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Class: MicrobialMatBiofilm

placeholder description; linter will ignore this

URI: MIXS:0016008

classDiagram class MicrobialMatBiofilm EnvironmentalPackage <|-- MicrobialMatBiofilm MicrobialMatBiofilm : alkalinity MicrobialMatBiofilm : alkyl_diethers MicrobialMatBiofilm : aminopept_act MicrobialMatBiofilm : ammonium MicrobialMatBiofilm : bacteria_carb_prod MicrobialMatBiofilm : biomass MicrobialMatBiofilm : bishomohopanol MicrobialMatBiofilm : bromide MicrobialMatBiofilm : calcium MicrobialMatBiofilm : carb_nitro_ratio MicrobialMatBiofilm : chem_administration MicrobialMatBiofilm : chloride MicrobialMatBiofilm : chlorophyll MicrobialMatBiofilm : diether_lipids MicrobialMatBiofilm : diss_carb_dioxide MicrobialMatBiofilm : diss_hydrogen MicrobialMatBiofilm : diss_inorg_carb MicrobialMatBiofilm : diss_org_carb MicrobialMatBiofilm : diss_org_nitro MicrobialMatBiofilm : diss_oxygen MicrobialMatBiofilm : elev MicrobialMatBiofilm : glucosidase_act MicrobialMatBiofilm : magnesium MicrobialMatBiofilm : mean_frict_vel MicrobialMatBiofilm : mean_peak_frict_vel MicrobialMatBiofilm : methane MicrobialMatBiofilm : misc_param MicrobialMatBiofilm : n_alkanes MicrobialMatBiofilm : nitrate MicrobialMatBiofilm : nitrite MicrobialMatBiofilm : nitro MicrobialMatBiofilm : org_carb MicrobialMatBiofilm : org_matter MicrobialMatBiofilm : org_nitro MicrobialMatBiofilm : organism_count MicrobialMatBiofilm : oxy_stat_samp MicrobialMatBiofilm --|> OXY_STAT_SAMP_ENUM : oxy_stat_samp MicrobialMatBiofilm : part_org_carb MicrobialMatBiofilm : perturbation MicrobialMatBiofilm : petroleum_hydrocarb MicrobialMatBiofilm : ph MicrobialMatBiofilm : phaeopigments MicrobialMatBiofilm : phosphate MicrobialMatBiofilm : phosplipid_fatt_acid MicrobialMatBiofilm : potassium MicrobialMatBiofilm : pressure MicrobialMatBiofilm : project_name MicrobialMatBiofilm : redox_potential MicrobialMatBiofilm : salinity MicrobialMatBiofilm : samp_store_dur MicrobialMatBiofilm : samp_store_loc MicrobialMatBiofilm : samp_store_temp MicrobialMatBiofilm : samp_vol_we_dna_ext MicrobialMatBiofilm : silicate MicrobialMatBiofilm : sodium MicrobialMatBiofilm : sulfate MicrobialMatBiofilm : sulfide MicrobialMatBiofilm : temp MicrobialMatBiofilm : tot_carb MicrobialMatBiofilm : tot_org_carb MicrobialMatBiofilm : turbidity MicrobialMatBiofilm : water_content

Inheritance

Slots

Name Cardinality and Range Description Inheritance
elev 0..1 recommended
String		 placeholder description; linter will ignore this direct
alkalinity 0..1
String		 placeholder description; linter will ignore this direct
alkyl_diethers 0..1
String		 placeholder description; linter will ignore this direct
aminopept_act 0..1
String		 placeholder description; linter will ignore this direct
ammonium 0..1
String		 placeholder description; linter will ignore this direct
bacteria_carb_prod 0..1
String		 placeholder description; linter will ignore this direct
biomass 0..1
String		 placeholder description; linter will ignore this direct
bishomohopanol 0..1
String		 placeholder description; linter will ignore this direct
bromide 0..1
String		 placeholder description; linter will ignore this direct
calcium 0..1
String		 placeholder description; linter will ignore this direct
carb_nitro_ratio 0..1
Float		 placeholder description; linter will ignore this direct
chem_administration 0..1
String		 placeholder description; linter will ignore this direct
chloride 0..1
String		 placeholder description; linter will ignore this direct
chlorophyll 0..1
String		 placeholder description; linter will ignore this direct
diether_lipids 0..1
String		 placeholder description; linter will ignore this direct
diss_carb_dioxide 0..1
String		 placeholder description; linter will ignore this direct
diss_hydrogen 0..1
String		 placeholder description; linter will ignore this direct
diss_inorg_carb 0..1
String		 placeholder description; linter will ignore this direct
diss_org_carb 0..1
String		 placeholder description; linter will ignore this direct
diss_org_nitro 0..1
String		 placeholder description; linter will ignore this direct
diss_oxygen 0..1
String		 placeholder description; linter will ignore this direct
glucosidase_act 0..1
String		 placeholder description; linter will ignore this direct
magnesium 0..1
String		 placeholder description; linter will ignore this direct
mean_frict_vel 0..1
String		 placeholder description; linter will ignore this direct
mean_peak_frict_vel 0..1
String		 placeholder description; linter will ignore this direct
methane 0..1
String		 placeholder description; linter will ignore this direct
misc_param 0..1
String		 placeholder description; linter will ignore this direct
n_alkanes 0..1
String		 placeholder description; linter will ignore this direct
nitrate 0..1
String		 placeholder description; linter will ignore this direct
nitrite 0..1
String		 placeholder description; linter will ignore this direct
nitro 0..1
String		 placeholder description; linter will ignore this direct
org_carb 0..1
String		 placeholder description; linter will ignore this direct
org_matter 0..1
String		 placeholder description; linter will ignore this direct
org_nitro 0..1
String		 placeholder description; linter will ignore this direct
organism_count 0..1
String		 placeholder description; linter will ignore this direct
oxy_stat_samp 0..1
OXYSTATSAMPENUM		 placeholder description; linter will ignore this direct
part_org_carb 0..1
String		 placeholder description; linter will ignore this direct
perturbation 0..1
String		 placeholder description; linter will ignore this direct
petroleum_hydrocarb 0..1
String		 placeholder description; linter will ignore this direct
ph 0..1
Float		 placeholder description; linter will ignore this direct
phaeopigments 0..1
String		 placeholder description; linter will ignore this direct
phosphate 0..1
String		 placeholder description; linter will ignore this direct
phosplipid_fatt_acid 0..1
String		 placeholder description; linter will ignore this direct
potassium 0..1
String		 placeholder description; linter will ignore this direct
pressure 0..1
String		 placeholder description; linter will ignore this direct
redox_potential 0..1
String		 placeholder description; linter will ignore this direct
salinity 0..1
String		 placeholder description; linter will ignore this direct
samp_store_dur 0..1
String		 placeholder description; linter will ignore this direct
samp_store_loc 0..1
String		 placeholder description; linter will ignore this direct
samp_store_temp 0..1
String		 placeholder description; linter will ignore this direct
samp_vol_we_dna_ext 0..1
String		 placeholder description; linter will ignore this direct
silicate 0..1
String		 placeholder description; linter will ignore this direct
sodium 0..1
String		 placeholder description; linter will ignore this direct
sulfate 0..1
String		 placeholder description; linter will ignore this direct
sulfide 0..1
String		 placeholder description; linter will ignore this direct
temp 0..1
String		 placeholder description; linter will ignore this direct
tot_carb 0..1
String		 placeholder description; linter will ignore this direct
tot_org_carb 0..1
String		 placeholder description; linter will ignore this direct
turbidity 0..1
String		 placeholder description; linter will ignore this direct
water_content 0..1
String		 placeholder description; linter will ignore this direct
project_name 1..1
String		 placeholder description; linter will ignore this direct

