Class: MigsBa
placeholder description; linter will ignore this
URI: MIXS:0010003
classDiagram
class MigsBa
Checklist <|-- MigsBa
MigsBa <|-- MigsBaPlantAssociated
MigsBa <|-- MigsBaSediment
MigsBa <|-- MigsBaSoil
MigsBa <|-- MigsBaWater
MigsBa : adapters
MigsBa : alt
MigsBa : annot
MigsBa : assembly_name
MigsBa : assembly_qual
MigsBa --|> ASSEMBLY_QUAL_ENUM : assembly_qual
MigsBa : assembly_software
MigsBa : bin_param
MigsBa : bin_software
MigsBa : biotic_relationship
MigsBa --|> BIOTIC_RELATIONSHIP_ENUM : biotic_relationship
MigsBa : chimera_check
MigsBa : collection_date
MigsBa : compl_appr
MigsBa : compl_score
MigsBa : compl_software
MigsBa : contam_score
MigsBa : contam_screen_input
MigsBa : contam_screen_param
MigsBa : decontam_software
MigsBa : detec_type
MigsBa : elev
MigsBa : encoded_traits
MigsBa : env_broad_scale
MigsBa : env_local_scale
MigsBa : env_medium
MigsBa : estimated_size
MigsBa : experimental_factor
MigsBa : extrachrom_elements
MigsBa : feat_pred
MigsBa : geo_loc_name
MigsBa : host_disease_stat
MigsBa : host_pred_appr
MigsBa : host_pred_est_acc
MigsBa : host_spec_range
MigsBa : isol_growth_condt
MigsBa : lat_lon
MigsBa : lib_layout
MigsBa --|> LIB_LAYOUT_ENUM : lib_layout
MigsBa : lib_reads_seqd
MigsBa : lib_screen
MigsBa : lib_size
MigsBa : lib_vector
MigsBa : mag_cov_software
MigsBa : mid
MigsBa : neg_cont_type
MigsBa --|> NEG_CONT_TYPE_ENUM : neg_cont_type
MigsBa : nucl_acid_amp
MigsBa : nucl_acid_ext
MigsBa : num_replicons
MigsBa : number_contig
MigsBa : otu_class_appr
MigsBa : otu_db
MigsBa : otu_seq_comp_appr
MigsBa : pathogenicity
MigsBa : pcr_cond
MigsBa : pcr_primers
MigsBa : ploidy
MigsBa : pos_cont_type
MigsBa : pred_genome_struc
MigsBa : pred_genome_type
MigsBa : project_name
MigsBa : propagation
MigsBa : reassembly_bin
MigsBa : ref_biomaterial
MigsBa : ref_db
MigsBa : rel_to_oxygen
MigsBa : samp_mat_process
MigsBa : samp_size
MigsBa : samp_taxon_id
MigsBa : samp_vol_we_dna_ext
MigsBa : seq_meth
MigsBa : seq_quality_check
MigsBa : sim_search_meth
MigsBa : single_cell_lysis_appr
MigsBa : single_cell_lysis_prot
MigsBa : size_frac
MigsBa : sop
MigsBa : sort_tech
MigsBa : source_mat_id
MigsBa : source_uvig
MigsBa : specific_host
MigsBa : subspecf_gen_lin
MigsBa : target_gene
MigsBa : target_subfragment
MigsBa : tax_class
MigsBa : tax_ident
MigsBa : temp
MigsBa : trna_ext_software
MigsBa : trnas
MigsBa : trophic_level
MigsBa --|> TROPHIC_LEVEL_ENUM : trophic_level
MigsBa : vir_ident_software
MigsBa : virus_enrich_appr
MigsBa : wga_amp_appr
MigsBa : wga_amp_kit
Inheritance
- Checklist
- MigsBa
Slots
| Name | Cardinality and Range | Description | Inheritance |
|---|---|---|---|
| rel_to_oxygen | 0..1 recommended String |
placeholder description; linter will ignore this | direct |
| adapters | 0..1 recommended String |
placeholder description; linter will ignore this | direct |
| annot | 0..1 recommended String |
placeholder description; linter will ignore this | direct |
| assembly_name | 0..1 recommended String |
placeholder description; linter will ignore this | direct |
| neg_cont_type | 0..1 recommended NEGCONTTYPEENUM |
placeholder description; linter will ignore this | direct |
| nucl_acid_amp | 0..1 recommended String |
placeholder description; linter will ignore this | direct |
| nucl_acid_ext | 0..1 recommended String |
placeholder description; linter will ignore this | direct |
| pathogenicity | 0..1 recommended String |
placeholder description; linter will ignore this | direct |
| pos_cont_type | 0..1 recommended String |
placeholder description; linter will ignore this | direct |
| sop | 0..1 recommended String |
placeholder description; linter will ignore this | direct |
| source_mat_id | 0..1 recommended String |
placeholder description; linter will ignore this | direct |
| subspecf_gen_lin | 0..1 recommended String |
placeholder description; linter will ignore this | direct |
| tax_ident | 0..1 recommended String |
placeholder description; linter will ignore this | direct |
| trophic_level | 0..1 recommended TROPHICLEVELENUM |
placeholder description; linter will ignore this | direct |
| biotic_relationship | 0..1 recommended BIOTICRELATIONSHIPENUM |
placeholder description; linter will ignore this | direct |
| extrachrom_elements | 0..1 recommended Integer |
placeholder description; linter will ignore this | direct |
| host_disease_stat | 0..1 recommended String |
placeholder description; linter will ignore this | direct |
| specific_host | 0..1 recommended String |
placeholder description; linter will ignore this | direct |
| alt | 0..1 recommended String |
placeholder description; linter will ignore this | direct |
| elev | 0..1 recommended String |
placeholder description; linter will ignore this | direct |
| temp | 0..1 recommended String |
placeholder description; linter will ignore this | direct |
| encoded_traits | 0..1 String |
placeholder description; linter will ignore this | direct |
| compl_score | 0..1 String |
placeholder description; linter will ignore this | direct |
| compl_software | 0..1 String |
placeholder description; linter will ignore this | direct |
| estimated_size | 0..1 String |
placeholder description; linter will ignore this | direct |
| experimental_factor | 0..1 String |
placeholder description; linter will ignore this | direct |
| feat_pred | 0..1 String |
placeholder description; linter will ignore this | direct |
| host_spec_range | 0..1 String |
placeholder description; linter will ignore this | direct |
| lib_layout | 0..1 LIBLAYOUTENUM |
placeholder description; linter will ignore this | direct |
| lib_reads_seqd | 0..1 Integer |
placeholder description; linter will ignore this | direct |
| lib_screen | 0..1 String |
placeholder description; linter will ignore this | direct |
| lib_size | 0..1 Integer |
placeholder description; linter will ignore this | direct |
| lib_vector | 0..1 String |
placeholder description; linter will ignore this | direct |
| ref_db | 0..1 String |
placeholder description; linter will ignore this | direct |
| samp_mat_process | 0..1 String |
placeholder description; linter will ignore this | direct |
| samp_size | 0..1 String |
placeholder description; linter will ignore this | direct |
| samp_vol_we_dna_ext | 0..1 String |
placeholder description; linter will ignore this | direct |
| sim_search_meth | 0..1 String |
placeholder description; linter will ignore this | direct |
| tax_class | 0..1 String |
placeholder description; linter will ignore this | direct |
| assembly_qual | 1..1 ASSEMBLYQUALENUM |
placeholder description; linter will ignore this | direct |
| assembly_software | 1..1 String |
placeholder description; linter will ignore this | direct |
| collection_date | 1..1 String |
placeholder description; linter will ignore this | direct |
| env_broad_scale | 1..1 String |
placeholder description; linter will ignore this | direct |
| env_local_scale | 1..1 String |
placeholder description; linter will ignore this | direct |
| env_medium | 1..1 String |
placeholder description; linter will ignore this | direct |
| geo_loc_name | 1..1 String |
placeholder description; linter will ignore this | direct |
| isol_growth_condt | 1..1 String |
placeholder description; linter will ignore this | direct |
| lat_lon | 1..1 String |
placeholder description; linter will ignore this | direct |
| number_contig | 1..1 Integer |
placeholder description; linter will ignore this | direct |
| project_name | 1..1 String |
placeholder description; linter will ignore this | direct |
| samp_taxon_id | 1..1 String |
placeholder description; linter will ignore this | direct |
| seq_meth | 1..1 String |
placeholder description; linter will ignore this | direct |
| num_replicons | 1..1 Integer |
placeholder description; linter will ignore this | direct |
| ref_biomaterial | 1..1 String |
placeholder description; linter will ignore this | direct |
| bin_param | 0..1 String |
placeholder description; linter will ignore this | Checklist |
| bin_software | 0..1 String |
placeholder description; linter will ignore this | Checklist |
| chimera_check | 0..1 String |
placeholder description; linter will ignore this | Checklist |
| compl_appr | 0..1 String |
placeholder description; linter will ignore this | Checklist |
| contam_score | 0..1 String |
placeholder description; linter will ignore this | Checklist |
| contam_screen_input | 0..1 String |
