_gen_lin:
    name: subspecf_gen_lin
    description: placeholder description; linter will ignore this
    title: subspecific genetic lineage
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000020
    alias: subspecf_gen_lin
    owner: MimarksC
    domain_of:
    - Checklist
    - FoodFoodProductionFacility
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - MimarksC
    range: string
    recommended: true
  trophic_level:
    name: trophic_level
    description: placeholder description; linter will ignore this
    title: trophic level
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000032
    alias: trophic_level
    owner: MimarksC
    domain_of:
    - Agriculture
    - Checklist
    - MigsBa
    - MigsEu
    - MimarksC
    range: TROPHIC_LEVEL_ENUM
    recommended: true
  biotic_relationship:
    name: biotic_relationship
    description: placeholder description; linter will ignore this
    title: observed biotic relationship
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000028
    alias: biotic_relationship
    owner: MimarksC
    domain_of:
    - Agriculture
    - Checklist
    - MigsBa
    - MigsEu
    - MigsVi
    - MimarksC
    - Miuvig
    range: BIOTIC_RELATIONSHIP_ENUM
    recommended: true
  samp_mat_process:
    name: samp_mat_process
    description: placeholder description; linter will ignore this
    title: sample material processing
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000016
    alias: samp_mat_process
    owner: MimarksC
    domain_of:
    - Agriculture
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    range: string
    recommended: true
    pattern: '[^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{free_text}'
  alt:
    name: alt
    description: placeholder description; linter will ignore this
    title: altitude
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000094
    alias: alt
    owner: MimarksC
    domain_of:
    - Air
    - Checklist
    - HostAssociated
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - MiscellaneousNaturalOrArtificialEnvironment
    - Miuvig
    - SymbiontAssociated
    range: string
    recommended: true
    pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{float} {unit}'
  elev:
    name: elev
    description: placeholder description; linter will ignore this
    title: elevation
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000093
    alias: elev
    owner: MimarksC
    domain_of:
    - Agriculture
    - Air
    - Checklist
    - HostAssociated
    - HydrocarbonResourcesCores
    - MicrobialMatBiofilm
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - MiscellaneousNaturalOrArtificialEnvironment
    - Miuvig
    - PlantAssociated
    - Sediment
    - Soil
    - SymbiontAssociated
    - Water
    range: string
    recommended: true
    pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{float} {unit}'
  temp:
    name: temp
    description: placeholder description; linter will ignore this
    title: temperature
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000113
    alias: temp
    owner: MimarksC
    domain_of:
    - Agriculture
    - Air
    - Checklist
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodHumanFoods
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - MiscellaneousNaturalOrArtificialEnvironment
    - Miuvig
    - PlantAssociated
    - Sediment
    - Soil
    - SymbiontAssociated
    - WastewaterSludge
    - Water
    range: string
    recommended: true
    pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{float} {unit}'
  experimental_factor:
    name: experimental_factor
    description: placeholder description; linter will ignore this
    title: experimental factor
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000008
    alias: experimental_factor
    owner: MimarksC
    domain_of:
    - Checklist
    - FoodAnimalAndAnimalFeed
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    range: string
  extrachrom_elements:
    name: extrachrom_elements
    description: placeholder description; linter will ignore this
    title: extrachromosomal elements
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000023
    alias: extrachrom_elements
    owner: MimarksC
    domain_of:
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MimarksC
    range: integer
  samp_size:
    name: samp_size
    description: placeholder description; linter will ignore this
    title: amount or size of sample collected
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000001
    alias: samp_size
    owner: MimarksC
    domain_of:
    - Agriculture
    - Checklist
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    range: string
    pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{float} {unit}'