Identifier and Mapping Information

Schema Source

  • from schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first

Mappings

Mapping Type Mapped Value
self MIXS:0016008
native MIXS:MicrobialMatBiofilm

LinkML Source

Direct

name: MicrobialMatBiofilm
description: placeholder description; linter will ignore this
title: microbial mat/biofilm
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
is_a: EnvironmentalPackage
slots:
- elev
- alkalinity
- alkyl_diethers
- aminopept_act
- ammonium
- bacteria_carb_prod
- biomass
- bishomohopanol
- bromide
- calcium
- carb_nitro_ratio
- chem_administration
- chloride
- chlorophyll
- diether_lipids
- diss_carb_dioxide
- diss_hydrogen
- diss_inorg_carb
- diss_org_carb
- diss_org_nitro
- diss_oxygen
- glucosidase_act
- magnesium
- mean_frict_vel
- mean_peak_frict_vel
- methane
- misc_param
- n_alkanes
- nitrate
- nitrite
- nitro
- org_carb
- org_matter
- org_nitro
- organism_count
- oxy_stat_samp
- part_org_carb
- perturbation
- petroleum_hydrocarb
- ph
- phaeopigments
- phosphate
- phosplipid_fatt_acid
- potassium
- pressure
- redox_potential
- salinity
- samp_store_dur
- samp_store_loc
- samp_store_temp
- samp_vol_we_dna_ext
- silicate
- sodium
- sulfate
- sulfide
- temp
- tot_carb
- tot_org_carb
- turbidity
- water_content
- project_name
slot_usage:
  alkalinity:
    name: alkalinity
    domain_of:
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - Sediment
    - WastewaterSludge
    - Water
  alkyl_diethers:
    name: alkyl_diethers
    domain_of:
    - MicrobialMatBiofilm
    - Sediment
    - Water
  aminopept_act:
    name: aminopept_act
    domain_of:
    - MicrobialMatBiofilm
    - Sediment
    - Water
  ammonium:
    name: ammonium
    domain_of:
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - Sediment
    - Water
  bacteria_carb_prod:
    name: bacteria_carb_prod
    domain_of:
    - MicrobialMatBiofilm
    - Sediment
    - Water
  biomass:
    name: biomass
    domain_of:
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - Sediment
    - Water
  bishomohopanol:
    name: bishomohopanol
    domain_of:
    - MicrobialMatBiofilm
    - Sediment
    - Water
  bromide:
    name: bromide
    domain_of:
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - Sediment
    - Water
  calcium:
    name: calcium
    domain_of:
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - Sediment
    - Water
  carb_nitro_ratio:
    name: carb_nitro_ratio
    domain_of:
    - MicrobialMatBiofilm
    - Sediment
    - Water
  chem_administration:
    name: chem_administration
    domain_of:
    - Agriculture
    - Air
    - FoodFarmEnvironment
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - PlantAssociated
    - Sediment
    - SymbiontAssociated
    - WastewaterSludge
    - Water
  chloride:
    name: chloride
    domain_of:
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - Sediment
    - Water
  chlorophyll:
    name: chlorophyll
    domain_of:
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - Sediment
    - Water
  diether_lipids:
    name: diether_lipids
    domain_of:
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - Sediment
    - Water
  diss_carb_dioxide:
    name: diss_carb_dioxide
    domain_of:
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - Sediment
    - Water
  diss_hydrogen:
    name: diss_hydrogen
    domain_of:
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - Sediment
    - Water
  diss_inorg_carb:
    name: diss_inorg_carb
    domain_of:
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - Sediment
    - Water
  diss_org_carb:
    name: diss_org_carb
    domain_of:
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - Sediment
    - Water
  diss_org_nitro:
    name: diss_org_nitro
    domain_of:
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - Sediment
    - Water
  diss_oxygen:
    name: diss_oxygen
    domain_of:
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - Sediment
    - Water
  elev:
    name: elev
    domain_of:
    - Agriculture
    - Air
    - Checklist
    - HostAssociated
    - HydrocarbonResourcesCores
    - MicrobialMatBiofilm
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - MiscellaneousNaturalOrArtificialEnvironment
    - Miuvig
    - PlantAssociated
    - Sediment
    - Soil
    - SymbiontAssociated
    - Water
    recommended: true
  glucosidase_act:
    name: glucosidase_act
    domain_of:
    - MicrobialMatBiofilm
    - Sediment
    - Water
  magnesium:
    name: magnesium
    domain_of:
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - Sediment
    - Water
  mean_frict_vel:
    name: mean_frict_vel
    domain_of:
    - MicrobialMatBiofilm
    - Sediment
    - Water
  mean_peak_frict_vel:
    name: mean_peak_frict_vel
    domain_of:
    - MicrobialMatBiofilm
    - Sediment
    - Water
  methane:
    name: methane
    domain_of:
    - Air
    - MicrobialMatBiofilm
    - Sediment
  misc_param:
    name: misc_param
    domain_of:
    - Agriculture
    - Air
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - PlantAssociated
    - Sediment
    - Soil
    - SymbiontAssociated
    - WastewaterSludge
    - Water
  n_alkanes:
    name: n_alkanes
    domain_of:
    - MicrobialMatBiofilm
    - Sediment
    - Water
  nitrate:
    name: nitrate
    domain_of:
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - Sediment
    - WastewaterSludge
    - Water
  nitrite:
    name: nitrite
    domain_of:
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - Sediment
