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Class: HumanAssociated

placeholder description; linter will ignore this

URI: MIXS:0016003

classDiagram class HumanAssociated EnvironmentalPackage <|-- HumanAssociated HumanAssociated : amniotic_fluid_color HumanAssociated : blood_blood_disord HumanAssociated : chem_administration HumanAssociated : diet_last_six_month HumanAssociated : drug_usage HumanAssociated : ethnicity HumanAssociated : foetal_health_stat HumanAssociated : gestation_state HumanAssociated : host_age HumanAssociated : host_body_mass_index HumanAssociated : host_body_site HumanAssociated : host_body_temp HumanAssociated : host_diet HumanAssociated : host_disease_stat HumanAssociated : host_genotype HumanAssociated : host_height HumanAssociated : host_hiv_stat HumanAssociated : host_last_meal HumanAssociated : host_occupation HumanAssociated : host_phenotype HumanAssociated : host_pulse HumanAssociated : host_subject_id HumanAssociated : host_tot_mass HumanAssociated : ihmc_medication_code HumanAssociated : kidney_disord HumanAssociated : maternal_health_stat HumanAssociated : medic_hist_perform HumanAssociated : misc_param HumanAssociated : organism_count HumanAssociated : oxy_stat_samp HumanAssociated --|> OXY_STAT_SAMP_ENUM : oxy_stat_samp HumanAssociated : perturbation HumanAssociated : pet_farm_animal HumanAssociated : project_name HumanAssociated : pulmonary_disord HumanAssociated : salinity HumanAssociated : samp_store_dur HumanAssociated : samp_store_loc HumanAssociated : samp_store_temp HumanAssociated : samp_vol_we_dna_ext HumanAssociated : smoker HumanAssociated : study_complt_stat HumanAssociated : temp HumanAssociated : travel_out_six_month HumanAssociated : twin_sibling HumanAssociated : urine_collect_meth HumanAssociated : urogenit_tract_disor HumanAssociated : weight_loss_3_month

Inheritance

Slots

Name Cardinality and Range Description Inheritance
amniotic_fluid_color 0..1
String		 placeholder description; linter will ignore this direct
blood_blood_disord 0..1
String		 placeholder description; linter will ignore this direct
chem_administration 0..1
String		 placeholder description; linter will ignore this direct
diet_last_six_month 0..1
String		 placeholder description; linter will ignore this direct
drug_usage 0..1
String		 placeholder description; linter will ignore this direct
ethnicity 0..1
String		 placeholder description; linter will ignore this direct
foetal_health_stat 0..1
String		 placeholder description; linter will ignore this direct
gestation_state 0..1
String		 placeholder description; linter will ignore this direct
host_age 0..1
String		 placeholder description; linter will ignore this direct
host_body_mass_index 0..1
String		 placeholder description; linter will ignore this direct
host_body_site 0..1
String		 placeholder description; linter will ignore this direct
host_body_temp 0..1
String		 placeholder description; linter will ignore this direct
host_diet 0..1
String		 placeholder description; linter will ignore this direct
host_disease_stat 0..1
String		 placeholder description; linter will ignore this direct
host_genotype 0..1
String		 placeholder description; linter will ignore this direct
host_height 0..1
String		 placeholder description; linter will ignore this direct
host_hiv_stat 0..1
String		 placeholder description; linter will ignore this direct
host_last_meal 0..1
String		 placeholder description; linter will ignore this direct
host_occupation 0..1
String		 placeholder description; linter will ignore this direct
host_phenotype 0..1
String		 placeholder description; linter will ignore this direct
host_pulse 0..1
String		 placeholder description; linter will ignore this direct
host_subject_id 0..1
String		 placeholder description; linter will ignore this direct
host_tot_mass 0..1
String		 placeholder description; linter will ignore this direct
ihmc_medication_code 0..1
Integer		 placeholder description; linter will ignore this direct
kidney_disord 0..1
String		 placeholder description; linter will ignore this direct
maternal_health_stat 0..1
String		 placeholder description; linter will ignore this direct
medic_hist_perform 0..1
Boolean		 placeholder description; linter will ignore this direct
misc_param 0..1
String		 placeholder description; linter will ignore this direct
organism_count 0..1
String		 placeholder description; linter will ignore this direct
oxy_stat_samp 0..1
OXYSTATSAMPENUM		 placeholder description; linter will ignore this direct
perturbation 0..1
String		 placeholder description; linter will ignore this direct
pet_farm_animal 0..1
String		 placeholder description; linter will ignore this direct
pulmonary_disord 0..1
String		 placeholder description; linter will ignore this direct
salinity 0..1
String		 placeholder description; linter will ignore this direct
samp_store_dur 0..1
String		 placeholder description; linter will ignore this direct
samp_store_loc 0..1
String		 placeholder description; linter will ignore this direct
samp_store_temp 0..1
String		 placeholder description; linter will ignore this direct
samp_vol_we_dna_ext 0..1
String		 placeholder description; linter will ignore this direct
smoker 0..1
Boolean		 placeholder description; linter will ignore this direct
study_complt_stat 0..1
String		 placeholder description; linter will ignore this direct
temp 0..1
String		 placeholder description; linter will ignore this direct
travel_out_six_month 0..1
String		 placeholder description; linter will ignore this direct
twin_sibling 0..1
Boolean		 placeholder description; linter will ignore this direct
urine_collect_meth 0..1
String		 placeholder description; linter will ignore this direct
urogenit_tract_disor 0..1
String		 placeholder description; linter will ignore this direct
weight_loss_3_month 0..1
String		 placeholder description; linter will ignore this direct
project_name 1..1
String		 placeholder description; linter will ignore this direct