  samp_vol_we_dna_ext:
    name: samp_vol_we_dna_ext
    description: placeholder description; linter will ignore this
    title: sample volume or weight for DNA extraction
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000111
    alias: samp_vol_we_dna_ext
    owner: MimarksC
    domain_of:
    - Agriculture
    - Air
    - Checklist
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - MiscellaneousNaturalOrArtificialEnvironment
    - Miuvig
    - PlantAssociated
    - Sediment
    - Soil
    - SymbiontAssociated
    - WastewaterSludge
    - Water
    range: string
    pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{float} {unit}'
  target_gene:
    name: target_gene
    description: placeholder description; linter will ignore this
    title: target gene
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000044
    alias: target_gene
    owner: MimarksC
    domain_of:
    - Agriculture
    - Checklist
    - MimarksC
    - MimarksS
    range: string
    required: true
    pattern: '[^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{free_text}'
  collection_date:
    name: collection_date
    description: placeholder description; linter will ignore this
    title: collection date
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000011
    alias: collection_date
    owner: MimarksC
    domain_of:
    - Checklist
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    - SymbiontAssociated
    range: string
    required: true
  env_broad_scale:
    name: env_broad_scale
    description: placeholder description; linter will ignore this
    title: broad-scale environmental context
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000012
    alias: env_broad_scale
    owner: MimarksC
    domain_of:
    - Checklist
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    - SymbiontAssociated
    range: string
    required: true
    pattern: '[^s\|][^\r\n\t\|]* [[a-zA-Z]+:[0-9]+]'
    structured_pattern:
      syntax: '{term_label} [{term_id}]'
  env_local_scale:
    name: env_local_scale
    description: placeholder description; linter will ignore this
    title: local environmental context
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000013
    alias: env_local_scale
    owner: MimarksC
    domain_of:
    - Checklist
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    - SymbiontAssociated
    range: string
    required: true
    pattern: '[^s\|][^\r\n\t\|]* [[a-zA-Z]+:[0-9]+]'
    structured_pattern:
      syntax: '{term_label} [{term_id}]'
  env_medium:
    name: env_medium
    description: placeholder description; linter will ignore this
    title: environmental medium
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000014
    alias: env_medium
    owner: MimarksC
    domain_of:
    - Checklist
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    - SymbiontAssociated
    range: string
    required: true
    pattern: '[^s\|][^\r\n\t\|]* [[a-zA-Z]+:[0-9]+]'
    structured_pattern:
      syntax: '{term_label} [{term_id}]'
  geo_loc_name:
    name: geo_loc_name
    description: placeholder description; linter will ignore this
    title: geographic location (country and/or sea,region)
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000010
    alias: geo_loc_name
    owner: MimarksC
    domain_of:
    - Checklist
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    - SymbiontAssociated
    range: string
    required: true
    pattern: '[^s\|][^\r\n\t\|]*: [^s\|][^\r\n\t\|]*, [^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{term}: {term}, {free_text}'
  isol_growth_condt:
    name: isol_growth_condt
    description: placeholder description; linter will ignore this
    title: isolation and growth condition
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000003
    alias: isol_growth_condt
    owner: MimarksC
    domain_of:
    - Agriculture
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - MimarksC
    range: string
    required: true
    pattern: (10.\d{4,9}/[-._;()/:a-zA-Z0-9]+)|(PMID:(\d{7,8}))|((?:https?://)?(?:www\.)?[\w-]+(?:\.[\w-]+)+[\w.,@?^=%&:/~+#-]*[\w@?^=%&/~+#-])
    structured_pattern:
      syntax: ({DOI})|({PMID})|({URL})
  lat_lon:
    name: lat_lon
    description: placeholder description; linter will ignore this
    title: geographic location (latitude and longitude)
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000009
    alias: lat_lon
    owner: MimarksC
    domain_of:
    - Checklist
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    - SymbiontAssociated
    range: string
    required: true
    pattern: '[-+]?([1-8]?\d(\.\d+)?|90(\.0+)?) [-+]?(180(\.0+)?|((1[0-7]\d)|([1-9]?\d))(\.\d+)?)'
