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Class: MigsBa

placeholder description; linter will ignore this

URI: MIXS:0010003

classDiagram class MigsBa Checklist <|-- MigsBa MigsBa <|-- MigsBaPlantAssociated MigsBa <|-- MigsBaSediment MigsBa <|-- MigsBaSoil MigsBa <|-- MigsBaWater MigsBa : adapters MigsBa : alt MigsBa : annot MigsBa : assembly_name MigsBa : assembly_qual MigsBa --|> ASSEMBLY_QUAL_ENUM : assembly_qual MigsBa : assembly_software MigsBa : bin_param MigsBa : bin_software MigsBa : biotic_relationship MigsBa --|> BIOTIC_RELATIONSHIP_ENUM : biotic_relationship MigsBa : chimera_check MigsBa : collection_date MigsBa : compl_appr MigsBa : compl_score MigsBa : compl_software MigsBa : contam_score MigsBa : contam_screen_input MigsBa : contam_screen_param MigsBa : decontam_software MigsBa : detec_type MigsBa : elev MigsBa : encoded_traits MigsBa : env_broad_scale MigsBa : env_local_scale MigsBa : env_medium MigsBa : estimated_size MigsBa : experimental_factor MigsBa : extrachrom_elements MigsBa : feat_pred MigsBa : geo_loc_name MigsBa : host_disease_stat MigsBa : host_pred_appr MigsBa : host_pred_est_acc MigsBa : host_spec_range MigsBa : isol_growth_condt MigsBa : lat_lon MigsBa : lib_layout MigsBa --|> LIB_LAYOUT_ENUM : lib_layout MigsBa : lib_reads_seqd MigsBa : lib_screen MigsBa : lib_size MigsBa : lib_vector MigsBa : mag_cov_software MigsBa : mid MigsBa : neg_cont_type MigsBa --|> NEG_CONT_TYPE_ENUM : neg_cont_type MigsBa : nucl_acid_amp MigsBa : nucl_acid_ext MigsBa : num_replicons MigsBa : number_contig MigsBa : otu_class_appr MigsBa : otu_db MigsBa : otu_seq_comp_appr MigsBa : pathogenicity MigsBa : pcr_cond MigsBa : pcr_primers MigsBa : ploidy MigsBa : pos_cont_type MigsBa : pred_genome_struc MigsBa : pred_genome_type MigsBa : project_name MigsBa : propagation MigsBa : reassembly_bin MigsBa : ref_biomaterial MigsBa : ref_db MigsBa : rel_to_oxygen MigsBa : samp_mat_process MigsBa : samp_size MigsBa : samp_taxon_id MigsBa : samp_vol_we_dna_ext MigsBa : seq_meth MigsBa : seq_quality_check MigsBa : sim_search_meth MigsBa : single_cell_lysis_appr MigsBa : single_cell_lysis_prot MigsBa : size_frac MigsBa : sop MigsBa : sort_tech MigsBa : source_mat_id MigsBa : source_uvig MigsBa : specific_host MigsBa : subspecf_gen_lin MigsBa : target_gene MigsBa : target_subfragment MigsBa : tax_class MigsBa : tax_ident MigsBa : temp MigsBa : trna_ext_software MigsBa : trnas MigsBa : trophic_level MigsBa --|> TROPHIC_LEVEL_ENUM : trophic_level MigsBa : vir_ident_software MigsBa : virus_enrich_appr MigsBa : wga_amp_appr MigsBa : wga_amp_kit

Inheritance

Slots

Name Cardinality and Range Description Inheritance
rel_to_oxygen 0..1 recommended
String
placeholder description; linter will ignore this direct
adapters 0..1 recommended
String
placeholder description; linter will ignore this direct
annot 0..1 recommended
String
placeholder description; linter will ignore this direct
assembly_name 0..1 recommended
String
placeholder description; linter will ignore this direct
neg_cont_type 0..1 recommended
NEGCONTTYPEENUM
placeholder description; linter will ignore this direct
nucl_acid_amp 0..1 recommended
String
placeholder description; linter will ignore this direct
nucl_acid_ext 0..1 recommended
String
placeholder description; linter will ignore this direct
pathogenicity 0..1 recommended
String
placeholder description; linter will ignore this direct
pos_cont_type 0..1 recommended
String
placeholder description; linter will ignore this direct
sop 0..1 recommended
String
placeholder description; linter will ignore this direct
source_mat_id 0..1 recommended
String
placeholder description; linter will ignore this direct
subspecf_gen_lin 0..1 recommended
String
placeholder description; linter will ignore this direct
tax_ident 0..1 recommended
String
placeholder description; linter will ignore this direct
trophic_level 0..1 recommended
TROPHICLEVELENUM
placeholder description; linter will ignore this direct
biotic_relationship 0..1 recommended
BIOTICRELATIONSHIPENUM
placeholder description; linter will ignore this direct
extrachrom_elements 0..1 recommended
Integer
placeholder description; linter will ignore this direct
host_disease_stat 0..1 recommended
String
placeholder description; linter will ignore this direct
specific_host 0..1 recommended
String
placeholder description; linter will ignore this direct
alt 0..1 recommended
String
placeholder description; linter will ignore this direct
elev 0..1 recommended
String
placeholder description; linter will ignore this direct
temp 0..1 recommended
String
placeholder description; linter will ignore this direct
encoded_traits 0..1
String
placeholder description; linter will ignore this direct
compl_score 0..1
String
placeholder description; linter will ignore this direct
compl_software 0..1
String
placeholder description; linter will ignore this direct
estimated_size 0..1
String
placeholder description; linter will ignore this direct
experimental_factor 0..1
String
placeholder description; linter will ignore this direct
feat_pred 0..1
String
placeholder description; linter will ignore this direct
host_spec_range 0..1
String
placeholder description; linter will ignore this direct