placeholder description; linter will ignore this | Checklist |
| contam_screen_param | 0..1 String |
placeholder description; linter will ignore this | Checklist |
| decontam_software | 0..1 String |
placeholder description; linter will ignore this | Checklist |
| detec_type | 0..1 String |
placeholder description; linter will ignore this | Checklist |
| host_pred_appr | 0..1 String |
placeholder description; linter will ignore this | Checklist |
| host_pred_est_acc | 0..1 String |
placeholder description; linter will ignore this | Checklist |
| mag_cov_software | 0..1 String |
placeholder description; linter will ignore this | Checklist |
| mid | 0..1 String |
placeholder description; linter will ignore this | Checklist |
| otu_class_appr | 0..1 String |
placeholder description; linter will ignore this | Checklist |
| otu_db | 0..1 String |
placeholder description; linter will ignore this | Checklist |
| otu_seq_comp_appr | 0..1 String |
placeholder description; linter will ignore this | Checklist |
| pcr_cond | 0..1 String |
placeholder description; linter will ignore this | Checklist |
| pcr_primers | 0..1 String |
placeholder description; linter will ignore this | Checklist |
| ploidy | 0..1 String |
placeholder description; linter will ignore this | Checklist |
| pred_genome_struc | 0..1 String |
placeholder description; linter will ignore this | Checklist |
| pred_genome_type | 0..1 String |
placeholder description; linter will ignore this | Checklist |
| propagation | 0..1 String |
placeholder description; linter will ignore this | Checklist |
| reassembly_bin | 0..1 Boolean |
placeholder description; linter will ignore this | Checklist |
| seq_quality_check | 0..1 String |
placeholder description; linter will ignore this | Checklist |
| single_cell_lysis_appr | 0..1 String |
Checklist | |
| single_cell_lysis_prot | 0..1 String |
Checklist | |
| size_frac | 0..1 String |
placeholder description; linter will ignore this | Checklist |
| sort_tech | 0..1 String |
placeholder description; linter will ignore this | Checklist |
| source_uvig | 0..1 String |
placeholder description; linter will ignore this | Checklist |
| target_gene | 0..1 String |
placeholder description; linter will ignore this | Checklist |
| target_subfragment | 0..1 String |
placeholder description; linter will ignore this | Checklist |
| trna_ext_software | 0..1 String |
placeholder description; linter will ignore this | Checklist |
| trnas | 0..1 Integer |
placeholder description; linter will ignore this | Checklist |
| vir_ident_software | 0..1 String |
placeholder description; linter will ignore this | Checklist |
| virus_enrich_appr | 0..1 String |
placeholder description; linter will ignore this | Checklist |
| wga_amp_appr | 0..1 String |
placeholder description; linter will ignore this | Checklist |
| wga_amp_kit | 0..1 String |
placeholder description; linter will ignore this | Checklist |
Mixin Usage
| mixed into | description |
|---|---|
| MigsBaPlantAssociated | placeholder description; linter will ignore this |
| MigsBaSediment | placeholder description; linter will ignore this |
| MigsBaSoil | placeholder description; linter will ignore this |
| MigsBaWater | placeholder description; linter will ignore this |
Usages
| used by | used in | type | used |
|---|---|---|---|
| Database | migs_ba_set | range | MigsBa |
Identifier and Mapping Information
Schema Source
- from schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
Mappings
| Mapping Type | Mapped Value |
|---|---|
| self | MIXS:0010003 |
| native | MIXS:MigsBa |
LinkML Source
Direct
name: MigsBa
description: placeholder description; linter will ignore this
title: migs_ba
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
is_a: Checklist
mixin: true
slots:
- rel_to_oxygen
- adapters
- annot
- assembly_name
- neg_cont_type
- nucl_acid_amp
- nucl_acid_ext
- pathogenicity
- pos_cont_type
- sop
- source_mat_id
- subspecf_gen_lin
- tax_ident
- trophic_level
- biotic_relationship
- extrachrom_elements
- host_disease_stat
- specific_host
- alt
- elev
- temp
- encoded_traits
- compl_score
- compl_software
- estimated_size
- experimental_factor
- feat_pred
- host_spec_range
- lib_layout
- lib_reads_seqd
- lib_screen
- lib_size
- lib_vector
- ref_db
- samp_mat_process
- samp_size
- samp_vol_we_dna_ext
- sim_search_meth
- tax_class
- assembly_qual
- assembly_software
- collection_date
- env_broad_scale
- env_local_scale
- env_medium
- geo_loc_name
- isol_growth_condt
- lat_lon
- number_contig
- project_name
- samp_taxon_id
- seq_meth
- num_replicons
- ref_biomaterial
slot_usage:
adapters:
name: adapters
domain_of:
- Agriculture
- Checklist
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksS
- Mims
- Misag
- Miuvig
recommended: true
alt:
name: alt
domain_of:
- Air
- Checklist
- HostAssociated
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- MiscellaneousNaturalOrArtificialEnvironment
- Miuvig
- SymbiontAssociated
recommended: true
annot:
name: annot
domain_of:
- Agriculture
- Checklist
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- Mims
- Misag
- Miuvig
recommended: true
assembly_name:
name: assembly_name
domain_of:
- Agriculture
- Checklist
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- Mims
- Misag
- Miuvig
recommended: true
assembly_qual:
name: assembly_qual
domain_of:
- Agriculture
- Checklist
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- Mims
- Misag
- Miuvig
required: true
assembly_software:
name: assembly_software
domain_of:
- Agriculture
- Checklist
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksS
- Mims
- Misag
- Miuvig
required: true
biotic_relationship:
name: biotic_relationship
domain_of:
- Agriculture
- Checklist
- MigsBa
- MigsEu
- MigsVi
- MimarksC
- Miuvig
recommended: true
collection_date:
name: collection_date
domain_of:
- Checklist
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- Miuvig
- SymbiontAssociated
required: true
compl_score:
name: compl_score
domain_of:
- Checklist
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- Misag
- Miuvig
compl_software:
name: compl_software
domain_of:
- Checklist
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- Misag
- Miuvig
elev:
name: elev
domain_of:
- Agriculture
- Air
- Checklist
- HostAssociated
- HydrocarbonResourcesCores
- MicrobialMatBiofilm
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- MiscellaneousNaturalOrArtificialEnvironment
- Miuvig
- PlantAssociated
- Sediment
- Soil
- SymbiontAssociated
- Water
recommended: true
encoded_traits:
name: encoded_traits
domain_of:
- Checklist
- MigsBa
- MigsPl
- MigsVi
env_broad_scale:
name: env_broad_scale
domain_of:
- Checklist
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- Miuvig
- SymbiontAssociated
required: true
env_local_scale:
name: env_local_scale
domain_of:
- Checklist
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- Miuvig
- SymbiontAssociated
required: true
env_medium:
name: env_medium
domain_of:
- Checklist
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- Miuvig
- SymbiontAssociated
required: true
estimated_size:
name: estimated_size
domain_of:
- Checklist
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Miuvig
experimental_factor:
name: experimental_factor
domain_of:
- Checklist
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
- FoodHumanFoods
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- Miuvig
extrachrom_elements:
name: extrachrom_elements
domain_of:
- Checklist
- MigsBa
- MigsEu
- MigsOrg
- MimarksC
recommended: true
feat_pred:
name: feat_pred
domain_of:
- Checklist
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- Mims
- Misag
- Miuvig
geo_loc_name:
name: geo_loc_name
domain_of:
- Checklist
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- Miuvig
- SymbiontAssociated
required: true
host_disease_stat:
name: host_disease_stat
domain_of:
- Agriculture
- Checklist
- FoodFarmEnvironment
- HostAssociated
- HumanAssociated
- HumanGut
- HumanOral
- HumanSkin
- HumanVaginal
- MigsBa
- MigsEu
- MigsVi
- Miuvig
- PlantAssociated
recommended: true
host_spec_range:
name: host_spec_range
domain_of:
- Agriculture
- Checklist
- MigsBa
- MigsEu
- MigsPl
- MigsVi
- Miuvig
isol_growth_condt:
name: isol_growth_condt
domain_of:
- Agriculture
- Checklist
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- MimarksC
required: true
lat_lon:
name: lat_lon
domain_of:
- Checklist