Identifier and Mapping Information

Schema Source

  • from schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first

Mappings

Mapping Type Mapped Value
self MIXS:0016003
native MIXS:HumanAssociated

LinkML Source

Direct

name: HumanAssociated
description: placeholder description; linter will ignore this
title: human-associated
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
is_a: EnvironmentalPackage
slots:
- amniotic_fluid_color
- blood_blood_disord
- chem_administration
- diet_last_six_month
- drug_usage
- ethnicity
- foetal_health_stat
- gestation_state
- host_age
- host_body_mass_index
- host_body_site
- host_body_temp
- host_diet
- host_disease_stat
- host_genotype
- host_height
- host_hiv_stat
- host_last_meal
- host_occupation
- host_phenotype
- host_pulse
- host_subject_id
- host_tot_mass
- ihmc_medication_code
- kidney_disord
- maternal_health_stat
- medic_hist_perform
- misc_param
- organism_count
- oxy_stat_samp
- perturbation
- pet_farm_animal
- pulmonary_disord
- salinity
- samp_store_dur
- samp_store_loc
- samp_store_temp
- samp_vol_we_dna_ext
- smoker
- study_complt_stat
- temp
- travel_out_six_month
- twin_sibling
- urine_collect_meth
- urogenit_tract_disor
- weight_loss_3_month
- project_name
slot_usage:
  amniotic_fluid_color:
    name: amniotic_fluid_color
    domain_of:
    - HumanAssociated
  blood_blood_disord:
    name: blood_blood_disord
    domain_of:
    - HumanAssociated
  chem_administration:
    name: chem_administration
    domain_of:
    - Agriculture
    - Air
    - FoodFarmEnvironment
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - PlantAssociated
    - Sediment
    - SymbiontAssociated
    - WastewaterSludge
    - Water
  diet_last_six_month:
    name: diet_last_six_month
    domain_of:
    - HumanAssociated
  drug_usage:
    name: drug_usage
    domain_of:
    - HumanAssociated
  ethnicity:
    name: ethnicity
    domain_of:
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
  foetal_health_stat:
    name: foetal_health_stat
    domain_of:
    - HumanAssociated
  gestation_state:
    name: gestation_state
    domain_of:
    - HumanAssociated
  host_age:
    name: host_age
    domain_of:
    - Agriculture
    - FoodFarmEnvironment
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - PlantAssociated
    - SymbiontAssociated
  host_body_mass_index:
    name: host_body_mass_index
    domain_of:
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
  host_body_site:
    name: host_body_site
    domain_of:
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - SymbiontAssociated
  host_body_temp:
    name: host_body_temp
    domain_of:
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
  host_diet:
    name: host_diet
    domain_of:
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
  host_disease_stat:
    name: host_disease_stat
    domain_of:
    - Agriculture
    - Checklist
    - FoodFarmEnvironment
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - MigsBa
    - MigsEu
    - MigsVi
    - Miuvig
    - PlantAssociated
  host_genotype:
    name: host_genotype
    domain_of:
    - Agriculture
    - FoodFarmEnvironment
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - PlantAssociated
    - SymbiontAssociated
  host_height:
    name: host_height
    domain_of:
    - Agriculture
    - FoodFarmEnvironment
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - PlantAssociated
    - SymbiontAssociated
  host_hiv_stat:
    name: host_hiv_stat
    domain_of:
    - HumanAssociated
  host_last_meal:
    name: host_last_meal
    domain_of:
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
  host_occupation:
    name: host_occupation
    domain_of:
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
  host_phenotype:
    name: host_phenotype
    domain_of:
    - Agriculture
    - FoodFarmEnvironment
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - PlantAssociated
    - SymbiontAssociated
  host_pulse:
    name: host_pulse
    domain_of:
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
  host_subject_id:
    name: host_subject_id
    domain_of:
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - SymbiontAssociated
  host_tot_mass:
    name: host_tot_mass
    domain_of:
    - Agriculture
    - FoodFarmEnvironment