lib_layout 0..1
LIBLAYOUTENUM
placeholder description; linter will ignore this direct
lib_reads_seqd 0..1
Integer
placeholder description; linter will ignore this direct
lib_screen 0..1
String
placeholder description; linter will ignore this direct
lib_size 0..1
Integer
placeholder description; linter will ignore this direct
lib_vector 0..1
String
placeholder description; linter will ignore this direct
ref_db 0..1
String
placeholder description; linter will ignore this direct
samp_mat_process 0..1
String
placeholder description; linter will ignore this direct
samp_size 0..1
String
placeholder description; linter will ignore this direct
samp_vol_we_dna_ext 0..1
String
placeholder description; linter will ignore this direct
sim_search_meth 0..1
String
placeholder description; linter will ignore this direct
tax_class 0..1
String
placeholder description; linter will ignore this direct
assembly_qual 1..1
ASSEMBLYQUALENUM
placeholder description; linter will ignore this direct
assembly_software 1..1
String
placeholder description; linter will ignore this direct
collection_date 1..1
String
placeholder description; linter will ignore this direct
env_broad_scale 1..1
String
placeholder description; linter will ignore this direct
env_local_scale 1..1
String
placeholder description; linter will ignore this direct
env_medium 1..1
String
placeholder description; linter will ignore this direct
geo_loc_name 1..1
String
placeholder description; linter will ignore this direct
isol_growth_condt 1..1
String
placeholder description; linter will ignore this direct
lat_lon 1..1
String
placeholder description; linter will ignore this direct
number_contig 1..1
Integer
placeholder description; linter will ignore this direct
project_name 1..1
String
placeholder description; linter will ignore this direct
samp_taxon_id 1..1
String
placeholder description; linter will ignore this direct
seq_meth 1..1
String
placeholder description; linter will ignore this direct
num_replicons 1..1
Integer
placeholder description; linter will ignore this direct
ref_biomaterial 1..1
String
placeholder description; linter will ignore this direct
bin_param 0..1
String
placeholder description; linter will ignore this Checklist
bin_software 0..1
String
placeholder description; linter will ignore this Checklist
chimera_check 0..1
String
placeholder description; linter will ignore this Checklist
compl_appr 0..1
String
placeholder description; linter will ignore this Checklist
contam_score 0..1
String
placeholder description; linter will ignore this Checklist
contam_screen_input 0..1
String
placeholder description; linter will ignore this Checklist
contam_screen_param 0..1
String
placeholder description; linter will ignore this Checklist
decontam_software 0..1
String
placeholder description; linter will ignore this Checklist
detec_type 0..1
String
placeholder description; linter will ignore this Checklist
host_pred_appr 0..1
String
placeholder description; linter will ignore this Checklist
host_pred_est_acc 0..1
String
placeholder description; linter will ignore this Checklist
mag_cov_software 0..1
String
placeholder description; linter will ignore this Checklist
mid 0..1
String
placeholder description; linter will ignore this Checklist
otu_class_appr 0..1
String
placeholder description; linter will ignore this Checklist
otu_db 0..1
String
placeholder description; linter will ignore this Checklist
otu_seq_comp_appr 0..1
String
placeholder description; linter will ignore this Checklist
pcr_cond 0..1
String
placeholder description; linter will ignore this Checklist
pcr_primers 0..1
String
placeholder description; linter will ignore this Checklist
ploidy 0..1
String
placeholder description; linter will ignore this Checklist
pred_genome_struc 0..1
String
placeholder description; linter will ignore this Checklist
pred_genome_type 0..1
String
placeholder description; linter will ignore this Checklist
propagation 0..1
String
placeholder description; linter will ignore this Checklist
reassembly_bin 0..1
Boolean
placeholder description; linter will ignore this Checklist
seq_quality_check 0..1
String
placeholder description; linter will ignore this Checklist
single_cell_lysis_appr 0..1
String
Checklist
single_cell_lysis_prot 0..1
String
Checklist
size_frac 0..1
String
placeholder description; linter will ignore this Checklist
sort_tech 0..1
String
placeholder description; linter will ignore this Checklist
source_uvig 0..1
String
placeholder description; linter will ignore this Checklist
target_gene 0..1
String
placeholder description; linter will ignore this Checklist
target_subfragment 0..1
String
placeholder description; linter will ignore this Checklist
trna_ext_software 0..1
String
placeholder description; linter will ignore this Checklist
trnas 0..1
Integer
placeholder description; linter will ignore this Checklist
vir_ident_software 0..1
String
placeholder description; linter will ignore this Checklist
virus_enrich_appr 0..1
String
placeholder description; linter will ignore this Checklist
wga_amp_appr 0..1
String
placeholder description; linter will ignore this Checklist
wga_amp_kit 0..1
String
placeholder description; linter will ignore this Checklist