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- Miuvig
- SymbiontAssociated
required: true
lib_layout:
name: lib_layout
domain_of:
- Agriculture
- Checklist
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksS
- Mims
- Misag
- Miuvig
lib_reads_seqd:
name: lib_reads_seqd
domain_of:
- Agriculture
- Checklist
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksS
- Mims
- Misag
- Miuvig
lib_screen:
name: lib_screen
domain_of:
- Agriculture
- Checklist
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksS
- Mims
- Misag
- Miuvig
lib_size:
name: lib_size
domain_of:
- Agriculture
- Checklist
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksS
- Mims
- Misag
- Miuvig
lib_vector:
name: lib_vector
domain_of:
- Agriculture
- Checklist
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksS
- Mims
- Misag
- Miuvig
neg_cont_type:
name: neg_cont_type
domain_of:
- Checklist
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- Miuvig
recommended: true
nucl_acid_amp:
name: nucl_acid_amp
domain_of:
- Agriculture
- Checklist
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- Miuvig
recommended: true
nucl_acid_ext:
name: nucl_acid_ext
domain_of:
- Agriculture
- Checklist
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- Miuvig
recommended: true
num_replicons:
name: num_replicons
domain_of:
- Checklist
- MigsBa
- MigsEu
- MigsVi
required: true
number_contig:
name: number_contig
domain_of:
- Checklist
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- Mims
- Misag
- Miuvig
required: true
pathogenicity:
name: pathogenicity
domain_of:
- Agriculture
- Checklist
- MigsBa
- MigsEu
- MigsVi
- Miuvig
recommended: true
pos_cont_type:
name: pos_cont_type
domain_of:
- Checklist
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- Miuvig
recommended: true
project_name:
name: project_name
domain_of:
- Air
- BuiltEnvironment
- Checklist
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
- HostAssociated
- HumanAssociated
- HumanGut
- HumanOral
- HumanSkin
- HumanVaginal
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- MicrobialMatBiofilm
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- MiscellaneousNaturalOrArtificialEnvironment
- Miuvig
- PlantAssociated
- Sediment
- Soil
- SymbiontAssociated
- WastewaterSludge
- Water
required: true
ref_biomaterial:
name: ref_biomaterial
domain_of:
- Checklist
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- Mims
- Misag
- Miuvig
required: true
ref_db:
name: ref_db
domain_of:
- Checklist
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- Mims
- Misag
- Miuvig
rel_to_oxygen:
name: rel_to_oxygen
domain_of:
- Checklist
- MigsBa
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
recommended: true
samp_mat_process:
name: samp_mat_process
domain_of:
- Agriculture
- Checklist
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- Miuvig
samp_size:
name: samp_size
domain_of:
- Agriculture
- Checklist
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- Miuvig
samp_taxon_id:
name: samp_taxon_id
domain_of:
- Checklist
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- Miuvig
required: true
samp_vol_we_dna_ext:
name: samp_vol_we_dna_ext
domain_of:
- Agriculture
- Air
- Checklist
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
- HostAssociated
- HumanAssociated
- HumanGut
- HumanOral
- HumanSkin
- HumanVaginal
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- MicrobialMatBiofilm
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- MiscellaneousNaturalOrArtificialEnvironment
- Miuvig
- PlantAssociated
- Sediment
- Soil
- SymbiontAssociated
- WastewaterSludge
- Water
seq_meth:
name: seq_meth
domain_of:
- Agriculture
- Checklist
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- Miuvig
required: true
sim_search_meth:
name: sim_search_meth
domain_of:
- Checklist
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- Mims
- Misag
- Miuvig
sop:
name: sop
domain_of:
- Agriculture
- Checklist
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- Miuvig
recommended: true
source_mat_id:
name: source_mat_id
domain_of:
- Agriculture
- Checklist
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- Miuvig
- SymbiontAssociated
recommended: true
specific_host:
name: specific_host
domain_of:
- Agriculture
- Checklist
- MigsBa
- MigsEu
- MigsPl
- MigsVi
- Miuvig
recommended: true
subspecf_gen_lin:
name: subspecf_gen_lin
domain_of:
- Checklist
- FoodFoodProductionFacility
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- MimarksC
recommended: true
tax_class:
name: tax_class
domain_of:
- Checklist
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- Mims
- Misag
- Miuvig
tax_ident:
name: tax_ident
domain_of:
- Checklist
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- Misag
- Miuvig
recommended: true
temp:
name: temp
domain_of:
- Agriculture
- Air
- Checklist
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodHumanFoods
- HostAssociated
- HumanAssociated
- HumanGut
- HumanOral
- HumanSkin
- HumanVaginal
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- MicrobialMatBiofilm
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- MiscellaneousNaturalOrArtificialEnvironment
- Miuvig
- PlantAssociated
- Sediment
- Soil
- SymbiontAssociated
- WastewaterSludge
- Water
recommended: true
trophic_level:
name: trophic_level
domain_of:
- Agriculture
- Checklist
- MigsBa
- MigsEu
- MimarksC
recommended: true
class_uri: MIXS:0010003
Induced
name: MigsBa
description: placeholder description; linter will ignore this
title: migs_ba
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
is_a: Checklist
mixin: true
slot_usage:
adapters:
name: adapters
domain_of:
- Agriculture
- Checklist
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksS
- Mims
- Misag
- Miuvig
recommended: true
alt:
name: alt
domain_of:
- Air
- Checklist
- HostAssociated
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- MiscellaneousNaturalOrArtificialEnvironment
- Miuvig
- SymbiontAssociated
recommended: true
annot:
name: annot
domain_of:
- Agriculture
- Checklist
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- Mims
- Misag
- Miuvig
recommended: true
assembly_name:
name: assembly_name
domain_of:
- Agriculture
- Checklist
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- Mims
- Misag
- Miuvig
recommended: true
assembly_qual:
name: assembly_qual
domain_of:
- Agriculture
- Checklist
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- Mims
- Misag
- Miuvig
required: true
assembly_software:
name: assembly_software
domain_of:
- Agriculture
- Checklist
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksS
- Mims
- Misag
- Miuvig
required: true
biotic_relationship:
name: biotic_relationship
domain_of:
- Agriculture
- Checklist
- MigsBa
- MigsEu
- MigsVi
- MimarksC
- Miuvig
recommended: true
collection_date:
name: collection_date
domain_of:
- Checklist
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- Miuvig
- SymbiontAssociated
required: true
compl_score:
name: compl_score
domain_of:
- Checklist
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- Misag
- Miuvig
compl_software:
name: compl_software
domain_of:
- Checklist
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- Misag
- Miuvig
elev:
name: elev
domain_of:
- Agriculture
- Air
- Checklist
- HostAssociated
- HydrocarbonResourcesCores
- MicrobialMatBiofilm
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- MiscellaneousNaturalOrArtificialEnvironment
- Miuvig
- PlantAssociated
- Sediment
- Soil
- SymbiontAssociated
- Water
recommended: true
encoded_traits:
name: encoded_traits
domain_of:
- Checklist
- MigsBa
- MigsPl
- MigsVi
env_broad_scale:
name: env_broad_scale
domain_of:
- Checklist
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- Miuvig
- SymbiontAssociated
required: true
env_local_scale:
name: env_local_scale
domain_of:
- Checklist
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- Miuvig
- SymbiontAssociated
required: true
env_medium:
name: env_medium
domain_of:
- Checklist
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- Miuvig
- SymbiontAssociated
required: true
estimated_size:
name: estimated_size
domain_of:
- Checklist
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Miuvig
experimental_factor:
name: experimental_factor
domain_of:
- Checklist
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
- FoodHumanFoods
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- Miuvig
extrachrom_elements:
name: extrachrom_elements
domain_of:
- Checklist
- MigsBa
- MigsEu
- MigsOrg
- MimarksC
recommended: true
feat_pred:
name: feat_pred
domain_of:
- Checklist
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- Mims
- Misag
- Miuvig
geo_loc_name:
name: geo_loc_name
domain_of:
- Checklist
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- Miuvig
- SymbiontAssociated
required: true
host_disease_stat:
name: host_disease_stat
domain_of:
- Agriculture
- Checklist
- FoodFarmEnvironment
- HostAssociated
- HumanAssociated
- HumanGut
- HumanOral
- HumanSkin
- HumanVaginal
- MigsBa
- MigsEu
- MigsVi
- Miuvig
- PlantAssociated
recommended: true
host_spec_range:
name: host_spec_range
domain_of:
- Agriculture
- Checklist
- MigsBa
- MigsEu
- MigsPl
- MigsVi
- Miuvig
isol_growth_condt:
name: isol_growth_condt
domain_of:
- Agriculture
- Checklist
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- MimarksC
required: true
lat_lon:
name: lat_lon
domain_of:
- Checklist
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- Miuvig
- SymbiontAssociated
required: true
lib_layout:
name: lib_layout
domain_of:
- Agriculture
- Checklist
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksS
- Mims
- Misag
- Miuvig
lib_reads_seqd:
name: lib_reads_seqd
domain_of:
- Agriculture
- Checklist
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksS
- Mims
- Misag
- Miuvig
lib_screen:
name: lib_screen
domain_of:
- Agriculture
- Checklist
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksS
- Mims
- Misag
- Miuvig
lib_size:
name: lib_size
domain_of:
- Agriculture
- Checklist
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksS
- Mims
- Misag
- Miuvig
lib_vector:
name: lib_vector
domain_of:
- Agriculture
- Checklist
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksS
- Mims
- Misag
- Miuvig
neg_cont_type:
name: neg_cont_type
domain_of:
- Checklist
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- Miuvig
recommended: true
nucl_acid_amp:
name: nucl_acid_amp
domain_of:
- Agriculture
- Checklist
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- Miuvig
recommended: true
nucl_acid_ext:
name: nucl_acid_ext
domain_of:
- Agriculture
- Checklist
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- Miuvig
recommended: true
num_replicons:
name: num_replicons
domain_of:
- Checklist
- MigsBa
- MigsEu
- MigsVi
required: true
number_contig:
name: number_contig
domain_of:
- Checklist
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- Mims
- Misag
- Miuvig
required: true
pathogenicity:
name: pathogenicity
domain_of:
- Agriculture
- Checklist
- MigsBa
- MigsEu
- MigsVi
- Miuvig
recommended: true
pos_cont_type:
name: pos_cont_type
domain_of:
- Checklist
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- Miuvig
recommended: true
project_name:
name: project_name
domain_of:
- Air
- BuiltEnvironment
- Checklist
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
- HostAssociated
- HumanAssociated
- HumanGut
- HumanOral
- HumanSkin
- HumanVaginal
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- MicrobialMatBiofilm
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- MiscellaneousNaturalOrArtificialEnvironment
- Miuvig
- PlantAssociated
- Sediment
- Soil
- SymbiontAssociated
- WastewaterSludge
- Water
required: true
ref_biomaterial:
name: ref_biomaterial
domain_of:
- Checklist
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- Mims
- Misag
- Miuvig
required: true
ref_db:
name: ref_db
domain_of:
- Checklist
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- Mims
- Misag
- Miuvig
rel_to_oxygen:
name: rel_to_oxygen
domain_of:
- Checklist
- MigsBa
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
recommended: true
samp_mat_process:
name: samp_mat_process
domain_of:
- Agriculture
- Checklist
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- Miuvig
samp_size:
name: samp_size
domain_of:
- Agriculture
- Checklist
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- Miuvig
samp_taxon_id:
name: samp_taxon_id
domain_of:
- Checklist
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- Miuvig
required: true
samp_vol_we_dna_ext:
name: samp_vol_we_dna_ext
domain_of:
- Agriculture
- Air
- Checklist
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
- HostAssociated
- HumanAssociated
- HumanGut
- HumanOral
- HumanSkin
- HumanVaginal
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- MicrobialMatBiofilm
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- MiscellaneousNaturalOrArtificialEnvironment
- Miuvig
- PlantAssociated
- Sediment
- Soil
- SymbiontAssociated
- WastewaterSludge
- Water
seq_meth:
name: seq_meth
domain_of:
- Agriculture
- Checklist
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- Miuvig
required: true
sim_search_meth:
name: sim_search_meth
domain_of:
- Checklist
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- Mims
- Misag
- Miuvig
sop:
name: sop
domain_of:
- Agriculture
- Checklist
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- Miuvig
recommended: true
source_mat_id:
name: source_mat_id
domain_of:
- Agriculture
- Checklist
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- Miuvig
- SymbiontAssociated
recommended: true
specific_host:
name: specific_host
domain_of:
- Agriculture
- Checklist
- MigsBa
- MigsEu
- MigsPl
- MigsVi
- Miuvig
recommended: true
subspecf_gen_lin:
name: subspecf_gen_lin
domain_of:
- Checklist
- FoodFoodProductionFacility
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- MimarksC
recommended: true
tax_class:
name: tax_class
domain_of:
- Checklist
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- Mims
- Misag
- Miuvig
tax_ident:
name: tax_ident
domain_of:
- Checklist
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- Misag
- Miuvig
recommended: true
temp:
name: temp
domain_of:
- Agriculture
- Air
- Checklist
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodHumanFoods
- HostAssociated
- HumanAssociated
- HumanGut
- HumanOral
- HumanSkin
- HumanVaginal
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- MicrobialMatBiofilm
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- MiscellaneousNaturalOrArtificialEnvironment
- Miuvig
- PlantAssociated
- Sediment
- Soil
- SymbiontAssociated
- WastewaterSludge
- Water
recommended: true
trophic_level:
name: trophic_level
domain_of:
- Agriculture
- Checklist
- MigsBa
- MigsEu
- MimarksC
recommended: true
attributes:
rel_to_oxygen:
name: rel_to_oxygen
description: placeholder description; linter will ignore this
title: relationship to oxygen
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000015
alias: rel_to_oxygen
owner: MigsBa
domain_of:
- Checklist
- MigsBa
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
range: string
recommended: true
adapters:
name: adapters
description: placeholder description; linter will ignore this
title: adapters
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000048
alias: adapters
owner: MigsBa
domain_of:
- Agriculture
- Checklist
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksS
- Mims
- Misag
- Miuvig
range: string
recommended: true
pattern: '[ACGT]+;[ACGT]+'
structured_pattern:
syntax: '{dna};{dna}'
annot:
name: annot
description: placeholder description; linter will ignore this
title: annotation
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000059
alias: annot
owner: MigsBa
domain_of:
- Agriculture
- Checklist
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- Mims
- Misag
- Miuvig
range: string
recommended: true
pattern: '[^s\|][^\r\n\t\|]*'
structured_pattern:
syntax: '{free_text}'
assembly_name:
name: assembly_name
description: placeholder description; linter will ignore this
title: assembly name
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000057
alias: assembly_name
owner: MigsBa
domain_of:
- Agriculture
- Checklist
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- Mims
- Misag
- Miuvig
range: string
recommended: true
pattern: '[^s\|][^\r\n\t\|]* [^s\|][^\r\n\t\|]*'
structured_pattern:
syntax: '{free_text} {free_text}'
neg_cont_type:
name: neg_cont_type
description: placeholder description; linter will ignore this
title: negative control type
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0001321
alias: neg_cont_type
owner: MigsBa
domain_of:
- Checklist
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- Miuvig
range: NEG_CONT_TYPE_ENUM
recommended: true
nucl_acid_amp:
name: nucl_acid_amp
description: placeholder description; linter will ignore this