    - Water
  nitro:
    name: nitro
    domain_of:
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - Sediment
    - Water
  org_carb:
    name: org_carb
    domain_of:
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - Sediment
    - Water
  org_matter:
    name: org_matter
    domain_of:
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - Sediment
    - Soil
    - Water
  org_nitro:
    name: org_nitro
    domain_of:
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - Sediment
    - Soil
    - Water
  organism_count:
    name: organism_count
    domain_of:
    - Agriculture
    - Air
    - BuiltEnvironment
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - PlantAssociated
    - Sediment
    - SymbiontAssociated
    - WastewaterSludge
    - Water
  oxy_stat_samp:
    name: oxy_stat_samp
    domain_of:
    - Agriculture
    - Air
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - PlantAssociated
    - Sediment
    - SymbiontAssociated
    - WastewaterSludge
    - Water
  part_org_carb:
    name: part_org_carb
    domain_of:
    - MicrobialMatBiofilm
    - Sediment
    - Water
  perturbation:
    name: perturbation
    domain_of:
    - Agriculture
    - Air
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodHumanFoods
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - PlantAssociated
    - Sediment
    - SymbiontAssociated
    - WastewaterSludge
    - Water
  petroleum_hydrocarb:
    name: petroleum_hydrocarb
    domain_of:
    - MicrobialMatBiofilm
    - Sediment
    - Water
  ph:
    name: ph
    domain_of:
    - FoodFarmEnvironment
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - Sediment
    - Soil
    - WastewaterSludge
    - Water
  phaeopigments:
    name: phaeopigments
    domain_of:
    - MicrobialMatBiofilm
    - Sediment
    - Water
  phosphate:
    name: phosphate
    domain_of:
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - Sediment
    - WastewaterSludge
    - Water
  phosplipid_fatt_acid:
    name: phosplipid_fatt_acid
    domain_of:
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - Sediment
    - Water
  potassium:
    name: potassium
    domain_of:
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - Sediment
    - Water
  pressure:
    name: pressure
    domain_of:
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - Sediment
    - Water
  project_name:
    name: project_name
    domain_of:
    - Air
    - BuiltEnvironment
    - Checklist
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - MiscellaneousNaturalOrArtificialEnvironment
    - Miuvig
    - PlantAssociated
    - Sediment
    - Soil
    - SymbiontAssociated
    - WastewaterSludge
    - Water
    required: true
  redox_potential:
    name: redox_potential
    domain_of:
    - MicrobialMatBiofilm
    - Sediment
    - Water
  salinity:
    name: salinity
    domain_of:
    - Air
    - FoodFarmEnvironment
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - PlantAssociated
    - Sediment
    - WastewaterSludge
    - Water
  samp_store_dur:
    name: samp_store_dur
    domain_of:
    - Agriculture
    - Air
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - PlantAssociated
    - Sediment
    - SymbiontAssociated
    - WastewaterSludge
    - Water
  samp_store_loc:
    name: samp_store_loc
    domain_of:
    - Agriculture
    - Air
    - FoodAnimalAndAnimalFeed
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - PlantAssociated
    - Sediment
    - SymbiontAssociated
    - WastewaterSludge
    - Water
  samp_store_temp:
    name: samp_store_temp
    domain_of:
    - Agriculture
    - Air
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - PlantAssociated
    - Sediment
    - SymbiontAssociated
    - WastewaterSludge
    - Water
  samp_vol_we_dna_ext:
    name: samp_vol_we_dna_ext
    domain_of:
    - Agriculture
    - Air
    - Checklist
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - MiscellaneousNaturalOrArtificialEnvironment
    - Miuvig
    - PlantAssociated
    - Sediment
    - Soil
    - SymbiontAssociated
    - WastewaterSludge
    - Water
  silicate:
    name: silicate
    domain_of:
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - Sediment
    - Water
  sodium:
    name: sodium
    domain_of:
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - Sediment
    - WastewaterSludge
    - Water
  sulfate:
    name: sulfate
    domain_of:
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - Sediment
    - Water
  sulfide:
    name: sulfide
    domain_of:
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - Sediment
    - Water
  temp:
    name: temp
    domain_of:
    - Agriculture
    - Air
    - Checklist
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodHumanFoods
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - MiscellaneousNaturalOrArtificialEnvironment
    - Miuvig
    - PlantAssociated
    - Sediment
    - Soil
    - SymbiontAssociated
    - WastewaterSludge
    - Water
  tot_carb:
    name: tot_carb
    domain_of:
    - Agriculture
    - MicrobialMatBiofilm
    - Sediment
  tot_org_carb:
    name: tot_org_carb
    domain_of:
    - Agriculture
    - FoodFarmEnvironment
    - MicrobialMatBiofilm
    - Sediment
    - Soil
  turbidity:
    name: turbidity
    domain_of:
    - FoodFarmEnvironment
    - MicrobialMatBiofilm
    - Sediment
    - Water
  water_content:
    name: water_content
    domain_of:
    - MicrobialMatBiofilm
    - Sediment
    - Soil
class_uri: MIXS:0016008