Mixin Usage

mixed into description
MigsBaPlantAssociated placeholder description; linter will ignore this
MigsBaSediment placeholder description; linter will ignore this
MigsBaSoil placeholder description; linter will ignore this
MigsBaWater placeholder description; linter will ignore this

Usages

used by used in type used
Database migs_ba_set range MigsBa

Identifier and Mapping Information

Schema Source

  • from schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first

Mappings

Mapping Type Mapped Value
self MIXS:0010003
native MIXS:MigsBa

LinkML Source

Direct

name: MigsBa
description: placeholder description; linter will ignore this
title: migs_ba
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
is_a: Checklist
mixin: true
slots:
- rel_to_oxygen
- adapters
- annot
- assembly_name
- neg_cont_type
- nucl_acid_amp
- nucl_acid_ext
- pathogenicity
- pos_cont_type
- sop
- source_mat_id
- subspecf_gen_lin
- tax_ident
- trophic_level
- biotic_relationship
- extrachrom_elements
- host_disease_stat
- specific_host
- alt
- elev
- temp
- encoded_traits
- compl_score
- compl_software
- estimated_size
- experimental_factor
- feat_pred
- host_spec_range
- lib_layout
- lib_reads_seqd
- lib_screen
- lib_size
- lib_vector
- ref_db
- samp_mat_process
- samp_size
- samp_vol_we_dna_ext
- sim_search_meth
- tax_class
- assembly_qual
- assembly_software
- collection_date
- env_broad_scale
- env_local_scale
- env_medium
- geo_loc_name
- isol_growth_condt
- lat_lon
- number_contig
- project_name
- samp_taxon_id
- seq_meth
- num_replicons
- ref_biomaterial
slot_usage:
  adapters:
    name: adapters
    domain_of:
    - Agriculture
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    recommended: true
  alt:
    name: alt
    domain_of:
    - Air
    - Checklist
    - HostAssociated
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - MiscellaneousNaturalOrArtificialEnvironment
    - Miuvig
    - SymbiontAssociated
    recommended: true
  annot:
    name: annot
    domain_of:
    - Agriculture
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - Mims
    - Misag
    - Miuvig
    recommended: true
  assembly_name:
    name: assembly_name
    domain_of:
    - Agriculture
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - Mims
    - Misag
    - Miuvig
    recommended: true
  assembly_qual:
    name: assembly_qual
    domain_of:
    - Agriculture
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - Mims
    - Misag
    - Miuvig
    required: true
  assembly_software:
    name: assembly_software
    domain_of:
    - Agriculture
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    required: true
  biotic_relationship:
    name: biotic_relationship
    domain_of:
    - Agriculture
    - Checklist
    - MigsBa
    - MigsEu
    - MigsVi
    - MimarksC
    - Miuvig
    recommended: true
  collection_date:
    name: collection_date
    domain_of:
    - Checklist
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    - SymbiontAssociated
    required: true
  compl_score:
    name: compl_score
    domain_of:
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - Misag
    - Miuvig
  compl_software:
    name: compl_software
    domain_of:
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - Misag
    - Miuvig
  elev:
    name: elev
    domain_of:
    - Agriculture
    - Air
    - Checklist
    - HostAssociated
    - HydrocarbonResourcesCores
    - MicrobialMatBiofilm
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - MiscellaneousNaturalOrArtificialEnvironment
    - Miuvig
    - PlantAssociated
    - Sediment
    - Soil
    - SymbiontAssociated
    - Water
    recommended: true
  encoded_traits:
    name: encoded_traits
    domain_of:
    - Checklist
    - MigsBa
    - MigsPl
    - MigsVi
  env_broad_scale:
    name: env_broad_scale
    domain_of:
    - Checklist
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    - SymbiontAssociated
    required: true
  env_local_scale:
    name: env_local_scale
    domain_of:
    - Checklist
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    - SymbiontAssociated
    required: true
  env_medium:
    name: env_medium
    domain_of:
    - Checklist
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    - SymbiontAssociated
    required: true
  estimated_size:
    name: estimated_size
    domain_of:
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Miuvig
  experimental_factor:
    name: experimental_factor
    domain_of:
    - Checklist
    - FoodAnimalAndAnimalFeed
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
  extrachrom_elements:
    name: extrachrom_elements
    domain_of:
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MimarksC
    recommended: true
  feat_pred:
    name: feat_pred
    domain_of:
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - Mims
    - Misag
    - Miuvig
  geo_loc_name:
    name: geo_loc_name
    domain_of:
    - Checklist
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    - SymbiontAssociated
    required: true
  host_disease_stat:
    name: host_disease_stat
    domain_of:
    - Agriculture
    - Checklist
    - FoodFarmEnvironment
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - MigsBa
    - MigsEu
    - MigsVi
    - Miuvig
    - PlantAssociated
    recommended: true
  host_spec_range:
    name: host_spec_range
    domain_of:
    - Agriculture
    - Checklist
    - MigsBa
    - MigsEu
    - MigsPl
    - MigsVi
    - Miuvig
  isol_growth_condt:
    name: isol_growth_condt
    domain_of:
    - Agriculture
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - MimarksC
    required: true
  lat_lon:
    name: lat_lon
    domain_of:
    - Checklist
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    - SymbiontAssociated
    required: true
  lib_layout:
    name: lib_layout
    domain_of:
    - Agriculture
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksS
    - Mims
    - Misag
    - Miuvig
  lib_reads_seqd:
    name: lib_reads_seqd
    domain_of:
    - Agriculture
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksS
    - Mims
    - Misag
    - Miuvig
  lib_screen:
    name: lib_screen
    domain_of:
    - Agriculture
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksS
    - Mims
    - Misag
    - Miuvig
  lib_size:
    name: lib_size
    domain_of:
    - Agriculture
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksS
    - Mims
    - Misag
    - Miuvig
  lib_vector:
    name: lib_vector
    domain_of:
    - Agriculture
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksS
    - Mims
    - Misag
    - Miuvig
  neg_cont_type:
    name: neg_cont_type
    domain_of:
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    recommended: true
  nucl_acid_amp:
    name: nucl_acid_amp
    domain_of:
    - Agriculture
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    recommended: true
  nucl_acid_ext:
    name: nucl_acid_ext
    domain_of:
    - Agriculture
    - Checklist
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    recommended: true
  num_replicons:
    name: num_replicons
    domain_of:
    - Checklist
    - MigsBa
    - MigsEu
    - MigsVi
    required: true
  number_contig:
    name: number_contig
    domain_of:
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - Mims
    - Misag
    - Miuvig
    required: true
  pathogenicity:
    name: pathogenicity
    domain_of:
    - Agriculture
    - Checklist
    - MigsBa
    - MigsEu
    - MigsVi
    - Miuvig
    recommended: true
  pos_cont_type:
    name: pos_cont_type
    domain_of:
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    recommended: true
  project_name:
    name: project_name
    domain_of:
    - Air
    - BuiltEnvironment
    - Checklist
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - MiscellaneousNaturalOrArtificialEnvironment
    - Miuvig
    - PlantAssociated
    - Sediment
    - Soil
    - SymbiontAssociated
    - WastewaterSludge
    - Water
    required: true
  ref_biomaterial:
    name: ref_biomaterial
    domain_of:
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - Mims
    - Misag
    - Miuvig
    required: true
  ref_db:
    name: ref_db
    domain_of:
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - Mims
    - Misag
    - Miuvig
  rel_to_oxygen:
    name: rel_to_oxygen
    domain_of:
    - Checklist
    - MigsBa
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    recommended: true
  samp_mat_process:
    name: samp_mat_process
    domain_of:
    - Agriculture
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
  samp_size:
    name: samp_size
    domain_of:
    - Agriculture
    - Checklist
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
  samp_taxon_id:
    name: samp_taxon_id
    domain_of:
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    required: true
  samp_vol_we_dna_ext:
    name: samp_vol_we_dna_ext
    domain_of:
    - Agriculture
    - Air
    - Checklist
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - MiscellaneousNaturalOrArtificialEnvironment
    - Miuvig
    - PlantAssociated
    - Sediment
    - Soil
    - SymbiontAssociated
    - WastewaterSludge
    - Water
  seq_meth:
    name: seq_meth
    domain_of:
    - Agriculture
    - Checklist
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    required: true
  sim_search_meth:
    name: sim_search_meth
    domain_of:
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - Mims
    - Misag
    - Miuvig
  sop:
    name: sop
    domain_of:
    - Agriculture
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    recommended: true
  source_mat_id:
    name: source_mat_id
    domain_of:
    - Agriculture
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    - SymbiontAssociated
    recommended: true
  specific_host:
    name: specific_host
    domain_of:
    - Agriculture
    - Checklist
    - MigsBa
    - MigsEu
    - MigsPl
    - MigsVi
    - Miuvig
    recommended: true
  subspecf_gen_lin:
    name: subspecf_gen_lin
    domain_of:
    - Checklist
    - FoodFoodProductionFacility
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - MimarksC
    recommended: true
  tax_class:
    name: tax_class
    domain_of:
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - Mims
    - Misag
    - Miuvig
  tax_ident:
    name: tax_ident
    domain_of:
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - Misag
    - Miuvig
    recommended: true
  temp:
    name: temp
    domain_of:
    - Agriculture
    - Air
    - Checklist
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodHumanFoods
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - MiscellaneousNaturalOrArtificialEnvironment
    - Miuvig
    - PlantAssociated
    - Sediment
    - Soil
    - SymbiontAssociated
    - WastewaterSludge
    - Water
    recommended: true
  trophic_level:
    name: trophic_level
    domain_of:
    - Agriculture
    - Checklist
    - MigsBa
    - MigsEu
    - MimarksC
    recommended: true
class_uri: MIXS:0010003