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - PlantAssociated
    - SymbiontAssociated
  ihmc_medication_code:
    name: ihmc_medication_code
    domain_of:
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
  kidney_disord:
    name: kidney_disord
    domain_of:
    - HumanAssociated
  maternal_health_stat:
    name: maternal_health_stat
    domain_of:
    - HumanAssociated
  medic_hist_perform:
    name: medic_hist_perform
    domain_of:
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
  misc_param:
    name: misc_param
    domain_of:
    - Agriculture
    - Air
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - PlantAssociated
    - Sediment
    - Soil
    - SymbiontAssociated
    - WastewaterSludge
    - Water
  organism_count:
    name: organism_count
    domain_of:
    - Agriculture
    - Air
    - BuiltEnvironment
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - PlantAssociated
    - Sediment
    - SymbiontAssociated
    - WastewaterSludge
    - Water
  oxy_stat_samp:
    name: oxy_stat_samp
    domain_of:
    - Agriculture
    - Air
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - PlantAssociated
    - Sediment
    - SymbiontAssociated
    - WastewaterSludge
    - Water
  perturbation:
    name: perturbation
    domain_of:
    - Agriculture
    - Air
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodHumanFoods
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - PlantAssociated
    - Sediment
    - SymbiontAssociated
    - WastewaterSludge
    - Water
  pet_farm_animal:
    name: pet_farm_animal
    domain_of:
    - HumanAssociated
  project_name:
    name: project_name
    domain_of:
    - Air
    - BuiltEnvironment
    - Checklist
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - MiscellaneousNaturalOrArtificialEnvironment
    - Miuvig
    - PlantAssociated
    - Sediment
    - Soil
    - SymbiontAssociated
    - WastewaterSludge
    - Water
    required: true
  pulmonary_disord:
    name: pulmonary_disord
    domain_of:
    - HumanAssociated
  salinity:
    name: salinity
    domain_of:
    - Air
    - FoodFarmEnvironment
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - PlantAssociated
    - Sediment
    - WastewaterSludge
    - Water
  samp_store_dur:
    name: samp_store_dur
    domain_of:
    - Agriculture
    - Air
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - PlantAssociated
    - Sediment
    - SymbiontAssociated
    - WastewaterSludge
    - Water
  samp_store_loc:
    name: samp_store_loc
    domain_of:
    - Agriculture
    - Air
    - FoodAnimalAndAnimalFeed
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - PlantAssociated
    - Sediment
    - SymbiontAssociated
    - WastewaterSludge
    - Water
  samp_store_temp:
    name: samp_store_temp
    domain_of:
    - Agriculture
    - Air
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - PlantAssociated
    - Sediment
    - SymbiontAssociated
    - WastewaterSludge
    - Water
  samp_vol_we_dna_ext:
    name: samp_vol_we_dna_ext
    domain_of:
    - Agriculture
    - Air
    - Checklist
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - MiscellaneousNaturalOrArtificialEnvironment
    - Miuvig
    - PlantAssociated
    - Sediment
    - Soil
    - SymbiontAssociated
    - WastewaterSludge
    - Water
  smoker:
    name: smoker
    domain_of:
    - HumanAssociated
  study_complt_stat:
    name: study_complt_stat
    domain_of:
    - HumanAssociated
  temp:
    name: temp
    domain_of:
    - Agriculture
    - Air
    - Checklist
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodHumanFoods
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - MiscellaneousNaturalOrArtificialEnvironment
    - Miuvig
    - PlantAssociated
    - Sediment
    - Soil
    - SymbiontAssociated
    - WastewaterSludge
    - Water
  travel_out_six_month:
    name: travel_out_six_month
    domain_of:
    - HumanAssociated
  twin_sibling:
    name: twin_sibling
    domain_of:
    - HumanAssociated
  urine_collect_meth:
    name: urine_collect_meth
    domain_of:
    - HumanAssociated
  urogenit_tract_disor:
    name: urogenit_tract_disor
    domain_of:
    - HumanAssociated
  weight_loss_3_month:
    name: weight_loss_3_month
    domain_of:
    - HumanAssociated
class_uri: MIXS:0016003