    structured_pattern:
      syntax: '{lat} {lon}'
  project_name:
    name: project_name
    description: placeholder description; linter will ignore this
    title: project name
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000092
    alias: project_name
    owner: MimarksC
    domain_of:
    - Air
    - BuiltEnvironment
    - Checklist
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - MiscellaneousNaturalOrArtificialEnvironment
    - Miuvig
    - PlantAssociated
    - Sediment
    - Soil
    - SymbiontAssociated
    - WastewaterSludge
    - Water
    range: string
    required: true
    pattern: '[^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{free_text}'
  samp_taxon_id:
    name: samp_taxon_id
    description: placeholder description; linter will ignore this
    title: taxonomy ID of DNA sample
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0001320
    alias: samp_taxon_id
    owner: MimarksC
    domain_of:
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    range: string
    required: true
    pattern: '[^s\|][^\r\n\t\|]* [NCBITaxon:[0-9]+]'
    structured_pattern:
      syntax: '{term_label} [{ncbi_term_id}]'
  seq_meth:
    name: seq_meth
    description: placeholder description; linter will ignore this
    title: sequencing method
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000050
    alias: seq_meth
    owner: MimarksC
    domain_of:
    - Agriculture
    - Checklist
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    range: string
    required: true
  adapters:
    name: adapters
    description: placeholder description; linter will ignore this
    title: adapters
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000048
    alias: adapters
    owner: MimarksC
    domain_of:
    - Agriculture
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    range: string
    pattern: '[ACGT]+;[ACGT]+'
    structured_pattern:
      syntax: '{dna};{dna}'
  annot:
    name: annot
    description: placeholder description; linter will ignore this
    title: annotation
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000059
    alias: annot
    owner: MimarksC
    domain_of:
    - Agriculture
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - Mims
    - Misag
    - Miuvig
    range: string
    pattern: '[^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{free_text}'
  assembly_name:
    name: assembly_name
    description: placeholder description; linter will ignore this
    title: assembly name
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000057
    alias: assembly_name
    owner: MimarksC
    domain_of:
    - Agriculture
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - Mims
    - Misag
    - Miuvig
    range: string
    pattern: '[^s\|][^\r\n\t\|]* [^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{free_text} {free_text}'
  assembly_qual:
    name: assembly_qual
    description: placeholder description; linter will ignore this
    title: assembly quality
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000056
    alias: assembly_qual
    owner: MimarksC
    domain_of:
    - Agriculture
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - Mims
    - Misag
    - Miuvig
    range: ASSEMBLY_QUAL_ENUM
  assembly_software:
    name: assembly_software
    description: placeholder description; linter will ignore this
    title: assembly software
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000058
    alias: assembly_software
    owner: MimarksC
    domain_of:
    - Agriculture
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    range: string
    pattern: '[^s\|][^\r\n\t\|]*;[^s\|][^\r\n\t\|]*;[^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{software};{version};{parameters}'
  bin_param:
    name: bin_param
    description: placeholder description; linter will ignore this
    title: binning parameters
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000077
    alias: bin_param
    owner: MimarksC
    domain_of:
    - Checklist
    - Mimag
    - Miuvig
    range: string
  bin_software:
    name: bin_software
    description: placeholder description; linter will ignore this
    title: binning software
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000078
    alias: bin_software
    owner: MimarksC
    domain_of:
    - Checklist
    - Mimag
    - Miuvig
    range: string
  compl_appr:
    name: compl_appr
    description: placeholder description; linter will ignore this
    title: completeness approach
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000071
    alias: compl_appr
    owner: MimarksC
    domain_of:
    - Checklist
    - Mimag
    - Misag
    - Miuvig
    range: string
  compl_score:
    name: compl_score
    description: placeholder description; linter will ignore this
    title: completeness score
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000069
