Class: FoodHumanFoods
placeholder description; linter will ignore this
URI: MIXS:0016022
classDiagram
class FoodHumanFoods
EnvironmentalPackage <|-- FoodHumanFoods
FoodHumanFoods : bacterial_density
FoodHumanFoods : coll_site_geo_feat
FoodHumanFoods : collection_date
FoodHumanFoods : cons_food_stor_dur
FoodHumanFoods : cons_food_stor_temp
FoodHumanFoods : cons_purch_date
FoodHumanFoods : cons_qty_purchased
FoodHumanFoods : cult_isol_date
FoodHumanFoods : cult_result
FoodHumanFoods : cult_result_org
FoodHumanFoods : cult_target
FoodHumanFoods : dietary_claim_use
FoodHumanFoods : enrichment_protocol
FoodHumanFoods : env_broad_scale
FoodHumanFoods : env_local_scale
FoodHumanFoods : env_medium
FoodHumanFoods : experimental_factor
FoodHumanFoods : ferm_chem_add
FoodHumanFoods : ferm_chem_add_perc
FoodHumanFoods : ferm_headspace_oxy
FoodHumanFoods : ferm_medium
FoodHumanFoods : ferm_pH
FoodHumanFoods : ferm_rel_humidity
FoodHumanFoods : ferm_temp
FoodHumanFoods : ferm_time
FoodHumanFoods : ferm_vessel
FoodHumanFoods : food_additive
FoodHumanFoods : food_allergen_label
FoodHumanFoods : food_contact_surf
FoodHumanFoods : food_contain_wrap
FoodHumanFoods : food_cooking_proc
FoodHumanFoods : food_dis_point
FoodHumanFoods : food_ingredient
FoodHumanFoods : food_name_status
FoodHumanFoods : food_origin
FoodHumanFoods : food_pack_capacity
FoodHumanFoods : food_pack_integrity
FoodHumanFoods : food_pack_medium
FoodHumanFoods : food_preserv_proc
FoodHumanFoods : food_prior_contact
FoodHumanFoods : food_prod
FoodHumanFoods : food_prod_synonym
FoodHumanFoods : food_product_qual
FoodHumanFoods : food_product_type
FoodHumanFoods : food_quality_date
FoodHumanFoods : food_source
FoodHumanFoods : food_trace_list
FoodHumanFoods : food_trav_mode
FoodHumanFoods : food_trav_vehic
FoodHumanFoods : food_treat_proc
FoodHumanFoods : genetic_mod
FoodHumanFoods : geo_loc_name
FoodHumanFoods : HACCP_term
FoodHumanFoods : IFSAC_category
FoodHumanFoods : intended_consumer
FoodHumanFoods : lat_lon
FoodHumanFoods : library_prep_kit
FoodHumanFoods : lot_number
FoodHumanFoods : microb_cult_med
FoodHumanFoods : microb_start
FoodHumanFoods : microb_start_count
FoodHumanFoods : microb_start_inoc
FoodHumanFoods : microb_start_prep
FoodHumanFoods : microb_start_source
FoodHumanFoods : microb_start_taxID
FoodHumanFoods : misc_param
FoodHumanFoods : nucl_acid_ext
FoodHumanFoods : nucl_acid_ext_kit
FoodHumanFoods : num_samp_collect
FoodHumanFoods : organism_count
FoodHumanFoods : part_plant_animal
FoodHumanFoods : perturbation
FoodHumanFoods : pool_dna_extracts
FoodHumanFoods : project_name
FoodHumanFoods : repository_name
FoodHumanFoods : samp_pooling
FoodHumanFoods : samp_purpose
FoodHumanFoods : samp_rep_biol
FoodHumanFoods : samp_rep_tech
FoodHumanFoods : samp_size
FoodHumanFoods : samp_source_mat_cat
FoodHumanFoods : samp_stor_device
FoodHumanFoods : samp_stor_media
FoodHumanFoods : samp_store_dur
FoodHumanFoods : samp_store_loc
FoodHumanFoods : samp_store_temp
FoodHumanFoods : samp_transport_cont
FoodHumanFoods : samp_transport_dur
FoodHumanFoods : samp_transport_temp
FoodHumanFoods : samp_vol_we_dna_ext
FoodHumanFoods : seq_meth
FoodHumanFoods : sequencing_kit
FoodHumanFoods : sequencing_location
FoodHumanFoods : serovar_or_serotype
FoodHumanFoods : spikein_AMR
FoodHumanFoods : spikein_antibiotic
FoodHumanFoods : spikein_count
FoodHumanFoods : spikein_growth_med
FoodHumanFoods : spikein_metal
FoodHumanFoods : spikein_org
FoodHumanFoods : spikein_serovar
FoodHumanFoods : spikein_strain
FoodHumanFoods : study_design
FoodHumanFoods : study_inc_dur
FoodHumanFoods : study_inc_temp
FoodHumanFoods : study_timecourse
FoodHumanFoods : study_tmnt
FoodHumanFoods : temp
FoodHumanFoods : timepoint
Inheritance
- EnvironmentalPackage