Induced

name: HumanAssociated
description: placeholder description; linter will ignore this
title: human-associated
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
is_a: EnvironmentalPackage
slot_usage:
  amniotic_fluid_color:
    name: amniotic_fluid_color
    domain_of:
    - HumanAssociated
  blood_blood_disord:
    name: blood_blood_disord
    domain_of:
    - HumanAssociated
  chem_administration:
    name: chem_administration
    domain_of:
    - Agriculture
    - Air
    - FoodFarmEnvironment
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - PlantAssociated
    - Sediment
    - SymbiontAssociated
    - WastewaterSludge
    - Water
  diet_last_six_month:
    name: diet_last_six_month
    domain_of:
    - HumanAssociated
  drug_usage:
    name: drug_usage
    domain_of:
    - HumanAssociated
  ethnicity:
    name: ethnicity
    domain_of:
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
  foetal_health_stat:
    name: foetal_health_stat
    domain_of:
    - HumanAssociated
  gestation_state:
    name: gestation_state
    domain_of:
    - HumanAssociated
  host_age:
    name: host_age
    domain_of:
    - Agriculture
    - FoodFarmEnvironment
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - PlantAssociated
    - SymbiontAssociated
  host_body_mass_index:
    name: host_body_mass_index
    domain_of:
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
  host_body_site:
    name: host_body_site
    domain_of:
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - SymbiontAssociated
  host_body_temp:
    name: host_body_temp
    domain_of:
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
  host_diet:
    name: host_diet
    domain_of:
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
  host_disease_stat:
    name: host_disease_stat
    domain_of:
    - Agriculture
    - Checklist
    - FoodFarmEnvironment
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - MigsBa
    - MigsEu
    - MigsVi
    - Miuvig
    - PlantAssociated
  host_genotype:
    name: host_genotype
    domain_of:
    - Agriculture
    - FoodFarmEnvironment
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - PlantAssociated
    - SymbiontAssociated
  host_height:
    name: host_height
    domain_of:
    - Agriculture
    - FoodFarmEnvironment
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - PlantAssociated
    - SymbiontAssociated
  host_hiv_stat:
    name: host_hiv_stat
    domain_of:
    - HumanAssociated
  host_last_meal:
    name: host_last_meal
    domain_of:
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
  host_occupation:
    name: host_occupation
    domain_of:
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
  host_phenotype:
    name: host_phenotype
    domain_of:
    - Agriculture
    - FoodFarmEnvironment
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - PlantAssociated
    - SymbiontAssociated
  host_pulse:
    name: host_pulse
    domain_of:
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
  host_subject_id:
    name: host_subject_id
    domain_of:
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - SymbiontAssociated
  host_tot_mass:
    name: host_tot_mass
    domain_of:
    - Agriculture
    - FoodFarmEnvironment
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - PlantAssociated
    - SymbiontAssociated
  ihmc_medication_code:
    name: ihmc_medication_code
    domain_of:
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
  kidney_disord:
    name: kidney_disord
    domain_of:
    - HumanAssociated
  maternal_health_stat:
    name: maternal_health_stat
    domain_of:
    - HumanAssociated
  medic_hist_perform:
    name: medic_hist_perform
    domain_of:
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
  misc_param:
    name: misc_param
    domain_of:
    - Agriculture
    - Air
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - PlantAssociated
    - Sediment
    - Soil
    - SymbiontAssociated
    - WastewaterSludge
    - Water
  organism_count:
    name: organism_count
    domain_of:
    - Agriculture
    - Air
    - BuiltEnvironment
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - PlantAssociated
    - Sediment
    - SymbiontAssociated
    - WastewaterSludge
    - Water
  oxy_stat_samp:
    name: oxy_stat_samp
    domain_of:
    - Agriculture
    - Air
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - PlantAssociated
    - Sediment
    - SymbiontAssociated
    - WastewaterSludge
    - Water
  perturbation:
    name: perturbation
    domain_of:
    - Agriculture
    - Air
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodHumanFoods
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - PlantAssociated
    - Sediment
    - SymbiontAssociated
    - WastewaterSludge
    - Water
  pet_farm_animal:
    name: pet_farm_animal
    domain_of:
    - HumanAssociated
  project_name:
    name: project_name
    domain_of:
    - Air
    - BuiltEnvironment
    - Checklist
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - MiscellaneousNaturalOrArtificialEnvironment
    - Miuvig
    - PlantAssociated
    - Sediment
    - Soil
    - SymbiontAssociated
    - WastewaterSludge
    - Water
    required: true
  pulmonary_disord:
    name: pulmonary_disord
    domain_of:
    - HumanAssociated
  salinity:
    name: salinity
    domain_of:
    - Air
    - FoodFarmEnvironment
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - PlantAssociated
    - Sediment
    - WastewaterSludge
    - Water
  samp_store_dur:
    name: samp_store_dur
    domain_of:
    - Agriculture
    - Air
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - PlantAssociated
    - Sediment
    - SymbiontAssociated
    - WastewaterSludge
    - Water