    alias: compl_score
    owner: MimarksC
    domain_of:
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - Misag
    - Miuvig
    range: string
  compl_software:
    name: compl_software
    description: placeholder description; linter will ignore this
    title: completeness software
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000070
    alias: compl_software
    owner: MimarksC
    domain_of:
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - Misag
    - Miuvig
    range: string
    pattern: '[^s\|][^\r\n\t\|]*;[^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{software};{version}'
  contam_score:
    name: contam_score
    description: placeholder description; linter will ignore this
    title: contamination score
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000072
    alias: contam_score
    owner: MimarksC
    domain_of:
    - Checklist
    - Mimag
    - Misag
    range: string
  contam_screen_input:
    name: contam_screen_input
    description: placeholder description; linter will ignore this
    title: contamination screening input
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000005
    alias: contam_screen_input
    owner: MimarksC
    domain_of:
    - Checklist
    - Mimag
    - Misag
    range: string
  contam_screen_param:
    name: contam_screen_param
    description: placeholder description; linter will ignore this
    title: contamination screening parameters
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000073
    alias: contam_screen_param
    owner: MimarksC
    domain_of:
    - Checklist
    - Mimag
    - Misag
    range: string
  decontam_software:
    name: decontam_software
    description: placeholder description; linter will ignore this
    title: decontamination software
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000074
    alias: decontam_software
    owner: MimarksC
    domain_of:
    - Checklist
    - Mimag
    - Misag
    range: string
  detec_type:
    name: detec_type
    description: placeholder description; linter will ignore this
    title: detection type
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000084
    alias: detec_type
    owner: MimarksC
    domain_of:
    - Checklist
    - Miuvig
    range: string
  encoded_traits:
    name: encoded_traits
    description: placeholder description; linter will ignore this
    title: encoded traits
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000034
    alias: encoded_traits
    owner: MimarksC
    domain_of:
    - Checklist
    - MigsBa
    - MigsPl
    - MigsVi
    range: string
    pattern: '[^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{free_text}'
  estimated_size:
    name: estimated_size
    description: placeholder description; linter will ignore this
    title: estimated size
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000024
    alias: estimated_size
    owner: MimarksC
    domain_of:
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Miuvig
    range: string
    pattern: '[+-]?[1-9][0-9]* bp'
    structured_pattern:
      syntax: '{integer} bp'
  feat_pred:
    name: feat_pred
    description: placeholder description; linter will ignore this
    title: feature prediction
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000061
    alias: feat_pred
    owner: MimarksC
    domain_of:
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - Mims
    - Misag
    - Miuvig
    range: string
    pattern: '[^s\|][^\r\n\t\|]*;[^s\|][^\r\n\t\|]*;[^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{software};{version};{parameters}'
  host_disease_stat:
    name: host_disease_stat
    description: placeholder description; linter will ignore this
    title: host disease status
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000031
    alias: host_disease_stat
    owner: MimarksC
    domain_of:
    - Agriculture
    - Checklist
    - FoodFarmEnvironment
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - MigsBa
    - MigsEu
    - MigsVi
    - Miuvig
    - PlantAssociated
    range: string
    pattern: ((([^s\|][^\r\n\t\|]* [[a-zA-Z]+:[0-9]+])|[^s\|][^\r\n\t\|]*)\|)*(([^s\|][^\r\n\t\|]*
      [[a-zA-Z]+:[0-9]+])|[^s\|][^\r\n\t\|]*)
    structured_pattern:
      syntax: ((({term_label} [{term_id}])|{free_text})\|)*(({term_label} [{term_id}])|{free_text})
  host_pred_appr:
    name: host_pred_appr
    description: placeholder description; linter will ignore this
    title: host prediction approach
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000088
    alias: host_pred_appr
    owner: MimarksC
    domain_of:
    - Checklist
    - Miuvig
    range: string
  host_pred_est_acc:
    name: host_pred_est_acc
    description: placeholder description; linter will ignore this
    title: host prediction estimated accuracy
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000089
    alias: host_pred_est_acc