title: nucleic acid amplification
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000038
alias: nucl_acid_amp
owner: MigsBa
domain_of:
- Agriculture
- Checklist
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- Miuvig
range: string
recommended: true
pattern: (10.\d{4,9}/[-._;()/:a-zA-Z0-9]+)|(PMID:(\d{7,8}))|((?:https?://)?(?:www\.)?[\w-]+(?:\.[\w-]+)+[\w.,@?^=%&:/~+#-]*[\w@?^=%&/~+#-])
structured_pattern:
syntax: ({DOI})|({PMID})|({URL})
nucl_acid_ext:
name: nucl_acid_ext
description: placeholder description; linter will ignore this
title: nucleic acid extraction
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000037
alias: nucl_acid_ext
owner: MigsBa
domain_of:
- Agriculture
- Checklist
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- Miuvig
range: string
recommended: true
pattern: (10.\d{4,9}/[-._;()/:a-zA-Z0-9]+)|(PMID:(\d{7,8}))|((?:https?://)?(?:www\.)?[\w-]+(?:\.[\w-]+)+[\w.,@?^=%&:/~+#-]*[\w@?^=%&/~+#-])
structured_pattern:
syntax: ({DOI})|({PMID})|({URL})
pathogenicity:
name: pathogenicity
description: placeholder description; linter will ignore this
title: known pathogenicity
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000027
alias: pathogenicity
owner: MigsBa
domain_of:
- Agriculture
- Checklist
- MigsBa
- MigsEu
- MigsVi
- Miuvig
range: string
recommended: true
pattern: '[^s\|][^\r\n\t\|]*'
structured_pattern:
syntax: '{free_text}'
pos_cont_type:
name: pos_cont_type
description: placeholder description; linter will ignore this
title: positive control type
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0001322
alias: pos_cont_type
owner: MigsBa
domain_of:
- Checklist
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- Miuvig
range: string
recommended: true
sop:
name: sop
description: placeholder description; linter will ignore this
title: relevant standard operating procedures
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000090
alias: sop
owner: MigsBa
domain_of:
- Agriculture
- Checklist
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- Miuvig
range: string
recommended: true
pattern: (((10.\d{4,9}/[-._;()/:a-zA-Z0-9]+)|(PMID:(\d{7,8}))|((?:https?://)?(?:www\.)?[\w-]+(?:\.[\w-]+)+[\w.,@?^=%&:/~+#-]*[\w@?^=%&/~+#-]))\|)*(((10.\d{4,9}/[-._;()/:a-zA-Z0-9]+)|(PMID:(\d{7,8}))|((?:https?://)?(?:www\.)?[\w-]+(?:\.[\w-]+)+[\w.,@?^=%&:/~+#-]*[\w@?^=%&/~+#-])))
structured_pattern:
syntax: ((({DOI})|({PMID})|({URL}))\|)*((({DOI})|({PMID})|({URL})))
source_mat_id:
name: source_mat_id
description: placeholder description; linter will ignore this
title: source material identifiers
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000026
alias: source_mat_id
owner: MigsBa
domain_of:
- Agriculture
- Checklist
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- Miuvig
- SymbiontAssociated
range: string
recommended: true
pattern: '[^s\|][^\r\n\t\|]*'
structured_pattern:
syntax: '{free_text}'
subspecf_gen_lin:
name: subspecf_gen_lin
description: placeholder description; linter will ignore this
title: subspecific genetic lineage
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000020
alias: subspecf_gen_lin
owner: MigsBa
domain_of:
- Checklist
- FoodFoodProductionFacility
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- MimarksC
range: string
recommended: true
tax_ident:
name: tax_ident
description: placeholder description; linter will ignore this
title: taxonomic identity marker
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000053
alias: tax_ident
owner: MigsBa
domain_of:
- Checklist
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- Misag
- Miuvig
range: string
recommended: true
trophic_level:
name: trophic_level
description: placeholder description; linter will ignore this
title: trophic level
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000032
alias: trophic_level
owner: MigsBa
domain_of:
- Agriculture
- Checklist
- MigsBa
- MigsEu
- MimarksC
range: TROPHIC_LEVEL_ENUM
recommended: true
biotic_relationship:
name: biotic_relationship
description: placeholder description; linter will ignore this
title: observed biotic relationship
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000028
alias: biotic_relationship
owner: MigsBa
domain_of:
- Agriculture
- Checklist
- MigsBa
- MigsEu
- MigsVi
- MimarksC
- Miuvig
range: BIOTIC_RELATIONSHIP_ENUM
recommended: true
extrachrom_elements:
name: extrachrom_elements
description: placeholder description; linter will ignore this
title: extrachromosomal elements
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000023
alias: extrachrom_elements
owner: MigsBa
domain_of:
- Checklist
- MigsBa
- MigsEu
- MigsOrg
- MimarksC
range: integer
recommended: true
host_disease_stat:
name: host_disease_stat
description: placeholder description; linter will ignore this
title: host disease status
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000031
alias: host_disease_stat
owner: MigsBa
domain_of:
- Agriculture
- Checklist
- FoodFarmEnvironment
- HostAssociated
- HumanAssociated
- HumanGut
- HumanOral
- HumanSkin
- HumanVaginal
- MigsBa
- MigsEu
- MigsVi
- Miuvig
- PlantAssociated
range: string
recommended: true
pattern: ((([^s\|][^\r\n\t\|]* [[a-zA-Z]+:[0-9]+])|[^s\|][^\r\n\t\|]*)\|)*(([^s\|][^\r\n\t\|]*
[[a-zA-Z]+:[0-9]+])|[^s\|][^\r\n\t\|]*)
structured_pattern:
syntax: ((({term_label} [{term_id}])|{free_text})\|)*(({term_label} [{term_id}])|{free_text})
specific_host:
name: specific_host
description: placeholder description; linter will ignore this
title: host scientific name
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000029
alias: specific_host
owner: MigsBa
domain_of:
- Agriculture
- Checklist
- MigsBa
- MigsEu
- MigsPl
- MigsVi
- Miuvig
range: string
recommended: true
pattern: '[^s\|][^\r\n\t\|]*|NCBITaxon:[0-9]+'
structured_pattern:
syntax: '{free_text}|{ncbi_term_id}'
alt:
name: alt
description: placeholder description; linter will ignore this
title: altitude
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000094
alias: alt
owner: MigsBa
domain_of:
- Air
- Checklist
- HostAssociated
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- MiscellaneousNaturalOrArtificialEnvironment
- Miuvig
- SymbiontAssociated
range: string
recommended: true
pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
structured_pattern:
syntax: '{float} {unit}'
elev:
name: elev
description: placeholder description; linter will ignore this
title: elevation
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000093
alias: elev
owner: MigsBa
domain_of:
- Agriculture
- Air
- Checklist
- HostAssociated
- HydrocarbonResourcesCores
- MicrobialMatBiofilm
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- MiscellaneousNaturalOrArtificialEnvironment
- Miuvig
- PlantAssociated
- Sediment
- Soil
- SymbiontAssociated
- Water
range: string
recommended: true
pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
structured_pattern:
syntax: '{float} {unit}'
temp:
name: temp
description: placeholder description; linter will ignore this
title: temperature
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000113
alias: temp
owner: MigsBa
domain_of:
- Agriculture
- Air
- Checklist
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodHumanFoods
- HostAssociated
- HumanAssociated
- HumanGut
- HumanOral
- HumanSkin
- HumanVaginal
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- MicrobialMatBiofilm
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- MiscellaneousNaturalOrArtificialEnvironment
- Miuvig
- PlantAssociated
- Sediment
- Soil
- SymbiontAssociated
- WastewaterSludge
- Water
range: string
recommended: true
pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
structured_pattern:
syntax: '{float} {unit}'
encoded_traits:
name: encoded_traits
description: placeholder description; linter will ignore this
title: encoded traits
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000034
alias: encoded_traits
owner: MigsBa
domain_of:
- Checklist
- MigsBa
- MigsPl
- MigsVi
range: string
pattern: '[^s\|][^\r\n\t\|]*'
structured_pattern:
syntax: '{free_text}'
compl_score:
name: compl_score
description: placeholder description; linter will ignore this
title: completeness score
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000069
alias: compl_score
owner: MigsBa
domain_of:
- Checklist
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- Misag
- Miuvig
range: string
compl_software:
name: compl_software