  samp_store_loc:
    name: samp_store_loc
    domain_of:
    - Agriculture
    - Air
    - FoodAnimalAndAnimalFeed
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - PlantAssociated
    - Sediment
    - SymbiontAssociated
    - WastewaterSludge
    - Water
  samp_store_temp:
    name: samp_store_temp
    domain_of:
    - Agriculture
    - Air
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - PlantAssociated
    - Sediment
    - SymbiontAssociated
    - WastewaterSludge
    - Water
  samp_vol_we_dna_ext:
    name: samp_vol_we_dna_ext
    domain_of:
    - Agriculture
    - Air
    - Checklist
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - MiscellaneousNaturalOrArtificialEnvironment
    - Miuvig
    - PlantAssociated
    - Sediment
    - Soil
    - SymbiontAssociated
    - WastewaterSludge
    - Water
  smoker:
    name: smoker
    domain_of:
    - HumanAssociated
  study_complt_stat:
    name: study_complt_stat
    domain_of:
    - HumanAssociated
  temp:
    name: temp
    domain_of:
    - Agriculture
    - Air
    - Checklist
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodHumanFoods
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - MiscellaneousNaturalOrArtificialEnvironment
    - Miuvig
    - PlantAssociated
    - Sediment
    - Soil
    - SymbiontAssociated
    - WastewaterSludge
    - Water
  travel_out_six_month:
    name: travel_out_six_month
    domain_of:
    - HumanAssociated
  twin_sibling:
    name: twin_sibling
    domain_of:
    - HumanAssociated
  urine_collect_meth:
    name: urine_collect_meth
    domain_of:
    - HumanAssociated
  urogenit_tract_disor:
    name: urogenit_tract_disor
    domain_of:
    - HumanAssociated
  weight_loss_3_month:
    name: weight_loss_3_month
    domain_of:
    - HumanAssociated
attributes:
  amniotic_fluid_color:
    name: amniotic_fluid_color
    description: placeholder description; linter will ignore this
    title: amniotic fluid/color
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000276
    alias: amniotic_fluid_color
    owner: HumanAssociated
    domain_of:
    - HumanAssociated
    range: string
    pattern: '[^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{free_text}'
  blood_blood_disord:
    name: blood_blood_disord
    description: placeholder description; linter will ignore this
    title: blood/blood disorder
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000271
    alias: blood_blood_disord
    owner: HumanAssociated
    domain_of:
    - HumanAssociated
    range: string
    pattern: '[^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{free_text}'
  chem_administration:
    name: chem_administration
    description: placeholder description; linter will ignore this
    title: chemical administration
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000751
    alias: chem_administration
    owner: HumanAssociated
    domain_of:
    - Agriculture
    - Air
    - FoodFarmEnvironment
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - PlantAssociated
    - Sediment
    - SymbiontAssociated
    - WastewaterSludge
    - Water
    range: string
  diet_last_six_month:
    name: diet_last_six_month
    description: placeholder description; linter will ignore this
    title: major diet change in last six months
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000266
    alias: diet_last_six_month
    owner: HumanAssociated
    domain_of:
    - HumanAssociated
    range: string
  drug_usage:
    name: drug_usage
    description: placeholder description; linter will ignore this
    title: drug usage
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000894
    alias: drug_usage
    owner: HumanAssociated
    domain_of:
    - HumanAssociated
    range: string
  ethnicity:
    name: ethnicity
    description: placeholder description; linter will ignore this
    title: ethnicity
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000895
    alias: ethnicity
    owner: HumanAssociated
    domain_of:
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    range: string
    pattern: '[^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{free_text}'
  foetal_health_stat:
    name: foetal_health_stat
    description: placeholder description; linter will ignore this
    title: amniotic fluid/foetal health status
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000275
    alias: foetal_health_stat
    owner: HumanAssociated
    domain_of:
    - HumanAssociated
    range: string
    pattern: '[^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{free_text}'
  gestation_state:
    name: gestation_state
    description: placeholder description; linter will ignore this
    title: amniotic fluid/gestation state
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000272
    alias: gestation_state
    owner: HumanAssociated
    domain_of:
    - HumanAssociated
    range: string
    pattern: '[^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{free_text}'
  host_age:
    name: host_age
    description: placeholder description; linter will ignore this
    title: host age
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000255
    alias: host_age
    owner: HumanAssociated
    domain_of:
    - Agriculture
    - FoodFarmEnvironment
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - PlantAssociated
    - SymbiontAssociated
    range: string
    pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{float} {unit}'
  host_body_mass_index:
    name: host_body_mass_index
    description: placeholder description; linter will ignore this
    title: host body-mass index
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000317
    alias: host_body_mass_index
    owner: HumanAssociated