Induced

name: MigsBa
description: placeholder description; linter will ignore this
title: migs_ba
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
is_a: Checklist
mixin: true
slot_usage:
  adapters:
    name: adapters
    domain_of:
    - Agriculture
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    recommended: true
  alt:
    name: alt
    domain_of:
    - Air
    - Checklist
    - HostAssociated
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - MiscellaneousNaturalOrArtificialEnvironment
    - Miuvig
    - SymbiontAssociated
    recommended: true
  annot:
    name: annot
    domain_of:
    - Agriculture
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - Mims
    - Misag
    - Miuvig
    recommended: true
  assembly_name:
    name: assembly_name
    domain_of:
    - Agriculture
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - Mims
    - Misag
    - Miuvig
    recommended: true
  assembly_qual:
    name: assembly_qual
    domain_of:
    - Agriculture
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - Mims
    - Misag
    - Miuvig
    required: true
  assembly_software:
    name: assembly_software
    domain_of:
    - Agriculture
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    required: true
  biotic_relationship:
    name: biotic_relationship
    domain_of:
    - Agriculture
    - Checklist
    - MigsBa
    - MigsEu
    - MigsVi
    - MimarksC
    - Miuvig
    recommended: true
  collection_date:
    name: collection_date
    domain_of:
    - Checklist
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    - SymbiontAssociated
    required: true
  compl_score:
    name: compl_score
    domain_of:
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - Misag
    - Miuvig
  compl_software:
    name: compl_software
    domain_of:
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - Misag
    - Miuvig
  elev:
    name: elev
    domain_of:
    - Agriculture
    - Air
    - Checklist
    - HostAssociated
    - HydrocarbonResourcesCores
    - MicrobialMatBiofilm
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - MiscellaneousNaturalOrArtificialEnvironment
    - Miuvig
    - PlantAssociated
    - Sediment
    - Soil
    - SymbiontAssociated
    - Water
    recommended: true
  encoded_traits:
    name: encoded_traits
    domain_of:
    - Checklist
    - MigsBa
    - MigsPl
    - MigsVi
  env_broad_scale:
    name: env_broad_scale
    domain_of:
    - Checklist
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    - SymbiontAssociated
    required: true
  env_local_scale:
    name: env_local_scale
    domain_of:
    - Checklist
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    - SymbiontAssociated
    required: true
  env_medium:
    name: env_medium
    domain_of:
    - Checklist
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    - SymbiontAssociated
    required: true
  estimated_size:
    name: estimated_size
    domain_of:
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Miuvig
  experimental_factor:
    name: experimental_factor
    domain_of:
    - Checklist
    - FoodAnimalAndAnimalFeed
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
  extrachrom_elements:
    name: extrachrom_elements
    domain_of:
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MimarksC
    recommended: true
  feat_pred:
    name: feat_pred
    domain_of:
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - Mims
    - Misag
    - Miuvig
  geo_loc_name:
    name: geo_loc_name
    domain_of:
    - Checklist
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    - SymbiontAssociated
    required: true
  host_disease_stat:
    name: host_disease_stat
    domain_of:
    - Agriculture
    - Checklist
    - FoodFarmEnvironment
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - MigsBa
    - MigsEu
    - MigsVi
    - Miuvig
    - PlantAssociated
    recommended: true
  host_spec_range:
    name: host_spec_range
    domain_of:
    - Agriculture
    - Checklist
    - MigsBa
    - MigsEu
    - MigsPl
    - MigsVi
    - Miuvig
  isol_growth_condt:
    name: isol_growth_condt
    domain_of:
    - Agriculture
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - MimarksC
    required: true
  lat_lon:
    name: lat_lon
    domain_of:
    - Checklist
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    - SymbiontAssociated
    required: true
  lib_layout:
    name: lib_layout
    domain_of:
    - Agriculture
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksS
    - Mims
    - Misag
    - Miuvig
  lib_reads_seqd:
    name: lib_reads_seqd
    domain_of:
    - Agriculture
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksS
    - Mims
    - Misag
    - Miuvig
  lib_screen:
    name: lib_screen
    domain_of:
    - Agriculture
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksS
    - Mims
    - Misag
    - Miuvig
  lib_size:
    name: lib_size
    domain_of:
    - Agriculture
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksS
    - Mims
    - Misag
    - Miuvig
  lib_vector:
    name: lib_vector
    domain_of:
    - Agriculture
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksS
    - Mims
    - Misag
    - Miuvig
  neg_cont_type:
    name: neg_cont_type
    domain_of:
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    recommended: true
  nucl_acid_amp:
    name: nucl_acid_amp
    domain_of:
    - Agriculture
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    recommended: true
  nucl_acid_ext:
    name: nucl_acid_ext
    domain_of:
    - Agriculture
    - Checklist
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    recommended: true
  num_replicons:
    name: num_replicons
    domain_of:
    - Checklist
    - MigsBa
    - MigsEu
    - MigsVi
    required: true
  number_contig:
    name: number_contig
    domain_of:
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - Mims
    - Misag
    - Miuvig
    required: true
  pathogenicity:
    name: pathogenicity
    domain_of:
    - Agriculture
    - Checklist
    - MigsBa
    - MigsEu
    - MigsVi
    - Miuvig
    recommended: true
  pos_cont_type:
    name: pos_cont_type
    domain_of:
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    recommended: true
  project_name:
    name: project_name
    domain_of:
    - Air
    - BuiltEnvironment
    - Checklist
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - MiscellaneousNaturalOrArtificialEnvironment
    - Miuvig
    - PlantAssociated
    - Sediment
    - Soil
    - SymbiontAssociated
    - WastewaterSludge
    - Water
    required: true
  ref_biomaterial:
    name: ref_biomaterial
    domain_of:
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - Mims
    - Misag
    - Miuvig
    required: true
  ref_db:
    name: ref_db
    domain_of:
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - Mims
    - Misag
    - Miuvig
  rel_to_oxygen:
    name: rel_to_oxygen
    domain_of:
    - Checklist
    - MigsBa
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    recommended: true
  samp_mat_process:
    name: samp_mat_process
    domain_of:
    - Agriculture
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
  samp_size:
    name: samp_size
    domain_of:
    - Agriculture
    - Checklist
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
  samp_taxon_id:
    name: samp_taxon_id
    domain_of:
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    required: true
  samp_vol_we_dna_ext:
    name: samp_vol_we_dna_ext
    domain_of:
    - Agriculture
    - Air
    - Checklist
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - MiscellaneousNaturalOrArtificialEnvironment
    - Miuvig
    - PlantAssociated
    - Sediment
    - Soil
    - SymbiontAssociated
    - WastewaterSludge
    - Water
  seq_meth:
    name: seq_meth
    domain_of:
    - Agriculture
    - Checklist
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    required: true
  sim_search_meth:
    name: sim_search_meth
    domain_of:
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - Mims
    - Misag
    - Miuvig
  sop:
    name: sop
    domain_of:
    - Agriculture
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    recommended: true
  source_mat_id:
    name: source_mat_id
    domain_of:
    - Agriculture
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    - SymbiontAssociated
    recommended: true
  specific_host:
    name: specific_host
    domain_of:
    - Agriculture
    - Checklist
    - MigsBa
    - MigsEu
    - MigsPl
    - MigsVi
    - Miuvig
    recommended: true
  subspecf_gen_lin:
    name: subspecf_gen_lin
    domain_of:
    - Checklist
    - FoodFoodProductionFacility
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - MimarksC
    recommended: true
  tax_class:
    name: tax_class
    domain_of:
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - Mims
    - Misag
    - Miuvig
  tax_ident:
    name: tax_ident
    domain_of:
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - Misag
    - Miuvig
    recommended: true
  temp:
    name: temp
    domain_of:
    - Agriculture
    - Air
    - Checklist
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodHumanFoods
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - MiscellaneousNaturalOrArtificialEnvironment
    - Miuvig
    - PlantAssociated
    - Sediment
    - Soil
    - SymbiontAssociated
    - WastewaterSludge
    - Water
    recommended: true
  trophic_level:
    name: trophic_level
    domain_of:
    - Agriculture
    - Checklist
    - MigsBa
    - MigsEu
    - MimarksC
    recommended: true
attributes:
  rel_to_oxygen:
    name: rel_to_oxygen
    description: placeholder description; linter will ignore this