description: placeholder description; linter will ignore this
title: completeness software
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000070
alias: compl_software
owner: MigsBa
domain_of:
- Checklist
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- Misag
- Miuvig
range: string
pattern: '[^s\|][^\r\n\t\|]*;[^s\|][^\r\n\t\|]*'
structured_pattern:
syntax: '{software};{version}'
estimated_size:
name: estimated_size
description: placeholder description; linter will ignore this
title: estimated size
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000024
alias: estimated_size
owner: MigsBa
domain_of:
- Checklist
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Miuvig
range: string
pattern: '[+-]?[1-9][0-9]* bp'
structured_pattern:
syntax: '{integer} bp'
experimental_factor:
name: experimental_factor
description: placeholder description; linter will ignore this
title: experimental factor
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000008
alias: experimental_factor
owner: MigsBa
domain_of:
- Checklist
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
- FoodHumanFoods
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- Miuvig
range: string
feat_pred:
name: feat_pred
description: placeholder description; linter will ignore this
title: feature prediction
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000061
alias: feat_pred
owner: MigsBa
domain_of:
- Checklist
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- Mims
- Misag
- Miuvig
range: string
pattern: '[^s\|][^\r\n\t\|]*;[^s\|][^\r\n\t\|]*;[^s\|][^\r\n\t\|]*'
structured_pattern:
syntax: '{software};{version};{parameters}'
host_spec_range:
name: host_spec_range
description: placeholder description; linter will ignore this
title: host specificity or range
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000030
alias: host_spec_range
owner: MigsBa
domain_of:
- Agriculture
- Checklist
- MigsBa
- MigsEu
- MigsPl
- MigsVi
- Miuvig
range: string
pattern: ([+-]?[1-9][0-9]*\|)*[+-]?[1-9][0-9]*
structured_pattern:
syntax: ({integer}\|)*{integer}
lib_layout:
name: lib_layout
description: placeholder description; linter will ignore this
title: library layout
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000041
alias: lib_layout
owner: MigsBa
domain_of:
- Agriculture
- Checklist
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksS
- Mims
- Misag
- Miuvig
range: LIB_LAYOUT_ENUM
lib_reads_seqd:
name: lib_reads_seqd
description: placeholder description; linter will ignore this
title: library reads sequenced
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000040
alias: lib_reads_seqd
owner: MigsBa
domain_of:
- Agriculture
- Checklist
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksS
- Mims
- Misag
- Miuvig
range: integer
lib_screen:
name: lib_screen
description: placeholder description; linter will ignore this
title: library screening strategy
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000043
alias: lib_screen
owner: MigsBa
domain_of:
- Agriculture
- Checklist
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksS
- Mims
- Misag
- Miuvig
range: string
pattern: '[^s\|][^\r\n\t\|]*'
structured_pattern:
syntax: '{free_text}'
lib_size:
name: lib_size
description: placeholder description; linter will ignore this
title: library size
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000039
alias: lib_size
owner: MigsBa
domain_of:
- Agriculture
- Checklist
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksS
- Mims
- Misag
- Miuvig
range: integer
lib_vector:
name: lib_vector
description: placeholder description; linter will ignore this
title: library vector
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000042
alias: lib_vector
owner: MigsBa
domain_of:
- Agriculture
- Checklist
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksS
- Mims
- Misag
- Miuvig
range: string
pattern: '[^s\|][^\r\n\t\|]*'
structured_pattern:
syntax: '{free_text}'
ref_db:
name: ref_db
description: placeholder description; linter will ignore this
title: reference database(s)
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000062
alias: ref_db
owner: MigsBa
domain_of:
- Checklist
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- Mims
- Misag
- Miuvig
range: string
pattern: '[^s\|][^\r\n\t\|]+;[^s\|][^\r\n\t\|]*;[^s\|][^\r\n\t\|]*'
structured_pattern:
syntax: '{database};{version};{reference}'
samp_mat_process:
name: samp_mat_process
description: placeholder description; linter will ignore this
title: sample material processing
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000016
alias: samp_mat_process
owner: MigsBa
domain_of:
- Agriculture
- Checklist
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- Miuvig
range: string
pattern: '[^s\|][^\r\n\t\|]*'
structured_pattern:
syntax: '{free_text}'
samp_size:
name: samp_size
description: placeholder description; linter will ignore this
title: amount or size of sample collected
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000001
alias: samp_size
owner: MigsBa
domain_of:
- Agriculture
- Checklist
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- Miuvig
range: string
pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
structured_pattern:
syntax: '{float} {unit}'
samp_vol_we_dna_ext:
name: samp_vol_we_dna_ext
description: placeholder description; linter will ignore this
title: sample volume or weight for DNA extraction
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000111
alias: samp_vol_we_dna_ext
owner: MigsBa
domain_of:
- Agriculture
- Air
- Checklist
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
- HostAssociated
- HumanAssociated
- HumanGut
- HumanOral
- HumanSkin
- HumanVaginal
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- MicrobialMatBiofilm
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- MiscellaneousNaturalOrArtificialEnvironment
- Miuvig
- PlantAssociated
- Sediment
- Soil
- SymbiontAssociated
- WastewaterSludge
- Water
range: string
pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
structured_pattern:
syntax: '{float} {unit}'
sim_search_meth:
name: sim_search_meth
description: placeholder description; linter will ignore this
title: similarity search method
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000063
alias: sim_search_meth
owner: MigsBa
domain_of:
- Checklist
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- Mims
- Misag
- Miuvig
range: string
pattern: '[^s\|][^\r\n\t\|]*;[^s\|][^\r\n\t\|]*;[^s\|][^\r\n\t\|]*'
structured_pattern:
syntax: '{software};{version};{parameters}'
tax_class:
name: tax_class
description: placeholder description; linter will ignore this
title: taxonomic classification
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000064
alias: tax_class
owner: MigsBa
domain_of:
- Checklist
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- Mims
- Misag
- Miuvig
range: string
pattern: '[^s\|][^\r\n\t\|]*'
structured_pattern:
syntax: '{free_text}'
assembly_qual:
name: assembly_qual
description: placeholder description; linter will ignore this
title: assembly quality
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000056
alias: assembly_qual
owner: MigsBa
domain_of:
- Agriculture
- Checklist
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- Mims
- Misag
- Miuvig
range: ASSEMBLY_QUAL_ENUM
required: true
assembly_software:
name: assembly_software
description: placeholder description; linter will ignore this
title: assembly software
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000058
alias: assembly_software
owner: MigsBa
domain_of:
- Agriculture
- Checklist
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksS
- Mims
- Misag
- Miuvig
range: string
required: true
pattern: '[^s\|][^\r\n\t\|]*;[^s\|][^\r\n\t\|]*;[^s\|][^\r\n\t\|]*'
structured_pattern:
syntax: '{software};{version};{parameters}'
collection_date:
name: collection_date
description: placeholder description; linter will ignore this
title: collection date
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000011
alias: collection_date
owner: MigsBa
domain_of:
- Checklist
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- Miuvig
- SymbiontAssociated
range: string
required: true
env_broad_scale:
name: env_broad_scale
description: placeholder description; linter will ignore this
title: broad-scale environmental context
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000012
alias: env_broad_scale