    domain_of:
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    range: string
    pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{float} {unit}'
  host_body_site:
    name: host_body_site
    description: placeholder description; linter will ignore this
    title: host body site
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000867
    alias: host_body_site
    owner: HumanAssociated
    domain_of:
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - SymbiontAssociated
    range: string
    pattern: '[^s\|][^\r\n\t\|]* [[a-zA-Z]+:[0-9]+]'
    structured_pattern:
      syntax: '{term_label} [{term_id}]'
  host_body_temp:
    name: host_body_temp
    description: placeholder description; linter will ignore this
    title: host body temperature
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000274
    alias: host_body_temp
    owner: HumanAssociated
    domain_of:
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    range: string
    pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{float} {unit}'
  host_diet:
    name: host_diet
    description: placeholder description; linter will ignore this
    title: host diet
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000869
    alias: host_diet
    owner: HumanAssociated
    domain_of:
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    range: string
    pattern: '[^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{free_text}'
  host_disease_stat:
    name: host_disease_stat
    description: placeholder description; linter will ignore this
    title: host disease status
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000031
    alias: host_disease_stat
    owner: HumanAssociated
    domain_of:
    - Agriculture
    - Checklist
    - FoodFarmEnvironment
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - MigsBa
    - MigsEu
    - MigsVi
    - Miuvig
    - PlantAssociated
    range: string
    pattern: ((([^s\|][^\r\n\t\|]* [[a-zA-Z]+:[0-9]+])|[^s\|][^\r\n\t\|]*)\|)*(([^s\|][^\r\n\t\|]*
      [[a-zA-Z]+:[0-9]+])|[^s\|][^\r\n\t\|]*)
    structured_pattern:
      syntax: ((({term_label} [{term_id}])|{free_text})\|)*(({term_label} [{term_id}])|{free_text})
  host_genotype:
    name: host_genotype
    description: placeholder description; linter will ignore this
    title: host genotype
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000365
    alias: host_genotype
    owner: HumanAssociated
    domain_of:
    - Agriculture
    - FoodFarmEnvironment
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - PlantAssociated
    - SymbiontAssociated
    range: string
    pattern: '[^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{free_text}'
  host_height:
    name: host_height
    description: placeholder description; linter will ignore this
    title: host height
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000264
    alias: host_height
    owner: HumanAssociated
    domain_of:
    - Agriculture
    - FoodFarmEnvironment
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - PlantAssociated
    - SymbiontAssociated
    range: string
    pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{float} {unit}'
  host_hiv_stat:
    name: host_hiv_stat
    description: placeholder description; linter will ignore this
    title: host HIV status
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000265
    alias: host_hiv_stat
    owner: HumanAssociated
    domain_of:
    - HumanAssociated
    range: string
  host_last_meal:
    name: host_last_meal
    description: placeholder description; linter will ignore this
    title: host last meal
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000870
    alias: host_last_meal
    owner: HumanAssociated
    domain_of:
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    range: string
  host_occupation:
    name: host_occupation
    description: placeholder description; linter will ignore this
    title: host occupation
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000896
    alias: host_occupation
    owner: HumanAssociated
    domain_of:
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    range: string
  host_phenotype:
    name: host_phenotype
    description: placeholder description; linter will ignore this
    title: host phenotype
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000874
    alias: host_phenotype
    owner: HumanAssociated
    domain_of:
    - Agriculture
    - FoodFarmEnvironment
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - PlantAssociated
    - SymbiontAssociated
    range: string
    pattern: '[^s\|][^\r\n\t\|]* [[a-zA-Z]+:[0-9]+]'
    structured_pattern:
      syntax: '{term_label} [{term_id}]'
  host_pulse:
    name: host_pulse
    description: placeholder description; linter will ignore this
    title: host pulse
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000333
    alias: host_pulse
    owner: HumanAssociated
    domain_of:
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    range: string
    pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{float} {unit}'
  host_subject_id:
    name: host_subject_id
    description: placeholder description; linter will ignore this
    title: host subject id
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000861
    alias: host_subject_id
    owner: HumanAssociated
    domain_of:
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - SymbiontAssociated
    range: string
    pattern: '[^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{free_text}'
  host_tot_mass:
    name: host_tot_mass
    description: placeholder description; linter will ignore this
    title: host total mass
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000263