Induced

name: MicrobialMatBiofilm
description: placeholder description; linter will ignore this
title: microbial mat/biofilm
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
is_a: EnvironmentalPackage
slot_usage:
  alkalinity:
    name: alkalinity
    domain_of:
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - Sediment
    - WastewaterSludge
    - Water
  alkyl_diethers:
    name: alkyl_diethers
    domain_of:
    - MicrobialMatBiofilm
    - Sediment
    - Water
  aminopept_act:
    name: aminopept_act
    domain_of:
    - MicrobialMatBiofilm
    - Sediment
    - Water
  ammonium:
    name: ammonium
    domain_of:
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - Sediment
    - Water
  bacteria_carb_prod:
    name: bacteria_carb_prod
    domain_of:
    - MicrobialMatBiofilm
    - Sediment
    - Water
  biomass:
    name: biomass
    domain_of:
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - Sediment
    - Water
  bishomohopanol:
    name: bishomohopanol
    domain_of:
    - MicrobialMatBiofilm
    - Sediment
    - Water
  bromide:
    name: bromide
    domain_of:
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - Sediment
    - Water
  calcium:
    name: calcium
    domain_of:
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - Sediment
    - Water
  carb_nitro_ratio:
    name: carb_nitro_ratio
    domain_of:
    - MicrobialMatBiofilm
    - Sediment
    - Water
  chem_administration:
    name: chem_administration
    domain_of:
    - Agriculture
    - Air
    - FoodFarmEnvironment
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - PlantAssociated
    - Sediment
    - SymbiontAssociated
    - WastewaterSludge
    - Water
  chloride:
    name: chloride
    domain_of:
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - Sediment
    - Water
  chlorophyll:
    name: chlorophyll
    domain_of:
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - Sediment
    - Water
  diether_lipids:
    name: diether_lipids
    domain_of:
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - Sediment
    - Water
  diss_carb_dioxide:
    name: diss_carb_dioxide
    domain_of:
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - Sediment
    - Water
  diss_hydrogen:
    name: diss_hydrogen
    domain_of:
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - Sediment
    - Water
  diss_inorg_carb:
    name: diss_inorg_carb
    domain_of:
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - Sediment
    - Water
  diss_org_carb:
    name: diss_org_carb
    domain_of:
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - Sediment
    - Water
  diss_org_nitro:
    name: diss_org_nitro
    domain_of:
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - Sediment
    - Water
  diss_oxygen:
    name: diss_oxygen
    domain_of:
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - Sediment
    - Water
  elev:
    name: elev
    domain_of:
    - Agriculture
    - Air
    - Checklist
    - HostAssociated
    - HydrocarbonResourcesCores
    - MicrobialMatBiofilm
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - MiscellaneousNaturalOrArtificialEnvironment
    - Miuvig
    - PlantAssociated
    - Sediment
    - Soil
    - SymbiontAssociated
    - Water
    recommended: true
  glucosidase_act:
    name: glucosidase_act
    domain_of:
    - MicrobialMatBiofilm
    - Sediment
    - Water
  magnesium:
    name: magnesium
    domain_of:
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - Sediment
    - Water
  mean_frict_vel:
    name: mean_frict_vel
    domain_of:
    - MicrobialMatBiofilm
    - Sediment
    - Water
  mean_peak_frict_vel:
    name: mean_peak_frict_vel
    domain_of:
    - MicrobialMatBiofilm
    - Sediment
    - Water
  methane:
    name: methane
    domain_of:
    - Air
    - MicrobialMatBiofilm
    - Sediment
  misc_param:
    name: misc_param
    domain_of:
    - Agriculture
    - Air
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - PlantAssociated
    - Sediment
    - Soil
    - SymbiontAssociated
    - WastewaterSludge
    - Water
  n_alkanes:
    name: n_alkanes
    domain_of:
    - MicrobialMatBiofilm
    - Sediment
    - Water
  nitrate:
    name: nitrate
    domain_of:
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - Sediment
    - WastewaterSludge
    - Water
  nitrite:
    name: nitrite
    domain_of:
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - Sediment
    - Water
  nitro:
    name: nitro
    domain_of:
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - Sediment
    - Water
  org_carb:
    name: org_carb
    domain_of:
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - Sediment
    - Water
  org_matter:
    name: org_matter
    domain_of:
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - Sediment
    - Soil
    - Water
  org_nitro:
    name: org_nitro
    domain_of:
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - Sediment
    - Soil
    - Water
  organism_count:
    name: organism_count
    domain_of:
    - Agriculture
    - Air
    - BuiltEnvironment
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - PlantAssociated
    - Sediment
    - SymbiontAssociated
    - WastewaterSludge
    - Water
  oxy_stat_samp:
    name: oxy_stat_samp
    domain_of:
    - Agriculture
    - Air
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - PlantAssociated
    - Sediment
    - SymbiontAssociated
    - WastewaterSludge
    - Water
  part_org_carb:
    name: part_org_carb
    domain_of:
    - MicrobialMatBiofilm
    - Sediment
    - Water
  perturbation:
    name: perturbation
    domain_of:
    - Agriculture
    - Air
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodHumanFoods
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - PlantAssociated
    - Sediment
    - SymbiontAssociated
    - WastewaterSludge
    - Water
  petroleum_hydrocarb:
    name: petroleum_hydrocarb
    domain_of:
    - MicrobialMatBiofilm
    - Sediment
    - Water
  ph:
    name: ph
    domain_of:
    - FoodFarmEnvironment
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - Sediment
    - Soil
    - WastewaterSludge
    - Water
  phaeopigments:
    name: phaeopigments
    domain_of:
    - MicrobialMatBiofilm
    - Sediment
    - Water
  phosphate:
    name: phosphate
    domain_of:
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - Sediment
    - WastewaterSludge
    - Water
  phosplipid_fatt_acid:
    name: phosplipid_fatt_acid
    domain_of:
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - Sediment
    - Water
  potassium:
    name: potassium
    domain_of:
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - Sediment
    - Water
  pressure:
    name: pressure
    domain_of:
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - Sediment
    - Water
  project_name:
    name: project_name
    domain_of:
    - Air
    - BuiltEnvironment
    - Checklist
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - MiscellaneousNaturalOrArtificialEnvironment
    - Miuvig
    - PlantAssociated
    - Sediment
    - Soil
    - SymbiontAssociated
    - WastewaterSludge
    - Water
    required: true
  redox_potential:
    name: redox_potential
    domain_of:
    - MicrobialMatBiofilm
    - Sediment
    - Water
  salinity:
    name: salinity
    domain_of:
    - Air
    - FoodFarmEnvironment
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - PlantAssociated
    - Sediment
    - WastewaterSludge
    - Water
  samp_store_dur:
    name: samp_store_dur
    domain_of:
    - Agriculture
    - Air
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - PlantAssociated
    - Sediment
    - SymbiontAssociated
    - WastewaterSludge