owner: MigsBa
domain_of:
- Checklist
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- Miuvig
- SymbiontAssociated
range: string
required: true
pattern: '[^s\|][^\r\n\t\|]* [[a-zA-Z]+:[0-9]+]'
structured_pattern:
syntax: '{term_label} [{term_id}]'
env_local_scale:
name: env_local_scale
description: placeholder description; linter will ignore this
title: local environmental context
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000013
alias: env_local_scale
owner: MigsBa
domain_of:
- Checklist
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- Miuvig
- SymbiontAssociated
range: string
required: true
pattern: '[^s\|][^\r\n\t\|]* [[a-zA-Z]+:[0-9]+]'
structured_pattern:
syntax: '{term_label} [{term_id}]'
env_medium:
name: env_medium
description: placeholder description; linter will ignore this
title: environmental medium
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000014
alias: env_medium
owner: MigsBa
domain_of:
- Checklist
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- Miuvig
- SymbiontAssociated
range: string
required: true
pattern: '[^s\|][^\r\n\t\|]* [[a-zA-Z]+:[0-9]+]'
structured_pattern:
syntax: '{term_label} [{term_id}]'
geo_loc_name:
name: geo_loc_name
description: placeholder description; linter will ignore this
title: geographic location (country and/or sea,region)
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000010
alias: geo_loc_name
owner: MigsBa
domain_of:
- Checklist
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- Miuvig
- SymbiontAssociated
range: string
required: true
pattern: '[^s\|][^\r\n\t\|]*: [^s\|][^\r\n\t\|]*, [^s\|][^\r\n\t\|]*'
structured_pattern:
syntax: '{term}: {term}, {free_text}'
isol_growth_condt:
name: isol_growth_condt
description: placeholder description; linter will ignore this
title: isolation and growth condition
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000003
alias: isol_growth_condt
owner: MigsBa
domain_of:
- Agriculture
- Checklist
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- MimarksC
range: string
required: true
pattern: (10.\d{4,9}/[-._;()/:a-zA-Z0-9]+)|(PMID:(\d{7,8}))|((?:https?://)?(?:www\.)?[\w-]+(?:\.[\w-]+)+[\w.,@?^=%&:/~+#-]*[\w@?^=%&/~+#-])
structured_pattern:
syntax: ({DOI})|({PMID})|({URL})
lat_lon:
name: lat_lon
description: placeholder description; linter will ignore this
title: geographic location (latitude and longitude)
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000009
alias: lat_lon
owner: MigsBa
domain_of:
- Checklist
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- Miuvig
- SymbiontAssociated
range: string
required: true
pattern: '[-+]?([1-8]?\d(\.\d+)?|90(\.0+)?) [-+]?(180(\.0+)?|((1[0-7]\d)|([1-9]?\d))(\.\d+)?)'
structured_pattern:
syntax: '{lat} {lon}'
number_contig:
name: number_contig
description: placeholder description; linter will ignore this
title: number of contigs
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000060
alias: number_contig
owner: MigsBa
domain_of:
- Checklist
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- Mims
- Misag
- Miuvig
range: integer
required: true
project_name:
name: project_name
description: placeholder description; linter will ignore this
title: project name
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000092
alias: project_name
owner: MigsBa
domain_of:
- Air
- BuiltEnvironment
- Checklist
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
- HostAssociated
- HumanAssociated
- HumanGut
- HumanOral
- HumanSkin
- HumanVaginal
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- MicrobialMatBiofilm
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- MiscellaneousNaturalOrArtificialEnvironment
- Miuvig
- PlantAssociated
- Sediment
- Soil
- SymbiontAssociated
- WastewaterSludge
- Water
range: string
required: true
pattern: '[^s\|][^\r\n\t\|]*'
structured_pattern:
syntax: '{free_text}'
samp_taxon_id:
name: samp_taxon_id
description: placeholder description; linter will ignore this
title: taxonomy ID of DNA sample
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0001320
alias: samp_taxon_id
owner: MigsBa
domain_of:
- Checklist
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- Miuvig
range: string
required: true
pattern: '[^s\|][^\r\n\t\|]* [NCBITaxon:[0-9]+]'
structured_pattern:
syntax: '{term_label} [{ncbi_term_id}]'
seq_meth:
name: seq_meth
description: placeholder description; linter will ignore this
title: sequencing method
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000050
alias: seq_meth
owner: MigsBa
domain_of:
- Agriculture
- Checklist
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- Miuvig
range: string
required: true
num_replicons:
name: num_replicons
description: placeholder description; linter will ignore this
title: number of replicons
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000022
alias: num_replicons
owner: MigsBa
domain_of:
- Checklist
- MigsBa
- MigsEu
- MigsVi
range: integer
required: true
ref_biomaterial:
name: ref_biomaterial
description: placeholder description; linter will ignore this
title: reference for biomaterial
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000025
alias: ref_biomaterial
owner: MigsBa
domain_of:
- Checklist
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- Mims
- Misag
- Miuvig
range: string
required: true
pattern: (10.\d{4,9}/[-._;()/:a-zA-Z0-9]+)|(PMID:(\d{7,8}))|((?:https?://)?(?:www\.)?[\w-]+(?:\.[\w-]+)+[\w.,@?^=%&:/~+#-]*[\w@?^=%&/~+#-])
structured_pattern:
syntax: ({DOI})|({PMID})|({URL})
bin_param:
name: bin_param
description: placeholder description; linter will ignore this
title: binning parameters
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000077
alias: bin_param
owner: MigsBa
domain_of:
- Checklist
- Mimag
- Miuvig
range: string
bin_software:
name: bin_software
description: placeholder description; linter will ignore this
title: binning software
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000078
alias: bin_software
owner: MigsBa
domain_of:
- Checklist
- Mimag
- Miuvig
range: string
chimera_check:
name: chimera_check
description: placeholder description; linter will ignore this
title: chimera check software
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000052
alias: chimera_check
owner: MigsBa
domain_of:
- Agriculture
- Checklist
- MimarksC
- MimarksS
range: string
compl_appr:
name: compl_appr
description: placeholder description; linter will ignore this
title: completeness approach
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000071
alias: compl_appr
owner: MigsBa
domain_of:
- Checklist
- Mimag
- Misag
- Miuvig
range: string
contam_score:
name: contam_score
description: placeholder description; linter will ignore this
title: contamination score
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000072
alias: contam_score
owner: MigsBa
domain_of:
- Checklist
- Mimag
- Misag
range: string
contam_screen_input:
name: contam_screen_input
description: placeholder description; linter will ignore this
title: contamination screening input
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000005
alias: contam_screen_input
owner: MigsBa
domain_of:
- Checklist
- Mimag
- Misag
range: string
contam_screen_param:
name: contam_screen_param
description: placeholder description; linter will ignore this
title: contamination screening parameters
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000073
alias: contam_screen_param
owner: MigsBa
domain_of:
- Checklist
- Mimag
- Misag
range: string
decontam_software:
name: decontam_software
description: placeholder description; linter will ignore this
title: decontamination software
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000074
alias: decontam_software
owner: MigsBa
domain_of:
- Checklist
- Mimag
- Misag
range: string
detec_type:
name: detec_type
description: placeholder description; linter will ignore this
title: detection type
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000084
alias: detec_type
owner: MigsBa
domain_of:
- Checklist
- Miuvig
range: string
host_pred_appr:
name: host_pred_appr
description: placeholder description; linter will ignore this
title: host prediction approach
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000088
alias: host_pred_appr
owner: MigsBa
domain_of:
- Checklist
- Miuvig
range: string
host_pred_est_acc:
name: host_pred_est_acc
description: placeholder description; linter will ignore this
title: host prediction estimated accuracy