    alias: host_tot_mass
    owner: HumanAssociated
    domain_of:
    - Agriculture
    - FoodFarmEnvironment
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - PlantAssociated
    - SymbiontAssociated
    range: string
    pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{float} {unit}'
  ihmc_medication_code:
    name: ihmc_medication_code
    description: placeholder description; linter will ignore this
    title: IHMC medication code
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000884
    alias: ihmc_medication_code
    owner: HumanAssociated
    domain_of:
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    range: integer
  kidney_disord:
    name: kidney_disord
    description: placeholder description; linter will ignore this
    title: urine/kidney disorder
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000277
    alias: kidney_disord
    owner: HumanAssociated
    domain_of:
    - HumanAssociated
    range: string
    pattern: '[^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{free_text}'
  maternal_health_stat:
    name: maternal_health_stat
    description: placeholder description; linter will ignore this
    title: amniotic fluid/maternal health status
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000273
    alias: maternal_health_stat
    owner: HumanAssociated
    domain_of:
    - HumanAssociated
    range: string
    pattern: '[^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{free_text}'
  medic_hist_perform:
    name: medic_hist_perform
    description: placeholder description; linter will ignore this
    title: medical history performed
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000897
    alias: medic_hist_perform
    owner: HumanAssociated
    domain_of:
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    range: boolean
  misc_param:
    name: misc_param
    description: placeholder description; linter will ignore this
    title: miscellaneous parameter
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000752
    alias: misc_param
    owner: HumanAssociated
    domain_of:
    - Agriculture
    - Air
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - PlantAssociated
    - Sediment
    - Soil
    - SymbiontAssociated
    - WastewaterSludge
    - Water
    range: string
    pattern: (([^s\|][^\r\n\t\|]*;[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*)\\|)*([^s\|][^\r\n\t\|]*;[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)?
      [^s\|][^\r\n\t\|]*)
    structured_pattern:
      syntax: (({free_text};{float} {unit})\\|)*({free_text};{float} {unit})
  organism_count:
    name: organism_count
    description: placeholder description; linter will ignore this
    title: organism count
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000103
    alias: organism_count
    owner: HumanAssociated
    domain_of:
    - Agriculture
    - Air
    - BuiltEnvironment
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - PlantAssociated
    - Sediment
    - SymbiontAssociated
    - WastewaterSludge
    - Water
    range: string
  oxy_stat_samp:
    name: oxy_stat_samp
    description: placeholder description; linter will ignore this
    title: oxygenation status of sample
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000753
    alias: oxy_stat_samp
    owner: HumanAssociated
    domain_of:
    - Agriculture
    - Air
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - PlantAssociated
    - Sediment
    - SymbiontAssociated
    - WastewaterSludge
    - Water
    range: OXY_STAT_SAMP_ENUM
  perturbation:
    name: perturbation
    description: placeholder description; linter will ignore this
    title: perturbation
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000754
    alias: perturbation
    owner: HumanAssociated
    domain_of:
    - Agriculture
    - Air
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodHumanFoods
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - PlantAssociated
    - Sediment
    - SymbiontAssociated
    - WastewaterSludge
    - Water
    range: string
  pet_farm_animal:
    name: pet_farm_animal
    description: placeholder description; linter will ignore this
    title: presence of pets or farm animals
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000267
    alias: pet_farm_animal
    owner: HumanAssociated
    domain_of:
    - HumanAssociated
    range: string
  pulmonary_disord:
    name: pulmonary_disord
    description: placeholder description; linter will ignore this
    title: lung/pulmonary disorder
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000269
    alias: pulmonary_disord
    owner: HumanAssociated
    domain_of:
    - HumanAssociated
    range: string
    pattern: '[^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{free_text}'
  salinity:
    name: salinity
    description: placeholder description; linter will ignore this
    title: salinity
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000183
    alias: salinity
    owner: HumanAssociated
    domain_of:
    - Air
    - FoodFarmEnvironment
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - PlantAssociated
    - Sediment
    - WastewaterSludge
    - Water
    range: string
    pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{float} {unit}'
  samp_store_dur:
    name: samp_store_dur
    description: placeholder description; linter will ignore this
    title: sample storage duration
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000116
    alias: samp_store_dur
    owner: HumanAssociated
    domain_of:
    - Agriculture
    - Air
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - PlantAssociated
    - Sediment
    - SymbiontAssociated