    title: relationship to oxygen
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000015
    alias: rel_to_oxygen
    owner: MigsBa
    domain_of:
    - Checklist
    - MigsBa
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    range: string
    recommended: true
  adapters:
    name: adapters
    description: placeholder description; linter will ignore this
    title: adapters
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000048
    alias: adapters
    owner: MigsBa
    domain_of:
    - Agriculture
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    range: string
    recommended: true
    pattern: '[ACGT]+;[ACGT]+'
    structured_pattern:
      syntax: '{dna};{dna}'
  annot:
    name: annot
    description: placeholder description; linter will ignore this
    title: annotation
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000059
    alias: annot
    owner: MigsBa
    domain_of:
    - Agriculture
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - Mims
    - Misag
    - Miuvig
    range: string
    recommended: true
    pattern: '[^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{free_text}'
  assembly_name:
    name: assembly_name
    description: placeholder description; linter will ignore this
    title: assembly name
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000057
    alias: assembly_name
    owner: MigsBa
    domain_of:
    - Agriculture
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - Mims
    - Misag
    - Miuvig
    range: string
    recommended: true
    pattern: '[^s\|][^\r\n\t\|]* [^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{free_text} {free_text}'
  neg_cont_type:
    name: neg_cont_type
    description: placeholder description; linter will ignore this
    title: negative control type
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0001321
    alias: neg_cont_type
    owner: MigsBa
    domain_of:
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    range: NEG_CONT_TYPE_ENUM
    recommended: true
  nucl_acid_amp:
    name: nucl_acid_amp
    description: placeholder description; linter will ignore this
    title: nucleic acid amplification
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000038
    alias: nucl_acid_amp
    owner: MigsBa
    domain_of:
    - Agriculture
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    range: string
    recommended: true
    pattern: (10.\d{4,9}/[-._;()/:a-zA-Z0-9]+)|(PMID:(\d{7,8}))|((?:https?://)?(?:www\.)?[\w-]+(?:\.[\w-]+)+[\w.,@?^=%&:/~+#-]*[\w@?^=%&/~+#-])
    structured_pattern:
      syntax: ({DOI})|({PMID})|({URL})
  nucl_acid_ext:
    name: nucl_acid_ext
    description: placeholder description; linter will ignore this
    title: nucleic acid extraction
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000037
    alias: nucl_acid_ext
    owner: MigsBa
    domain_of:
    - Agriculture
    - Checklist
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    range: string
    recommended: true
    pattern: (10.\d{4,9}/[-._;()/:a-zA-Z0-9]+)|(PMID:(\d{7,8}))|((?:https?://)?(?:www\.)?[\w-]+(?:\.[\w-]+)+[\w.,@?^=%&:/~+#-]*[\w@?^=%&/~+#-])
    structured_pattern:
      syntax: ({DOI})|({PMID})|({URL})
  pathogenicity:
    name: pathogenicity
    description: placeholder description; linter will ignore this
    title: known pathogenicity
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000027
    alias: pathogenicity
    owner: MigsBa
    domain_of:
    - Agriculture
    - Checklist
    - MigsBa
    - MigsEu
    - MigsVi
    - Miuvig
    range: string
    recommended: true
    pattern: '[^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{free_text}'
  pos_cont_type:
    name: pos_cont_type
    description: placeholder description; linter will ignore this
    title: positive control type
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0001322
    alias: pos_cont_type
    owner: MigsBa
    domain_of:
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    range: string
    recommended: true
  sop:
    name: sop
    description: placeholder description; linter will ignore this
    title: relevant standard operating procedures
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000090
    alias: sop
    owner: MigsBa
    domain_of:
    - Agriculture
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    range: string
    recommended: true
    pattern: (((10.\d{4,9}/[-._;()/:a-zA-Z0-9]+)|(PMID:(\d{7,8}))|((?:https?://)?(?:www\.)?[\w-]+(?:\.[\w-]+)+[\w.,@?^=%&:/~+#-]*[\w@?^=%&/~+#-]))\|)*(((10.\d{4,9}/[-._;()/:a-zA-Z0-9]+)|(PMID:(\d{7,8}))|((?:https?://)?(?:www\.)?[\w-]+(?:\.[\w-]+)+[\w.,@?^=%&:/~+#-]*[\w@?^=%&/~+#-])))
    structured_pattern:
      syntax: ((({DOI})|({PMID})|({URL}))\|)*((({DOI})|({PMID})|({URL})))
  source_mat_id:
    name: source_mat_id
    description: placeholder description; linter will ignore this
    title: source material identifiers
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000026
    alias: source_mat_id
    owner: MigsBa
    domain_of:
    - Agriculture
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    - SymbiontAssociated
    range: string
    recommended: true
    pattern: '[^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{free_text}'
  subspecf_gen_lin:
    name: subspecf_gen_lin
    description: placeholder description; linter will ignore this
    title: subspecific genetic lineage
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000020
    alias: subspecf_gen_lin
    owner: MigsBa
    domain_of:
    - Checklist
    - FoodFoodProductionFacility
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - MimarksC
    range: string
    recommended: true
  tax_ident:
    name: tax_ident
    description: placeholder description; linter will ignore this
    title: taxonomic identity marker
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000053
    alias: tax_ident
    owner: MigsBa
    domain_of:
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - Misag
    - Miuvig
    range: string
    recommended: true
  trophic_level:
    name: trophic_level
    description: placeholder description; linter will ignore this
    title: trophic level
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000032
    alias: trophic_level
    owner: MigsBa
    domain_of:
    - Agriculture
    - Checklist
    - MigsBa
    - MigsEu
    - MimarksC
    range: TROPHIC_LEVEL_ENUM
    recommended: true
  biotic_relationship:
    name: biotic_relationship
    description: placeholder description; linter will ignore this
    title: observed biotic relationship
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000028
    alias: biotic_relationship
    owner: MigsBa
    domain_of:
    - Agriculture
    - Checklist
    - MigsBa
    - MigsEu
    - MigsVi
    - MimarksC
    - Miuvig
    range: BIOTIC_RELATIONSHIP_ENUM
    recommended: true
  extrachrom_elements:
    name: extrachrom_elements
    description: placeholder description; linter will ignore this
    title: extrachromosomal elements
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000023
    alias: extrachrom_elements
    owner: MigsBa
    domain_of:
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MimarksC
    range: integer
    recommended: true
  host_disease_stat:
    name: host_disease_stat
    description: placeholder description; linter will ignore this
    title: host disease status
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000031
    alias: host_disease_stat
    owner: MigsBa
    domain_of:
    - Agriculture
    - Checklist
    - FoodFarmEnvironment
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - MigsBa
    - MigsEu
    - MigsVi
    - Miuvig
    - PlantAssociated
    range: string
    recommended: true
    pattern: ((([^s\|][^\r\n\t\|]* [[a-zA-Z]+:[0-9]+])|[^s\|][^\r\n\t\|]*)\|)*(([^s\|][^\r\n\t\|]*
      [[a-zA-Z]+:[0-9]+])|[^s\|][^\r\n\t\|]*)
    structured_pattern:
      syntax: ((({term_label} [{term_id}])|{free_text})\|)*(({term_label} [{term_id}])|{free_text})
  specific_host:
    name: specific_host
    description: placeholder description; linter will ignore this
    title: host scientific name
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000029
    alias: specific_host
    owner: MigsBa
    domain_of:
    - Agriculture
    - Checklist
    - MigsBa
    - MigsEu
    - MigsPl
    - MigsVi
    - Miuvig
    range: string
    recommended: true
    pattern: '[^s\|][^\r\n\t\|]*|NCBITaxon:[0-9]+'
    structured_pattern:
      syntax: '{free_text}|{ncbi_term_id}'
  alt:
    name: alt
    description: placeholder description; linter will ignore this
    title: altitude
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000094
    alias: alt
    owner: MigsBa
    domain_of:
    - Air
    - Checklist
    - HostAssociated
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - MiscellaneousNaturalOrArtificialEnvironment
    - Miuvig
    - SymbiontAssociated
    range: string
    recommended: true
    pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{float} {unit}'
  elev:
    name: elev
    description: placeholder description; linter will ignore this
    title: elevation
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000093
    alias: elev
    owner: MigsBa
    domain_of:
    - Agriculture
    - Air
    - Checklist
    - HostAssociated
    - HydrocarbonResourcesCores
    - MicrobialMatBiofilm
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - MiscellaneousNaturalOrArtificialEnvironment
    - Miuvig
    - PlantAssociated
    - Sediment
    - Soil
    - SymbiontAssociated
    - Water
    range: string
    recommended: true
    pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{float} {unit}'
  temp:
    name: temp
    description: placeholder description; linter will ignore this
    title: temperature
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000113
    alias: temp
    owner: MigsBa
    domain_of:
    - Agriculture
    - Air
    - Checklist
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodHumanFoods
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - MiscellaneousNaturalOrArtificialEnvironment
    - Miuvig
    - PlantAssociated
    - Sediment
    - Soil
    - SymbiontAssociated
    - WastewaterSludge
    - Water
    range: string
    recommended: true
    pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{float} {unit}'
  encoded_traits:
    name: encoded_traits
    description: placeholder description; linter will ignore this
    title: encoded traits
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000034
    alias: encoded_traits
    owner: MigsBa
    domain_of:
    - Checklist
    - MigsBa
    - MigsPl
    - MigsVi
    range: string
    pattern: '[^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{free_text}'
  compl_score:
    name: compl_score
    description: placeholder description; linter will ignore this
    title: completeness score
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000069
    alias: compl_score
    owner: MigsBa
    domain_of:
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - Misag
    - Miuvig
    range: string
  compl_software:
    name: compl_software
    description: placeholder description; linter will ignore this
    title: completeness software
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000070
    alias: compl_software
    owner: MigsBa
    domain_of:
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - Misag
    - Miuvig
    range: string
    pattern: '[^s\|][^\r\n\t\|]*;[^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{software};{version}'
  estimated_size:
    name: estimated_size
    description: placeholder description; linter will ignore this
    title: estimated size
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000024
    alias: estimated_size
    owner: MigsBa
    domain_of:
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Miuvig
    range: string
    pattern: '[+-]?[1-9][0-9]* bp'
    structured_pattern:
      syntax: '{integer} bp'
  experimental_factor:
    name: experimental_factor
    description: placeholder description; linter will ignore this
    title: experimental factor
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000008
    alias: experimental_factor
    owner: MigsBa
    domain_of:
    - Checklist
    - FoodAnimalAndAnimalFeed
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    range: string
  feat_pred:
    name: feat_pred
    description: placeholder description; linter will ignore this
    title: feature prediction
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000061
    alias: feat_pred
    owner: MigsBa
    domain_of:
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - Mims
    - Misag
    - Miuvig
    range: string
    pattern: '[^s\|][^\r\n\t\|]*;[^s\|][^\r\n\t\|]*;[^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{software};{version};{parameters}'
  host_spec_range:
    name: host_spec_range
    description: placeholder description; linter will ignore this
    title: host specificity or range
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000030
    alias: host_spec_range
    owner: MigsBa
    domain_of:
    - Agriculture
    - Checklist
    - MigsBa
    - MigsEu
    - MigsPl
    - MigsVi
    - Miuvig
    range: string
    pattern: ([+-]?[1-9][0-9]*\|)*[+-]?[1-9][0-9]*
    structured_pattern:
      syntax: ({integer}\|)*{integer}
  lib_layout:
    name: lib_layout
    description: placeholder description; linter will ignore this
    title: library layout
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000041
    alias: lib_layout
    owner: MigsBa
    domain_of:
    - Agriculture
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    range: LIB_LAYOUT_ENUM
  lib_reads_seqd:
    name: lib_reads_seqd
    description: placeholder description; linter will ignore this
    title: library reads sequenced
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000040
    alias: lib_reads_seqd
    owner: MigsBa
    domain_of:
    - Agriculture
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    range: integer
  lib_screen:
    name: lib_screen
    description: placeholder description; linter will ignore this
    title: library screening strategy
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000043
    alias: lib_screen
    owner: MigsBa
    domain_of:
    - Agriculture
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    range: string
    pattern: '[^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{free_text}'
  lib_size:
    name: lib_size
    description: placeholder description; linter will ignore this
    title: library size
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000039
    alias: lib_size
    owner: MigsBa
    domain_of:
    - Agriculture
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    range: integer
  lib_vector:
    name: lib_vector
    description: placeholder description; linter will ignore this
    title: library vector
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000042
    alias: lib_vector
    owner: MigsBa
    domain_of:
    - Agriculture
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    range: string
    pattern: '[^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{free_text}'
  ref_db:
    name: ref_db
    description: placeholder description; linter will ignore this
    title: reference database(s)
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000062
    alias: ref_db
    owner: MigsBa
    domain_of:
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - Mims
    - Misag
    - Miuvig
    range: string
    pattern: '[^s\|][^\r\n\t\|]+;[^s\|][^\r\n\t\|]*;[^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{database};{version};{reference}'
  samp_mat_process:
    name: samp_mat_process
    description: placeholder description; linter will ignore this
    title: sample material processing
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000016
    alias: samp_mat_process
    owner: MigsBa
    domain_of:
    - Agriculture
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    range: string
    pattern: '[^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{free_text}'
  samp_size:
    name: samp_size
    description: placeholder description; linter will ignore this
    title: amount or size of sample collected
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000001
    alias: samp_size
    owner: MigsBa
    domain_of:
    - Agriculture
    - Checklist
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    range: string
    pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{float} {unit}'
  samp_vol_we_dna_ext:
    name: samp_vol_we_dna_ext
    description: placeholder description; linter will ignore this
    title: sample volume or weight for DNA extraction
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000111
    alias: samp_vol_we_dna_ext
    owner: MigsBa
    domain_of:
    - Agriculture
    - Air
    - Checklist
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - MiscellaneousNaturalOrArtificialEnvironment
    - Miuvig
    - PlantAssociated
    - Sediment
    - Soil
    - SymbiontAssociated
    - WastewaterSludge
    - Water
    range: string
    pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{float} {unit}'
  sim_search_meth:
    name: sim_search_meth
    description: placeholder description; linter will ignore this
    title: similarity search method
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000063
    alias: sim_search_meth
    owner: MigsBa
    domain_of:
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - Mims
    - Misag
    - Miuvig
    range: string
    pattern: '[^s\|][^\r\n\t\|]*;[^s\|][^\r\n\t\|]*;[^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{software};{version};{parameters}'
  tax_class:
    name: tax_class
    description: placeholder description; linter will ignore this
    title: taxonomic classification
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000064
    alias: tax_class
    owner: MigsBa
    domain_of:
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - Mims
    - Misag
    - Miuvig
    range: string
    pattern: '[^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{free_text}'
  assembly_qual:
    name: assembly_qual
    description: placeholder description; linter will ignore this
    title: assembly quality
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000056
    alias: assembly_qual
    owner: MigsBa
    domain_of:
    - Agriculture
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - Mims
    - Misag
    - Miuvig
    range: ASSEMBLY_QUAL_ENUM
    required: true
  assembly_software:
    name: assembly_software
    description: placeholder description; linter will ignore this
    title: assembly software
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000058
    alias: assembly_software
    owner: MigsBa
    domain_of:
    - Agriculture
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    range: string
    required: true
    pattern: '[^s\|][^\r\n\t\|]*;[^s\|][^\r\n\t\|]*;[^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{software};{version};{parameters}'
  collection_date:
    name: collection_date
    description: placeholder description; linter will ignore this
    title: collection date
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000011