    owner: MimarksC
    domain_of:
    - Checklist
    - Miuvig
    range: string
    pattern: '[^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{free_text}'
  host_spec_range:
    name: host_spec_range
    description: placeholder description; linter will ignore this
    title: host specificity or range
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000030
    alias: host_spec_range
    owner: MimarksC
    domain_of:
    - Agriculture
    - Checklist
    - MigsBa
    - MigsEu
    - MigsPl
    - MigsVi
    - Miuvig
    range: string
    pattern: ([+-]?[1-9][0-9]*\|)*[+-]?[1-9][0-9]*
    structured_pattern:
      syntax: ({integer}\|)*{integer}
  lib_layout:
    name: lib_layout
    description: placeholder description; linter will ignore this
    title: library layout
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000041
    alias: lib_layout
    owner: MimarksC
    domain_of:
    - Agriculture
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    range: LIB_LAYOUT_ENUM
  lib_reads_seqd:
    name: lib_reads_seqd
    description: placeholder description; linter will ignore this
    title: library reads sequenced
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000040
    alias: lib_reads_seqd
    owner: MimarksC
    domain_of:
    - Agriculture
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    range: integer
  lib_screen:
    name: lib_screen
    description: placeholder description; linter will ignore this
    title: library screening strategy
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000043
    alias: lib_screen
    owner: MimarksC
    domain_of:
    - Agriculture
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    range: string
    pattern: '[^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{free_text}'
  lib_size:
    name: lib_size
    description: placeholder description; linter will ignore this
    title: library size
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000039
    alias: lib_size
    owner: MimarksC
    domain_of:
    - Agriculture
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    range: integer
  lib_vector:
    name: lib_vector
    description: placeholder description; linter will ignore this
    title: library vector
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000042
    alias: lib_vector
    owner: MimarksC
    domain_of:
    - Agriculture
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    range: string
    pattern: '[^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{free_text}'
  mag_cov_software:
    name: mag_cov_software
    description: placeholder description; linter will ignore this
    title: MAG coverage software
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000080
    alias: mag_cov_software
    owner: MimarksC
    domain_of:
    - Checklist
    - Mimag
    - Miuvig
    range: string
  mid:
    name: mid
    description: placeholder description; linter will ignore this
    title: multiplex identifiers
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000047
    alias: mid
    owner: MimarksC
    domain_of:
    - Agriculture
    - Checklist
    - Mimag
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    range: string
    pattern: '[ACGT]+'
    structured_pattern:
      syntax: '{dna}'
  num_replicons:
    name: num_replicons
    description: placeholder description; linter will ignore this
    title: number of replicons
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000022
    alias: num_replicons
    owner: MimarksC
    domain_of:
    - Checklist
    - MigsBa
    - MigsEu
    - MigsVi
    range: integer
  number_contig:
    name: number_contig
    description: placeholder description; linter will ignore this
    title: number of contigs
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000060
    alias: number_contig
    owner: MimarksC
    domain_of:
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - Mims
    - Misag
    - Miuvig
    range: integer
  otu_class_appr:
    name: otu_class_appr
    description: placeholder description; linter will ignore this
    title: OTU classification approach
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000085
    alias: otu_class_appr
    owner: MimarksC
    domain_of:
    - Checklist
    - Miuvig
    range: string
  otu_db:
    name: otu_db
    description: placeholder description; linter will ignore this
    title: OTU database
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000087
    alias: otu_db
    owner: MimarksC
    domain_of:
    - Checklist
    - Miuvig
    range: string
  otu_seq_comp_appr:
    name: otu_seq_comp_appr
    description: placeholder description; linter will ignore this
    title: OTU sequence comparison approach
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000086
    alias: otu_seq_comp_appr
    owner: MimarksC
    domain_of:
    - Checklist
    - Miuvig