    - WastewaterSludge
    - Water
    range: string
    pattern: P(?=\d+[YMWD])(\d+Y)?(\d+M)?(\d+W)?(\d+D)?(T(?=\d+[HMS])(\d+H)?(\d+M)?(\d+S)?)?
    structured_pattern:
      syntax: '{period}'
  samp_store_loc:
    name: samp_store_loc
    description: placeholder description; linter will ignore this
    title: sample storage location
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000755
    alias: samp_store_loc
    owner: HumanAssociated
    domain_of:
    - Agriculture
    - Air
    - FoodAnimalAndAnimalFeed
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - PlantAssociated
    - Sediment
    - SymbiontAssociated
    - WastewaterSludge
    - Water
    range: string
    pattern: '[^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{free_text}'
  samp_store_temp:
    name: samp_store_temp
    description: placeholder description; linter will ignore this
    title: sample storage temperature
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000110
    alias: samp_store_temp
    owner: HumanAssociated
    domain_of:
    - Agriculture
    - Air
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - PlantAssociated
    - Sediment
    - SymbiontAssociated
    - WastewaterSludge
    - Water
    range: string
    pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{float} {unit}'
  samp_vol_we_dna_ext:
    name: samp_vol_we_dna_ext
    description: placeholder description; linter will ignore this
    title: sample volume or weight for DNA extraction
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000111
    alias: samp_vol_we_dna_ext
    owner: HumanAssociated
    domain_of:
    - Agriculture
    - Air
    - Checklist
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - MiscellaneousNaturalOrArtificialEnvironment
    - Miuvig
    - PlantAssociated
    - Sediment
    - Soil
    - SymbiontAssociated
    - WastewaterSludge
    - Water
    range: string
    pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{float} {unit}'
  smoker:
    name: smoker
    description: placeholder description; linter will ignore this
    title: smoker
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000262
    alias: smoker
    owner: HumanAssociated
    domain_of:
    - HumanAssociated
    range: boolean
  study_complt_stat:
    name: study_complt_stat
    description: placeholder description; linter will ignore this
    title: study completion status
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000898
    alias: study_complt_stat
    owner: HumanAssociated
    domain_of:
    - HumanAssociated
    range: string
  temp:
    name: temp
    description: placeholder description; linter will ignore this
    title: temperature
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000113
    alias: temp
    owner: HumanAssociated
    domain_of:
    - Agriculture
    - Air
    - Checklist
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodHumanFoods
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - MiscellaneousNaturalOrArtificialEnvironment
    - Miuvig
    - PlantAssociated
    - Sediment
    - Soil
    - SymbiontAssociated
    - WastewaterSludge
    - Water
    range: string
    pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{float} {unit}'
  travel_out_six_month:
    name: travel_out_six_month
    description: placeholder description; linter will ignore this
    title: travel outside the country in last six months
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000268
    alias: travel_out_six_month
    owner: HumanAssociated
    domain_of:
    - HumanAssociated
    range: string
    pattern: '[^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{free_text}'
  twin_sibling:
    name: twin_sibling
    description: placeholder description; linter will ignore this
    title: twin sibling presence
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000326
    alias: twin_sibling
    owner: HumanAssociated
    domain_of:
    - HumanAssociated
    range: boolean
  urine_collect_meth:
    name: urine_collect_meth
    description: placeholder description; linter will ignore this
    title: urine/collection method
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000899
    alias: urine_collect_meth
    owner: HumanAssociated
    domain_of:
    - HumanAssociated
    range: string
  urogenit_tract_disor:
    name: urogenit_tract_disor
    description: placeholder description; linter will ignore this
    title: urine/urogenital tract disorder
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000278
    alias: urogenit_tract_disor
    owner: HumanAssociated
    domain_of:
    - HumanAssociated
    range: string
    pattern: '[^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{free_text}'
  weight_loss_3_month:
    name: weight_loss_3_month
    description: placeholder description; linter will ignore this
    title: weight loss in last three months
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000295
    alias: weight_loss_3_month
    owner: HumanAssociated
    domain_of:
    - HumanAssociated
    range: string
  project_name:
    name: project_name
    description: placeholder description; linter will ignore this
    title: project name
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000092
    alias: project_name
    owner: HumanAssociated
    domain_of:
    - Air
    - BuiltEnvironment
    - Checklist
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - MiscellaneousNaturalOrArtificialEnvironment
    - Miuvig
    - PlantAssociated
    - Sediment
    - Soil
    - SymbiontAssociated
    - WastewaterSludge
    - Water
    range: string
    required: true
    pattern: '[^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{free_text}'
class_uri: MIXS:0016003