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000089
alias: host_pred_est_acc
owner: MigsBa
domain_of:
- Checklist
- Miuvig
range: string
pattern: '[^s\|][^\r\n\t\|]*'
structured_pattern:
syntax: '{free_text}'
mag_cov_software:
name: mag_cov_software
description: placeholder description; linter will ignore this
title: MAG coverage software
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000080
alias: mag_cov_software
owner: MigsBa
domain_of:
- Checklist
- Mimag
- Miuvig
range: string
mid:
name: mid
description: placeholder description; linter will ignore this
title: multiplex identifiers
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000047
alias: mid
owner: MigsBa
domain_of:
- Agriculture
- Checklist
- Mimag
- MimarksS
- Mims
- Misag
- Miuvig
range: string
pattern: '[ACGT]+'
structured_pattern:
syntax: '{dna}'
otu_class_appr:
name: otu_class_appr
description: placeholder description; linter will ignore this
title: OTU classification approach
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000085
alias: otu_class_appr
owner: MigsBa
domain_of:
- Checklist
- Miuvig
range: string
otu_db:
name: otu_db
description: placeholder description; linter will ignore this
title: OTU database
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000087
alias: otu_db
owner: MigsBa
domain_of:
- Checklist
- Miuvig
range: string
otu_seq_comp_appr:
name: otu_seq_comp_appr
description: placeholder description; linter will ignore this
title: OTU sequence comparison approach
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000086
alias: otu_seq_comp_appr
owner: MigsBa
domain_of:
- Checklist
- Miuvig
range: string
pattern: '[^s\|][^\r\n\t\|]*;[^s\|][^\r\n\t\|]*;[^s\|][^\r\n\t\|]*'
structured_pattern:
syntax: '{software};{version};{parameters}'
pcr_cond:
name: pcr_cond
description: placeholder description; linter will ignore this
title: pcr conditions
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000049
alias: pcr_cond
owner: MigsBa
domain_of:
- Agriculture
- Checklist
- MimarksC
- MimarksS
range: string
pcr_primers:
name: pcr_primers
description: placeholder description; linter will ignore this
title: pcr primers
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000046
alias: pcr_primers
owner: MigsBa
domain_of:
- Agriculture
- Checklist
- MimarksC
- MimarksS
range: string
ploidy:
name: ploidy
description: placeholder description; linter will ignore this
title: ploidy
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000021
alias: ploidy
owner: MigsBa
domain_of:
- Checklist
- MigsEu
range: string
pattern: '[^s\|][^\r\n\t\|]* [[a-zA-Z]+:[0-9]+]'
structured_pattern:
syntax: '{term_label} [{term_id}]'
pred_genome_struc:
name: pred_genome_struc
description: placeholder description; linter will ignore this
title: predicted genome structure
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000083
alias: pred_genome_struc
owner: MigsBa
domain_of:
- Checklist
- Miuvig
range: string
pred_genome_type:
name: pred_genome_type
description: placeholder description; linter will ignore this
title: predicted genome type
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000082
alias: pred_genome_type
owner: MigsBa
domain_of:
- Checklist
- Miuvig
range: string
propagation:
name: propagation
description: placeholder description; linter will ignore this
title: propagation
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000033
alias: propagation
owner: MigsBa
domain_of:
- Checklist
- MigsEu
- MigsPl
- MigsVi
range: string
pattern: '[^s\|][^\r\n\t\|]*'
structured_pattern:
syntax: '{free_text}'
reassembly_bin:
name: reassembly_bin
description: placeholder description; linter will ignore this
title: reassembly post binning
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000079
alias: reassembly_bin
owner: MigsBa
domain_of:
- Checklist
- Mimag
- Miuvig
range: boolean
seq_quality_check:
name: seq_quality_check
description: placeholder description; linter will ignore this
title: sequence quality check
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000051
alias: seq_quality_check
owner: MigsBa
domain_of:
- Agriculture
- Checklist
- MimarksC
- MimarksS
range: string
single_cell_lysis_appr:
name: single_cell_lysis_appr
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
alias: single_cell_lysis_appr
owner: MigsBa
domain_of:
- Checklist
- Misag
- Miuvig
range: string
single_cell_lysis_prot:
name: single_cell_lysis_prot
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
alias: single_cell_lysis_prot
owner: MigsBa
domain_of:
- Checklist
- Misag
- Miuvig
range: string
size_frac:
name: size_frac
description: placeholder description; linter will ignore this
title: size fraction selected
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000017
alias: size_frac
owner: MigsBa
domain_of:
- Checklist
- Mimag
- MimarksS
- Mims
- Misag
- Miuvig
range: string
pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)?-[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)?
[^s\|][^\r\n\t\|]*'
structured_pattern:
syntax: '{float}-{float} {unit}'
sort_tech:
name: sort_tech
description: placeholder description; linter will ignore this
title: sorting technology
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000075
alias: sort_tech
owner: MigsBa
domain_of:
- Checklist
- Misag
- Miuvig
range: string
source_uvig:
name: source_uvig
description: placeholder description; linter will ignore this
title: source of UViGs
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000035
alias: source_uvig
owner: MigsBa
domain_of:
- Checklist
- Miuvig
range: string
target_gene:
name: target_gene
description: placeholder description; linter will ignore this
title: target gene
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000044
alias: target_gene
owner: MigsBa
domain_of:
- Agriculture
- Checklist
- MimarksC
- MimarksS
range: string
pattern: '[^s\|][^\r\n\t\|]*'
structured_pattern:
syntax: '{free_text}'
target_subfragment:
name: target_subfragment
description: placeholder description; linter will ignore this
title: target subfragment
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000045
alias: target_subfragment
owner: MigsBa
domain_of:
- Agriculture
- Checklist
- MimarksC
- MimarksS
range: string
pattern: '[^s\|][^\r\n\t\|]*'
structured_pattern:
syntax: '{free_text}'
trna_ext_software:
name: trna_ext_software
description: placeholder description; linter will ignore this
title: tRNA extraction software
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000068
alias: trna_ext_software
owner: MigsBa
domain_of:
- Checklist
- Mimag
- Misag
- Miuvig
range: string
pattern: '[^s\|][^\r\n\t\|]*;[^s\|][^\r\n\t\|]*;[^s\|][^\r\n\t\|]*'
structured_pattern:
syntax: '{software};{version};{parameters}'
trnas:
name: trnas
description: placeholder description; linter will ignore this
title: number of standard tRNAs extracted
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000067
alias: trnas
owner: MigsBa
domain_of:
- Checklist
- Mimag
- Misag
- Miuvig
range: integer
minimum_value: 0
maximum_value: 21
vir_ident_software:
name: vir_ident_software
description: placeholder description; linter will ignore this
title: viral identification software
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000081
alias: vir_ident_software
owner: MigsBa
domain_of:
- Checklist
- Miuvig
range: string
pattern: '[^s\|][^\r\n\t\|]*;[^s\|][^\r\n\t\|]*;[^s\|][^\r\n\t\|]*'
structured_pattern:
syntax: '{software};{version};{parameters}'
virus_enrich_appr:
name: virus_enrich_appr
description: placeholder description; linter will ignore this
title: virus enrichment approach
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000036
alias: virus_enrich_appr
owner: MigsBa
domain_of:
- Checklist
- MigsVi
- Miuvig
range: string
wga_amp_appr:
name: wga_amp_appr
description: placeholder description; linter will ignore this
title: WGA amplification approach
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000055
alias: wga_amp_appr
owner: MigsBa
domain_of:
- Checklist
- Misag
- Miuvig
range: string
wga_amp_kit:
name: wga_amp_kit
description: placeholder description; linter will ignore this
title: WGA amplification kit
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000006
alias: wga_amp_kit
owner: MigsBa
domain_of:
- Checklist
- Misag
- Miuvig
range: string
pattern: '[^s\|][^\r\n\t\|]*'
structured_pattern:
syntax: '{free_text}'
class_uri: MIXS:0010003