    alias: collection_date
    owner: MigsBa
    domain_of:
    - Checklist
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    - SymbiontAssociated
    range: string
    required: true
  env_broad_scale:
    name: env_broad_scale
    description: placeholder description; linter will ignore this
    title: broad-scale environmental context
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000012
    alias: env_broad_scale
    owner: MigsBa
    domain_of:
    - Checklist
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    - SymbiontAssociated
    range: string
    required: true
    pattern: '[^s\|][^\r\n\t\|]* [[a-zA-Z]+:[0-9]+]'
    structured_pattern:
      syntax: '{term_label} [{term_id}]'
  env_local_scale:
    name: env_local_scale
    description: placeholder description; linter will ignore this
    title: local environmental context
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000013
    alias: env_local_scale
    owner: MigsBa
    domain_of:
    - Checklist
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    - SymbiontAssociated
    range: string
    required: true
    pattern: '[^s\|][^\r\n\t\|]* [[a-zA-Z]+:[0-9]+]'
    structured_pattern:
      syntax: '{term_label} [{term_id}]'
  env_medium:
    name: env_medium
    description: placeholder description; linter will ignore this
    title: environmental medium
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000014
    alias: env_medium
    owner: MigsBa
    domain_of:
    - Checklist
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    - SymbiontAssociated
    range: string
    required: true
    pattern: '[^s\|][^\r\n\t\|]* [[a-zA-Z]+:[0-9]+]'
    structured_pattern:
      syntax: '{term_label} [{term_id}]'
  geo_loc_name:
    name: geo_loc_name
    description: placeholder description; linter will ignore this
    title: geographic location (country and/or sea,region)
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000010
    alias: geo_loc_name
    owner: MigsBa
    domain_of:
    - Checklist
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    - SymbiontAssociated
    range: string
    required: true
    pattern: '[^s\|][^\r\n\t\|]*: [^s\|][^\r\n\t\|]*, [^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{term}: {term}, {free_text}'
  isol_growth_condt:
    name: isol_growth_condt
    description: placeholder description; linter will ignore this
    title: isolation and growth condition
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000003
    alias: isol_growth_condt
    owner: MigsBa
    domain_of:
    - Agriculture
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - MimarksC
    range: string
    required: true
    pattern: (10.\d{4,9}/[-._;()/:a-zA-Z0-9]+)|(PMID:(\d{7,8}))|((?:https?://)?(?:www\.)?[\w-]+(?:\.[\w-]+)+[\w.,@?^=%&:/~+#-]*[\w@?^=%&/~+#-])
    structured_pattern:
      syntax: ({DOI})|({PMID})|({URL})
  lat_lon:
    name: lat_lon
    description: placeholder description; linter will ignore this
    title: geographic location (latitude and longitude)
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000009
    alias: lat_lon
    owner: MigsBa
    domain_of:
    - Checklist
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    - SymbiontAssociated
    range: string
    required: true
    pattern: '[-+]?([1-8]?\d(\.\d+)?|90(\.0+)?) [-+]?(180(\.0+)?|((1[0-7]\d)|([1-9]?\d))(\.\d+)?)'
    structured_pattern:
      syntax: '{lat} {lon}'
  number_contig:
    name: number_contig
    description: placeholder description; linter will ignore this
    title: number of contigs
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000060
    alias: number_contig
    owner: MigsBa
    domain_of:
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - Mims
    - Misag
    - Miuvig
    range: integer
    required: true
  project_name:
    name: project_name
    description: placeholder description; linter will ignore this
    title: project name
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000092
    alias: project_name
    owner: MigsBa
    domain_of:
    - Air
    - BuiltEnvironment
    - Checklist
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - MiscellaneousNaturalOrArtificialEnvironment
    - Miuvig
    - PlantAssociated
    - Sediment
    - Soil
    - SymbiontAssociated
    - WastewaterSludge
    - Water
    range: string
    required: true
    pattern: '[^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{free_text}'
  samp_taxon_id:
    name: samp_taxon_id
    description: placeholder description; linter will ignore this
    title: taxonomy ID of DNA sample
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0001320
    alias: samp_taxon_id
    owner: MigsBa
    domain_of:
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    range: string
    required: true
    pattern: '[^s\|][^\r\n\t\|]* [NCBITaxon:[0-9]+]'
    structured_pattern:
      syntax: '{term_label} [{ncbi_term_id}]'
  seq_meth:
    name: seq_meth
    description: placeholder description; linter will ignore this
    title: sequencing method
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000050
    alias: seq_meth
    owner: MigsBa
    domain_of:
    - Agriculture
    - Checklist
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    range: string
    required: true
  num_replicons:
    name: num_replicons
    description: placeholder description; linter will ignore this
    title: number of replicons
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000022
    alias: num_replicons
    owner: MigsBa
    domain_of:
    - Checklist
    - MigsBa
    - MigsEu
    - MigsVi
    range: integer
    required: true
  ref_biomaterial:
    name: ref_biomaterial
    description: placeholder description; linter will ignore this
    title: reference for biomaterial
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000025
    alias: ref_biomaterial
    owner: MigsBa
    domain_of:
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - Mims
    - Misag
    - Miuvig
    range: string
    required: true
    pattern: (10.\d{4,9}/[-._;()/:a-zA-Z0-9]+)|(PMID:(\d{7,8}))|((?:https?://)?(?:www\.)?[\w-]+(?:\.[\w-]+)+[\w.,@?^=%&:/~+#-]*[\w@?^=%&/~+#-])
    structured_pattern:
      syntax: ({DOI})|({PMID})|({URL})
  bin_param:
    name: bin_param
    description: placeholder description; linter will ignore this
    title: binning parameters
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000077
    alias: bin_param
    owner: MigsBa
    domain_of:
    - Checklist
    - Mimag
    - Miuvig
    range: string
  bin_software:
    name: bin_software
    description: placeholder description; linter will ignore this
    title: binning software
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000078
    alias: bin_software
    owner: MigsBa
    domain_of:
    - Checklist
    - Mimag
    - Miuvig
    range: string
  chimera_check:
    name: chimera_check
    description: placeholder description; linter will ignore this
    title: chimera check software
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000052
    alias: chimera_check
    owner: MigsBa
    domain_of:
    - Agriculture
    - Checklist
    - MimarksC
    - MimarksS
    range: string
  compl_appr:
    name: compl_appr
    description: placeholder description; linter will ignore this
    title: completeness approach
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000071
    alias: compl_appr
    owner: MigsBa
    domain_of:
    - Checklist
    - Mimag
    - Misag
    - Miuvig
    range: string
  contam_score:
    name: contam_score
    description: placeholder description; linter will ignore this
    title: contamination score
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000072
    alias: contam_score
    owner: MigsBa
    domain_of:
    - Checklist
    - Mimag
    - Misag
    range: string
  contam_screen_input:
    name: contam_screen_input
    description: placeholder description; linter will ignore this
    title: contamination screening input
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000005
    alias: contam_screen_input
    owner: MigsBa
    domain_of:
    - Checklist
    - Mimag
    - Misag
    range: string
  contam_screen_param:
    name: contam_screen_param
    description: placeholder description; linter will ignore this
    title: contamination screening parameters
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000073
    alias: contam_screen_param
    owner: MigsBa
    domain_of:
    - Checklist
    - Mimag
    - Misag
    range: string
  decontam_software:
    name: decontam_software
    description: placeholder description; linter will ignore this
    title: decontamination software
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000074
    alias: decontam_software
    owner: MigsBa
    domain_of:
    - Checklist
    - Mimag
    - Misag
    range: string
  detec_type:
    name: detec_type
    description: placeholder description; linter will ignore this
    title: detection type
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000084
    alias: detec_type
    owner: MigsBa
    domain_of:
    - Checklist
    - Miuvig
    range: string
  host_pred_appr:
    name: host_pred_appr
    description: placeholder description; linter will ignore this
    title: host prediction approach
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000088
    alias: host_pred_appr
    owner: MigsBa
    domain_of:
    - Checklist
    - Miuvig
    range: string
  host_pred_est_acc:
    name: host_pred_est_acc
    description: placeholder description; linter will ignore this
    title: host prediction estimated accuracy