    - Water
  samp_store_loc:
    name: samp_store_loc
    domain_of:
    - Agriculture
    - Air
    - FoodAnimalAndAnimalFeed
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - PlantAssociated
    - Sediment
    - SymbiontAssociated
    - WastewaterSludge
    - Water
  samp_store_temp:
    name: samp_store_temp
    domain_of:
    - Agriculture
    - Air
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - PlantAssociated
    - Sediment
    - SymbiontAssociated
    - WastewaterSludge
    - Water
  samp_vol_we_dna_ext:
    name: samp_vol_we_dna_ext
    domain_of:
    - Agriculture
    - Air
    - Checklist
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - MiscellaneousNaturalOrArtificialEnvironment
    - Miuvig
    - PlantAssociated
    - Sediment
    - Soil
    - SymbiontAssociated
    - WastewaterSludge
    - Water
  silicate:
    name: silicate
    domain_of:
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - Sediment
    - Water
  sodium:
    name: sodium
    domain_of:
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - Sediment
    - WastewaterSludge
    - Water
  sulfate:
    name: sulfate
    domain_of:
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - Sediment
    - Water
  sulfide:
    name: sulfide
    domain_of:
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - Sediment
    - Water
  temp:
    name: temp
    domain_of:
    - Agriculture
    - Air
    - Checklist
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodHumanFoods
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - MiscellaneousNaturalOrArtificialEnvironment
    - Miuvig
    - PlantAssociated
    - Sediment
    - Soil
    - SymbiontAssociated
    - WastewaterSludge
    - Water
  tot_carb:
    name: tot_carb
    domain_of:
    - Agriculture
    - MicrobialMatBiofilm
    - Sediment
  tot_org_carb:
    name: tot_org_carb
    domain_of:
    - Agriculture
    - FoodFarmEnvironment
    - MicrobialMatBiofilm
    - Sediment
    - Soil
  turbidity:
    name: turbidity
    domain_of:
    - FoodFarmEnvironment
    - MicrobialMatBiofilm
    - Sediment
    - Water
  water_content:
    name: water_content
    domain_of:
    - MicrobialMatBiofilm
    - Sediment
    - Soil
attributes:
  elev:
    name: elev
    description: placeholder description; linter will ignore this
    title: elevation
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000093
    alias: elev
    owner: MicrobialMatBiofilm
    domain_of:
    - Agriculture
    - Air
    - Checklist
    - HostAssociated
    - HydrocarbonResourcesCores
    - MicrobialMatBiofilm
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - MiscellaneousNaturalOrArtificialEnvironment
    - Miuvig
    - PlantAssociated
    - Sediment
    - Soil
    - SymbiontAssociated
    - Water
    range: string
    recommended: true
    pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{float} {unit}'
  alkalinity:
    name: alkalinity
    description: placeholder description; linter will ignore this
    title: alkalinity
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000421
    alias: alkalinity
    owner: MicrobialMatBiofilm
    domain_of:
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - Sediment
    - WastewaterSludge
    - Water
    range: string
    pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{float} {unit}'
  alkyl_diethers:
    name: alkyl_diethers
    description: placeholder description; linter will ignore this
    title: alkyl diethers
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000490
    alias: alkyl_diethers
    owner: MicrobialMatBiofilm
    domain_of:
    - MicrobialMatBiofilm
    - Sediment
    - Water
    range: string
    pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{float} {unit}'
  aminopept_act:
    name: aminopept_act
    description: placeholder description; linter will ignore this
    title: aminopeptidase activity
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000172
    alias: aminopept_act
    owner: MicrobialMatBiofilm
    domain_of:
    - MicrobialMatBiofilm
    - Sediment
    - Water
    range: string
    pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{float} {unit}'
  ammonium:
    name: ammonium
    description: placeholder description; linter will ignore this
    title: ammonium
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000427
    alias: ammonium
    owner: MicrobialMatBiofilm
    domain_of:
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - Sediment
    - Water
    range: string
    pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{float} {unit}'
  bacteria_carb_prod:
    name: bacteria_carb_prod
    description: placeholder description; linter will ignore this
    title: bacterial carbon production
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000173
    alias: bacteria_carb_prod
    owner: MicrobialMatBiofilm
    domain_of:
    - MicrobialMatBiofilm
    - Sediment
    - Water
    range: string
    pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{float} {unit}'
  biomass:
    name: biomass
    description: placeholder description; linter will ignore this
    title: biomass
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000174
    alias: biomass
    owner: MicrobialMatBiofilm
    domain_of:
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - Sediment
    - Water
    range: string
    pattern: '[^s\|][^\r\n\t\|]*;[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{free_text};{float} {unit}'
  bishomohopanol:
    name: bishomohopanol
    description: placeholder description; linter will ignore this
    title: bishomohopanol
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000175
    alias: bishomohopanol
    owner: MicrobialMatBiofilm
    domain_of:
    - MicrobialMatBiofilm
    - Sediment
    - Water
    range: string
    pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{float} {unit}'
  bromide:
    name: bromide
    description: placeholder description; linter will ignore this
    title: bromide
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000176
    alias: bromide
    owner: MicrobialMatBiofilm
    domain_of:
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - Sediment
    - Water
    range: string
    pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{float} {unit}'
  calcium:
    name: calcium
    description: placeholder description; linter will ignore this
    title: calcium
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000432
    alias: calcium
    owner: MicrobialMatBiofilm
    domain_of:
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - Sediment
    - Water
    range: string
    pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{float} {unit}'
  carb_nitro_ratio:
    name: carb_nitro_ratio
    description: placeholder description; linter will ignore this
    title: carbon/nitrogen ratio
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000310
    alias: carb_nitro_ratio
    owner: MicrobialMatBiofilm
    domain_of:
    - MicrobialMatBiofilm
    - Sediment
    - Water
    range: float
  chem_administration:
    name: chem_administration
    description: placeholder description; linter will ignore this
    title: chemical administration
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000751
    alias: chem_administration
    owner: MicrobialMatBiofilm
    domain_of:
    - Agriculture
    - Air
    - FoodFarmEnvironment
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - PlantAssociated
    - Sediment
    - SymbiontAssociated
    - WastewaterSludge
    - Water
    range: string
  chloride:
    name: chloride
    description: placeholder description; linter will ignore this