    range: string
    pattern: '[^s\|][^\r\n\t\|]*;[^s\|][^\r\n\t\|]*;[^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{software};{version};{parameters}'
  pathogenicity:
    name: pathogenicity
    description: placeholder description; linter will ignore this
    title: known pathogenicity
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000027
    alias: pathogenicity
    owner: MimarksC
    domain_of:
    - Agriculture
    - Checklist
    - MigsBa
    - MigsEu
    - MigsVi
    - Miuvig
    range: string
    pattern: '[^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{free_text}'
  ploidy:
    name: ploidy
    description: placeholder description; linter will ignore this
    title: ploidy
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000021
    alias: ploidy
    owner: MimarksC
    domain_of:
    - Checklist
    - MigsEu
    range: string
    pattern: '[^s\|][^\r\n\t\|]* [[a-zA-Z]+:[0-9]+]'
    structured_pattern:
      syntax: '{term_label} [{term_id}]'
  pred_genome_struc:
    name: pred_genome_struc
    description: placeholder description; linter will ignore this
    title: predicted genome structure
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000083
    alias: pred_genome_struc
    owner: MimarksC
    domain_of:
    - Checklist
    - Miuvig
    range: string
  pred_genome_type:
    name: pred_genome_type
    description: placeholder description; linter will ignore this
    title: predicted genome type
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000082
    alias: pred_genome_type
    owner: MimarksC
    domain_of:
    - Checklist
    - Miuvig
    range: string
  propagation:
    name: propagation
    description: placeholder description; linter will ignore this
    title: propagation
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000033
    alias: propagation
    owner: MimarksC
    domain_of:
    - Checklist
    - MigsEu
    - MigsPl
    - MigsVi
    range: string
    pattern: '[^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{free_text}'
  reassembly_bin:
    name: reassembly_bin
    description: placeholder description; linter will ignore this
    title: reassembly post binning
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000079
    alias: reassembly_bin
    owner: MimarksC
    domain_of:
    - Checklist
    - Mimag
    - Miuvig
    range: boolean
  ref_biomaterial:
    name: ref_biomaterial
    description: placeholder description; linter will ignore this
    title: reference for biomaterial
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000025
    alias: ref_biomaterial
    owner: MimarksC
    domain_of:
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - Mims
    - Misag
    - Miuvig
    range: string
    pattern: (10.\d{4,9}/[-._;()/:a-zA-Z0-9]+)|(PMID:(\d{7,8}))|((?:https?://)?(?:www\.)?[\w-]+(?:\.[\w-]+)+[\w.,@?^=%&:/~+#-]*[\w@?^=%&/~+#-])
    structured_pattern:
      syntax: ({DOI})|({PMID})|({URL})
  ref_db:
    name: ref_db
    description: placeholder description; linter will ignore this
    title: reference database(s)
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000062
    alias: ref_db
    owner: MimarksC
    domain_of:
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - Mims
    - Misag
    - Miuvig
    range: string
    pattern: '[^s\|][^\r\n\t\|]+;[^s\|][^\r\n\t\|]*;[^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{database};{version};{reference}'
  sim_search_meth:
    name: sim_search_meth
    description: placeholder description; linter will ignore this
    title: similarity search method
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000063
    alias: sim_search_meth
    owner: MimarksC
    domain_of:
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - Mims
    - Misag
    - Miuvig
    range: string
    pattern: '[^s\|][^\r\n\t\|]*;[^s\|][^\r\n\t\|]*;[^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{software};{version};{parameters}'
  single_cell_lysis_appr:
    name: single_cell_lysis_appr
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    alias: single_cell_lysis_appr
    owner: MimarksC
    domain_of:
    - Checklist
    - Misag
    - Miuvig
    range: string
  single_cell_lysis_prot:
    name: single_cell_lysis_prot
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    alias: single_cell_lysis_prot
    owner: MimarksC
    domain_of:
    - Checklist
    - Misag
    - Miuvig
    range: string
  size_frac:
    name: size_frac
    description: placeholder description; linter will ignore this
    title: size fraction selected
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000017
    alias: size_frac
    owner: MimarksC
    domain_of:
    - Checklist
    - Mimag
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    range: string
    pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)?-[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)?