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000089
    alias: host_pred_est_acc
    owner: MigsBa
    domain_of:
    - Checklist
    - Miuvig
    range: string
    pattern: '[^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{free_text}'
  mag_cov_software:
    name: mag_cov_software
    description: placeholder description; linter will ignore this
    title: MAG coverage software
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000080
    alias: mag_cov_software
    owner: MigsBa
    domain_of:
    - Checklist
    - Mimag
    - Miuvig
    range: string
  mid:
    name: mid
    description: placeholder description; linter will ignore this
    title: multiplex identifiers
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000047
    alias: mid
    owner: MigsBa
    domain_of:
    - Agriculture
    - Checklist
    - Mimag
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    range: string
    pattern: '[ACGT]+'
    structured_pattern:
      syntax: '{dna}'
  otu_class_appr:
    name: otu_class_appr
    description: placeholder description; linter will ignore this
    title: OTU classification approach
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000085
    alias: otu_class_appr
    owner: MigsBa
    domain_of:
    - Checklist
    - Miuvig
    range: string
  otu_db:
    name: otu_db
    description: placeholder description; linter will ignore this
    title: OTU database
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000087
    alias: otu_db
    owner: MigsBa
    domain_of:
    - Checklist
    - Miuvig
    range: string
  otu_seq_comp_appr:
    name: otu_seq_comp_appr
    description: placeholder description; linter will ignore this
    title: OTU sequence comparison approach
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000086
    alias: otu_seq_comp_appr
    owner: MigsBa
    domain_of:
    - Checklist
    - Miuvig
    range: string
    pattern: '[^s\|][^\r\n\t\|]*;[^s\|][^\r\n\t\|]*;[^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{software};{version};{parameters}'
  pcr_cond:
    name: pcr_cond
    description: placeholder description; linter will ignore this
    title: pcr conditions
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000049
    alias: pcr_cond
    owner: MigsBa
    domain_of:
    - Agriculture
    - Checklist
    - MimarksC
    - MimarksS
    range: string
  pcr_primers:
    name: pcr_primers
    description: placeholder description; linter will ignore this
    title: pcr primers
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000046
    alias: pcr_primers
    owner: MigsBa
    domain_of:
    - Agriculture
    - Checklist
    - MimarksC
    - MimarksS
    range: string
  ploidy:
    name: ploidy
    description: placeholder description; linter will ignore this
    title: ploidy
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000021
    alias: ploidy
    owner: MigsBa
    domain_of:
    - Checklist
    - MigsEu
    range: string
    pattern: '[^s\|][^\r\n\t\|]* [[a-zA-Z]+:[0-9]+]'
    structured_pattern:
      syntax: '{term_label} [{term_id}]'
  pred_genome_struc:
    name: pred_genome_struc
    description: placeholder description; linter will ignore this
    title: predicted genome structure
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000083
    alias: pred_genome_struc
    owner: MigsBa
    domain_of:
    - Checklist
    - Miuvig
    range: string
  pred_genome_type:
    name: pred_genome_type
    description: placeholder description; linter will ignore this
    title: predicted genome type
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000082
    alias: pred_genome_type
    owner: MigsBa
    domain_of:
    - Checklist
    - Miuvig
    range: string
  propagation:
    name: propagation
    description: placeholder description; linter will ignore this
    title: propagation
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000033
    alias: propagation
    owner: MigsBa
    domain_of:
    - Checklist
    - MigsEu
    - MigsPl
    - MigsVi
    range: string
    pattern: '[^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{free_text}'
  reassembly_bin:
    name: reassembly_bin
    description: placeholder description; linter will ignore this
    title: reassembly post binning
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000079
    alias: reassembly_bin
    owner: MigsBa
    domain_of:
    - Checklist
    - Mimag
    - Miuvig
    range: boolean
  seq_quality_check:
    name: seq_quality_check
    description: placeholder description; linter will ignore this
    title: sequence quality check
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000051
    alias: seq_quality_check
    owner: MigsBa
    domain_of:
    - Agriculture
    - Checklist
    - MimarksC
    - MimarksS
    range: string
  single_cell_lysis_appr:
    name: single_cell_lysis_appr
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    alias: single_cell_lysis_appr
    owner: MigsBa
    domain_of:
    - Checklist
    - Misag
    - Miuvig
    range: string
  single_cell_lysis_prot:
    name: single_cell_lysis_prot
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    alias: single_cell_lysis_prot
    owner: MigsBa
    domain_of:
    - Checklist
    - Misag
    - Miuvig
    range: string
  size_frac:
    name: size_frac
    description: placeholder description; linter will ignore this
    title: size fraction selected
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000017
    alias: size_frac
    owner: MigsBa
    domain_of:
    - Checklist
    - Mimag
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    range: string
    pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)?-[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)?
      [^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{float}-{float} {unit}'
  sort_tech:
    name: sort_tech
    description: placeholder description; linter will ignore this
    title: sorting technology
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000075
    alias: sort_tech
    owner: MigsBa
    domain_of:
    - Checklist
    - Misag
    - Miuvig
    range: string
  source_uvig:
    name: source_uvig
    description: placeholder description; linter will ignore this
    title: source of UViGs
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000035
    alias: source_uvig
    owner: MigsBa
    domain_of:
    - Checklist
    - Miuvig
    range: string
  target_gene:
    name: target_gene
    description: placeholder description; linter will ignore this
    title: target gene
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000044
    alias: target_gene
    owner: MigsBa
    domain_of:
    - Agriculture
    - Checklist
    - MimarksC
    - MimarksS
    range: string
    pattern: '[^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{free_text}'
  target_subfragment:
    name: target_subfragment
    description: placeholder description; linter will ignore this
    title: target subfragment
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000045
    alias: target_subfragment
    owner: MigsBa
    domain_of:
    - Agriculture
    - Checklist
    - MimarksC
    - MimarksS
    range: string
    pattern: '[^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{free_text}'
  trna_ext_software:
    name: trna_ext_software
    description: placeholder description; linter will ignore this
    title: tRNA extraction software
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000068
    alias: trna_ext_software
    owner: MigsBa
    domain_of:
    - Checklist
    - Mimag
    - Misag
    - Miuvig
    range: string
    pattern: '[^s\|][^\r\n\t\|]*;[^s\|][^\r\n\t\|]*;[^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{software};{version};{parameters}'
  trnas:
    name: trnas
    description: placeholder description; linter will ignore this
    title: number of standard tRNAs extracted
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000067
    alias: trnas
    owner: MigsBa
    domain_of:
    - Checklist
    - Mimag
    - Misag
    - Miuvig
    range: integer
    minimum_value: 0
    maximum_value: 21
  vir_ident_software:
    name: vir_ident_software
    description: placeholder description; linter will ignore this
    title: viral identification software
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000081
    alias: vir_ident_software
    owner: MigsBa
    domain_of:
    - Checklist
    - Miuvig
    range: string
    pattern: '[^s\|][^\r\n\t\|]*;[^s\|][^\r\n\t\|]*;[^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{software};{version};{parameters}'
  virus_enrich_appr:
    name: virus_enrich_appr
    description: placeholder description; linter will ignore this
    title: virus enrichment approach
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000036
    alias: virus_enrich_appr
    owner: MigsBa
    domain_of:
    - Checklist
    - MigsVi
    - Miuvig
    range: string
  wga_amp_appr:
    name: wga_amp_appr
    description: placeholder description; linter will ignore this
    title: WGA amplification approach
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000055
    alias: wga_amp_appr
    owner: MigsBa
    domain_of:
    - Checklist
    - Misag
    - Miuvig
    range: string
  wga_amp_kit:
    name: wga_amp_kit
    description: placeholder description; linter will ignore this
    title: WGA amplification kit
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000006
    alias: wga_amp_kit
    owner: MigsBa
    domain_of:
    - Checklist
    - Misag
    - Miuvig
    range: string
    pattern: '[^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{free_text}'
class_uri: MIXS:0010003