    title: chloride
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000429
    alias: chloride
    owner: MicrobialMatBiofilm
    domain_of:
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - Sediment
    - Water
    range: string
    pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{float} {unit}'
  chlorophyll:
    name: chlorophyll
    description: placeholder description; linter will ignore this
    title: chlorophyll
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000177
    alias: chlorophyll
    owner: MicrobialMatBiofilm
    domain_of:
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - Sediment
    - Water
    range: string
    pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{float} {unit}'
  diether_lipids:
    name: diether_lipids
    description: placeholder description; linter will ignore this
    title: diether lipids
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000178
    alias: diether_lipids
    owner: MicrobialMatBiofilm
    domain_of:
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - Sediment
    - Water
    range: string
    pattern: (([^s\|][^\r\n\t\|]*;[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*)\|)*([^s\|][^\r\n\t\|]*;[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)?
      [^s\|][^\r\n\t\|]*)
    structured_pattern:
      syntax: (({free_text};{float} {unit})\|)*({free_text};{float} {unit})
  diss_carb_dioxide:
    name: diss_carb_dioxide
    description: placeholder description; linter will ignore this
    title: dissolved carbon dioxide
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000436
    alias: diss_carb_dioxide
    owner: MicrobialMatBiofilm
    domain_of:
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - Sediment
    - Water
    range: string
    pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{float} {unit}'
  diss_hydrogen:
    name: diss_hydrogen
    description: placeholder description; linter will ignore this
    title: dissolved hydrogen
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000179
    alias: diss_hydrogen
    owner: MicrobialMatBiofilm
    domain_of:
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - Sediment
    - Water
    range: string
    pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{float} {unit}'
  diss_inorg_carb:
    name: diss_inorg_carb
    description: placeholder description; linter will ignore this
    title: dissolved inorganic carbon
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000434
    alias: diss_inorg_carb
    owner: MicrobialMatBiofilm
    domain_of:
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - Sediment
    - Water
    range: string
    pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{float} {unit}'
  diss_org_carb:
    name: diss_org_carb
    description: placeholder description; linter will ignore this
    title: dissolved organic carbon
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000433
    alias: diss_org_carb
    owner: MicrobialMatBiofilm
    domain_of:
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - Sediment
    - Water
    range: string
    pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{float} {unit}'
  diss_org_nitro:
    name: diss_org_nitro
    description: placeholder description; linter will ignore this
    title: dissolved organic nitrogen
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000162
    alias: diss_org_nitro
    owner: MicrobialMatBiofilm
    domain_of:
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - Sediment
    - Water
    range: string
    pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{float} {unit}'
  diss_oxygen:
    name: diss_oxygen
    description: placeholder description; linter will ignore this
    title: dissolved oxygen
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000119
    alias: diss_oxygen
    owner: MicrobialMatBiofilm
    domain_of:
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - Sediment
    - Water
    range: string
    pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{float} {unit}'
  glucosidase_act:
    name: glucosidase_act
    description: placeholder description; linter will ignore this
    title: glucosidase activity
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000137
    alias: glucosidase_act
    owner: MicrobialMatBiofilm
    domain_of:
    - MicrobialMatBiofilm
    - Sediment
    - Water
    range: string
    pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{float} {unit}'
  magnesium:
    name: magnesium
    description: placeholder description; linter will ignore this
    title: magnesium
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000431
    alias: magnesium
    owner: MicrobialMatBiofilm
    domain_of:
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - Sediment
    - Water
    range: string
    pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{float} {unit}'
  mean_frict_vel:
    name: mean_frict_vel
    description: placeholder description; linter will ignore this
    title: mean friction velocity
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000498
    alias: mean_frict_vel
    owner: MicrobialMatBiofilm
    domain_of:
    - MicrobialMatBiofilm
    - Sediment
    - Water
    range: string
    pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{float} {unit}'
  mean_peak_frict_vel:
    name: mean_peak_frict_vel
    description: placeholder description; linter will ignore this
    title: mean peak friction velocity
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000502
    alias: mean_peak_frict_vel
    owner: MicrobialMatBiofilm
    domain_of:
    - MicrobialMatBiofilm
    - Sediment
    - Water
    range: string
    pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{float} {unit}'
  methane:
    name: methane
    description: placeholder description; linter will ignore this
    title: methane
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000101
    alias: methane
    owner: MicrobialMatBiofilm
    domain_of:
    - Air
    - MicrobialMatBiofilm
    - Sediment
    range: string
    pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{float} {unit}'
  misc_param:
    name: misc_param
    description: placeholder description; linter will ignore this
    title: miscellaneous parameter
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000752
    alias: misc_param
    owner: MicrobialMatBiofilm
    domain_of:
    - Agriculture
    - Air
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - PlantAssociated
    - Sediment
    - Soil
    - SymbiontAssociated
    - WastewaterSludge
    - Water
    range: string
    pattern: (([^s\|][^\r\n\t\|]*;[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*)\\|)*([^s\|][^\r\n\t\|]*;[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)?
      [^s\|][^\r\n\t\|]*)
    structured_pattern:
      syntax: (({free_text};{float} {unit})\\|)*({free_text};{float} {unit})
  n_alkanes:
    name: n_alkanes
    description: placeholder description; linter will ignore this
    title: n-alkanes
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000503
    alias: n_alkanes
    owner: MicrobialMatBiofilm
    domain_of:
    - MicrobialMatBiofilm
    - Sediment
    - Water
    range: string
    pattern: '[^s\|][^\r\n\t\|]*;[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{free_text};{float} {unit}'
  nitrate:
    name: nitrate
    description: placeholder description; linter will ignore this
    title: nitrate
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000425
    alias: nitrate
    owner: MicrobialMatBiofilm
    domain_of:
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - Sediment