      [^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{float}-{float} {unit}'
  sort_tech:
    name: sort_tech
    description: placeholder description; linter will ignore this
    title: sorting technology
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000075
    alias: sort_tech
    owner: MimarksC
    domain_of:
    - Checklist
    - Misag
    - Miuvig
    range: string
  source_uvig:
    name: source_uvig
    description: placeholder description; linter will ignore this
    title: source of UViGs
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000035
    alias: source_uvig
    owner: MimarksC
    domain_of:
    - Checklist
    - Miuvig
    range: string
  specific_host:
    name: specific_host
    description: placeholder description; linter will ignore this
    title: host scientific name
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000029
    alias: specific_host
    owner: MimarksC
    domain_of:
    - Agriculture
    - Checklist
    - MigsBa
    - MigsEu
    - MigsPl
    - MigsVi
    - Miuvig
    range: string
    pattern: '[^s\|][^\r\n\t\|]*|NCBITaxon:[0-9]+'
    structured_pattern:
      syntax: '{free_text}|{ncbi_term_id}'
  tax_class:
    name: tax_class
    description: placeholder description; linter will ignore this
    title: taxonomic classification
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000064
    alias: tax_class
    owner: MimarksC
    domain_of:
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - Mims
    - Misag
    - Miuvig
    range: string
    pattern: '[^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{free_text}'
  tax_ident:
    name: tax_ident
    description: placeholder description; linter will ignore this
    title: taxonomic identity marker
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000053
    alias: tax_ident
    owner: MimarksC
    domain_of:
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - Misag
    - Miuvig
    range: string
  trna_ext_software:
    name: trna_ext_software
    description: placeholder description; linter will ignore this
    title: tRNA extraction software
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000068
    alias: trna_ext_software
    owner: MimarksC
    domain_of:
    - Checklist
    - Mimag
    - Misag
    - Miuvig
    range: string
    pattern: '[^s\|][^\r\n\t\|]*;[^s\|][^\r\n\t\|]*;[^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{software};{version};{parameters}'
  trnas:
    name: trnas
    description: placeholder description; linter will ignore this
    title: number of standard tRNAs extracted
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000067
    alias: trnas
    owner: MimarksC
    domain_of:
    - Checklist
    - Mimag
    - Misag
    - Miuvig
    range: integer
    minimum_value: 0
    maximum_value: 21
  vir_ident_software:
    name: vir_ident_software
    description: placeholder description; linter will ignore this
    title: viral identification software
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000081
    alias: vir_ident_software
    owner: MimarksC
    domain_of:
    - Checklist
    - Miuvig
    range: string
    pattern: '[^s\|][^\r\n\t\|]*;[^s\|][^\r\n\t\|]*;[^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{software};{version};{parameters}'
  virus_enrich_appr:
    name: virus_enrich_appr
    description: placeholder description; linter will ignore this
    title: virus enrichment approach
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000036
    alias: virus_enrich_appr
    owner: MimarksC
    domain_of:
    - Checklist
    - MigsVi
    - Miuvig
    range: string
  wga_amp_appr:
    name: wga_amp_appr
    description: placeholder description; linter will ignore this
    title: WGA amplification approach
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000055
    alias: wga_amp_appr
    owner: MimarksC
    domain_of:
    - Checklist
    - Misag
    - Miuvig
    range: string
  wga_amp_kit:
    name: wga_amp_kit
    description: placeholder description; linter will ignore this
    title: WGA amplification kit
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000006
    alias: wga_amp_kit
    owner: MimarksC
    domain_of:
    - Checklist
    - Misag
    - Miuvig
    range: string
    pattern: '[^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{free_text}'
class_uri: MIXS:0010009