    - WastewaterSludge
    - Water
    range: string
    pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{float} {unit}'
  nitrite:
    name: nitrite
    description: placeholder description; linter will ignore this
    title: nitrite
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000426
    alias: nitrite
    owner: MicrobialMatBiofilm
    domain_of:
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - Sediment
    - Water
    range: string
    pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{float} {unit}'
  nitro:
    name: nitro
    description: placeholder description; linter will ignore this
    title: nitrogen
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000504
    alias: nitro
    owner: MicrobialMatBiofilm
    domain_of:
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - Sediment
    - Water
    range: string
    pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{float} {unit}'
  org_carb:
    name: org_carb
    description: placeholder description; linter will ignore this
    title: organic carbon
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000508
    alias: org_carb
    owner: MicrobialMatBiofilm
    domain_of:
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - Sediment
    - Water
    range: string
    pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{float} {unit}'
  org_matter:
    name: org_matter
    description: placeholder description; linter will ignore this
    title: organic matter
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000204
    alias: org_matter
    owner: MicrobialMatBiofilm
    domain_of:
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - Sediment
    - Soil
    - Water
    range: string
    pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{float} {unit}'
  org_nitro:
    name: org_nitro
    description: placeholder description; linter will ignore this
    title: organic nitrogen
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000205
    alias: org_nitro
    owner: MicrobialMatBiofilm
    domain_of:
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - Sediment
    - Soil
    - Water
    range: string
    pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{float} {unit}'
  organism_count:
    name: organism_count
    description: placeholder description; linter will ignore this
    title: organism count
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000103
    alias: organism_count
    owner: MicrobialMatBiofilm
    domain_of:
    - Agriculture
    - Air
    - BuiltEnvironment
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - PlantAssociated
    - Sediment
    - SymbiontAssociated
    - WastewaterSludge
    - Water
    range: string
  oxy_stat_samp:
    name: oxy_stat_samp
    description: placeholder description; linter will ignore this
    title: oxygenation status of sample
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000753
    alias: oxy_stat_samp
    owner: MicrobialMatBiofilm
    domain_of:
    - Agriculture
    - Air
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - PlantAssociated
    - Sediment
    - SymbiontAssociated
    - WastewaterSludge
    - Water
    range: OXY_STAT_SAMP_ENUM
  part_org_carb:
    name: part_org_carb
    description: placeholder description; linter will ignore this
    title: particulate organic carbon
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000515
    alias: part_org_carb
    owner: MicrobialMatBiofilm
    domain_of:
    - MicrobialMatBiofilm
    - Sediment
    - Water
    range: string
    pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{float} {unit}'
  perturbation:
    name: perturbation
    description: placeholder description; linter will ignore this
    title: perturbation
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000754
    alias: perturbation
    owner: MicrobialMatBiofilm
    domain_of:
    - Agriculture
    - Air
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodHumanFoods
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - PlantAssociated
    - Sediment
    - SymbiontAssociated
    - WastewaterSludge
    - Water
    range: string
  petroleum_hydrocarb:
    name: petroleum_hydrocarb
    description: placeholder description; linter will ignore this
    title: petroleum hydrocarbon
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000516
    alias: petroleum_hydrocarb
    owner: MicrobialMatBiofilm
    domain_of:
    - MicrobialMatBiofilm
    - Sediment
    - Water
    range: string
    pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{float} {unit}'
  ph:
    name: ph
    description: placeholder description; linter will ignore this
    title: pH
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0001001
    alias: ph
    owner: MicrobialMatBiofilm
    domain_of:
    - FoodFarmEnvironment
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - Sediment
    - Soil
    - WastewaterSludge
    - Water
    range: float
  phaeopigments:
    name: phaeopigments
    description: placeholder description; linter will ignore this
    title: phaeopigments
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000180
    alias: phaeopigments
    owner: MicrobialMatBiofilm
    domain_of:
    - MicrobialMatBiofilm
    - Sediment
    - Water
    range: string
    pattern: (([^s\|][^\r\n\t\|]*;[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*)\|)*([^s\|][^\r\n\t\|]*;[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)?
      [^s\|][^\r\n\t\|]*)
    structured_pattern:
      syntax: (({free_text};{float} {unit})\|)*({free_text};{float} {unit})
  phosphate:
    name: phosphate
    description: placeholder description; linter will ignore this
    title: phosphate
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000505
    alias: phosphate
    owner: MicrobialMatBiofilm
    domain_of:
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - Sediment
    - WastewaterSludge
    - Water
    range: string
    pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{float} {unit}'
  phosplipid_fatt_acid:
    name: phosplipid_fatt_acid
    description: placeholder description; linter will ignore this
    title: phospholipid fatty acid
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000181
    alias: phosplipid_fatt_acid
    owner: MicrobialMatBiofilm
    domain_of:
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - Sediment
    - Water
    range: string
    pattern: (([^s\|][^\r\n\t\|]*)\|)*([^s\|][^\r\n\t\|]*)
    structured_pattern:
      syntax: (({free_text})\|)*({free_text})
  potassium:
    name: potassium
    description: placeholder description; linter will ignore this
    title: potassium
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000430
    alias: potassium
    owner: MicrobialMatBiofilm
    domain_of:
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - Sediment
    - Water
    range: string
    pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{float} {unit}'
  pressure:
    name: pressure
    description: placeholder description; linter will ignore this
    title: pressure
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000412
    alias: pressure
    owner: MicrobialMatBiofilm
    domain_of:
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - Sediment
    - Water
    range: string
    pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{float} {unit}'
  redox_potential:
    name: redox_potential
    description: placeholder description; linter will ignore this
    title: redox potential
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000182
    alias: redox_potential
    owner: MicrobialMatBiofilm
    domain_of:
    - MicrobialMatBiofilm
    - Sediment
    - Water
    range: string
    pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{float} {unit}'
  salinity:
    name: salinity
    description: placeholder description; linter will ignore this
    title: salinity
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000183
    alias: salinity
    owner: MicrobialMatBiofilm
    domain_of:
    - Air
    - FoodFarmEnvironment
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - PlantAssociated
    - Sediment
    - WastewaterSludge
    - Water
    range: string
    pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{float} {unit}'
  samp_store_dur:
    name: samp_store_dur
    description: placeholder description; linter will ignore this
    title: sample storage duration
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000116
    alias: samp_store_dur
    owner: MicrobialMatBiofilm
    domain_of:
    - Agriculture
    - Air
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - PlantAssociated
    - Sediment
    - SymbiontAssociated
    - WastewaterSludge
    - Water
    range: string
    pattern: P(?=\d+[YMWD])(\d+Y)?(\d+M)?(\d+W)?(\d+D)?(T(?=\d+[HMS])(\d+H)?(\d+M)?(\d+S)?)?
    structured_pattern:
      syntax: '{period}'
  samp_store_loc:
    name: samp_store_loc
    description: placeholder description; linter will ignore this
    title: sample storage location
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000755
    alias: samp_store_loc
    owner: MicrobialMatBiofilm
    domain_of:
    - Agriculture
    - Air
    - FoodAnimalAndAnimalFeed
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - PlantAssociated
    - Sediment
    - SymbiontAssociated
    - WastewaterSludge
    - Water
    range: string
    pattern: '[^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{free_text}'
  samp_store_temp:
    name: samp_store_temp
    description: placeholder description; linter will ignore this
    title: sample storage temperature
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000110
    alias: samp_store_temp
    owner: MicrobialMatBiofilm
    domain_of:
    - Agriculture
    - Air
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - PlantAssociated
    - Sediment
    - SymbiontAssociated
    - WastewaterSludge
    - Water
    range: string
    pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{float} {unit}'
  samp_vol_we_dna_ext:
    name: samp_vol_we_dna_ext
    description: placeholder description; linter will ignore this
    title: sample volume or weight for DNA extraction
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000111
    alias: samp_vol_we_dna_ext
    owner: MicrobialMatBiofilm
    domain_of:
    - Agriculture
    - Air
    - Checklist
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - MiscellaneousNaturalOrArtificialEnvironment
    - Miuvig
    - PlantAssociated
    - Sediment
    - Soil
    - SymbiontAssociated
    - WastewaterSludge
    - Water
    range: string
    pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{float} {unit}'
  silicate:
    name: silicate
    description: placeholder description; linter will ignore this
    title: silicate
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000184
    alias: silicate
    owner: MicrobialMatBiofilm
    domain_of:
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - Sediment
    - Water
    range: string
    pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{float} {unit}'
  sodium:
    name: sodium
    description: placeholder description; linter will ignore this
    title: sodium
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000428
    alias: sodium
    owner: MicrobialMatBiofilm
    domain_of:
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - Sediment
    - WastewaterSludge
    - Water
    range: string
    pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{float} {unit}'
  sulfate:
    name: sulfate
    description: placeholder description; linter will ignore this
    title: sulfate
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000423
    alias: sulfate
    owner: MicrobialMatBiofilm
    domain_of:
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - Sediment
    - Water
    range: string
    pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{float} {unit}'
  sulfide:
    name: sulfide
    description: placeholder description; linter will ignore this
    title: sulfide
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000424
    alias: sulfide
    owner: MicrobialMatBiofilm
    domain_of:
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - Sediment
    - Water
    range: string
    pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{float} {unit}'
  temp:
    name: temp
    description: placeholder description; linter will ignore this
    title: temperature
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000113
    alias: temp
    owner: MicrobialMatBiofilm
    domain_of:
    - Agriculture
    - Air
    - Checklist
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodHumanFoods
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - MiscellaneousNaturalOrArtificialEnvironment
    - Miuvig
    - PlantAssociated
    - Sediment
    - Soil
    - SymbiontAssociated
    - WastewaterSludge
    - Water
    range: string
    pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{float} {unit}'
  tot_carb:
    name: tot_carb
    description: placeholder description; linter will ignore this
    title: total carbon
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000525
    alias: tot_carb
    owner: MicrobialMatBiofilm
    domain_of:
    - Agriculture
    - MicrobialMatBiofilm
    - Sediment
    range: string
    pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{float} {unit}'
  tot_org_carb:
    name: tot_org_carb
    description: placeholder description; linter will ignore this
    title: total organic carbon
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000533
    alias: tot_org_carb
    owner: MicrobialMatBiofilm
    domain_of:
    - Agriculture
    - FoodFarmEnvironment
    - MicrobialMatBiofilm
    - Sediment
    - Soil
    range: string
  turbidity:
    name: turbidity
    description: placeholder description; linter will ignore this
    title: turbidity
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000191
    alias: turbidity
    owner: MicrobialMatBiofilm
    domain_of:
    - FoodFarmEnvironment
    - MicrobialMatBiofilm
    - Sediment
    - Water
    range: string
    pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{float} {unit}'
  water_content:
    name: water_content
    description: placeholder description; linter will ignore this
    title: water content
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000185
    alias: water_content
    owner: MicrobialMatBiofilm
    domain_of:
    - MicrobialMatBiofilm
    - Sediment
    - Soil
    range: string
    pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{float} {unit}'
  project_name:
    name: project_name
    description: placeholder description; linter will ignore this
    title: project name
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000092
    alias: project_name
    owner: MicrobialMatBiofilm
    domain_of:
    - Air
    - BuiltEnvironment
    - Checklist
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - MiscellaneousNaturalOrArtificialEnvironment
    - Miuvig
    - PlantAssociated
    - Sediment
    - Soil
    - SymbiontAssociated
    - WastewaterSludge
    - Water
    range: string
    required: true
    pattern: '[^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{free_text}'
class_uri: MIXS:0016008