- FoodHumanFoods
Slots
| Name | Cardinality and Range | Description | Inheritance |
|---|---|---|---|
| ferm_chem_add | 0..1 recommended String |
placeholder description; linter will ignore this | direct |
| ferm_chem_add_perc | 0..1 recommended String |
placeholder description; linter will ignore this | direct |
| ferm_headspace_oxy | 0..1 recommended String |
placeholder description; linter will ignore this | direct |
| ferm_medium | 0..1 recommended String |
placeholder description; linter will ignore this | direct |
| ferm_pH | 0..1 recommended Float |
placeholder description; linter will ignore this | direct |
| ferm_rel_humidity | 0..1 recommended String |
placeholder description; linter will ignore this | direct |
| ferm_temp | 0..1 recommended String |
placeholder description; linter will ignore this | direct |
| ferm_time | 0..1 recommended String |
placeholder description; linter will ignore this | direct |
| ferm_vessel | 0..1 recommended String |
placeholder description; linter will ignore this | direct |
| bacterial_density | 0..1 String |
placeholder description; linter will ignore this | direct |
| cons_food_stor_dur | 0..1 String |
placeholder description; linter will ignore this | direct |
| cons_food_stor_temp | 0..1 String |
placeholder description; linter will ignore this | direct |
| cons_purch_date | 0..1 String |
placeholder description; linter will ignore this | direct |
| cons_qty_purchased | 0..1 String |
placeholder description; linter will ignore this | direct |
| cult_isol_date | 0..1 String |
placeholder description; linter will ignore this | direct |
| cult_result | 0..1 String |
placeholder description; linter will ignore this | direct |
| cult_result_org | 0..1 String |
placeholder description; linter will ignore this | direct |
| cult_target | 0..1 String |
placeholder description; linter will ignore this | direct |
| dietary_claim_use | 0..1 String |
placeholder description; linter will ignore this | direct |
| enrichment_protocol | 0..1 String |
placeholder description; linter will ignore this | direct |
| experimental_factor | 0..1 String |
placeholder description; linter will ignore this | direct |
| food_additive | 0..1 String |
placeholder description; linter will ignore this | direct |
| food_allergen_label | 0..1 String |
placeholder description; linter will ignore this | direct |
| food_contact_surf | 0..1 String |
placeholder description; linter will ignore this | direct |
| food_contain_wrap | 0..1 String |
placeholder description; linter will ignore this | direct |
| food_cooking_proc | 0..1 String |
placeholder description; linter will ignore this | direct |
| food_dis_point | 0..1 String |
placeholder description; linter will ignore this | direct |
| food_ingredient | 0..1 String |
placeholder description; linter will ignore this | direct |
| food_name_status | 0..1 String |
placeholder description; linter will ignore this | direct |
| food_origin | 0..1 String |
placeholder description; linter will ignore this | direct |
| food_pack_capacity | 0..1 String |
placeholder description; linter will ignore this | direct |
| food_pack_integrity | 0..1 String |
placeholder description; linter will ignore this | direct |
| food_pack_medium | 0..1 String |
placeholder description; linter will ignore this | direct |
| food_preserv_proc | 0..1 String |
placeholder description; linter will ignore this | direct |
| food_prior_contact | 0..1 String |
placeholder description; linter will ignore this | direct |
| food_prod | 0..1 String |
placeholder description; linter will ignore this | direct |
| food_prod_synonym | 0..1 String |
placeholder description; linter will ignore this | direct |
| food_product_qual | 0..1 String |
placeholder description; linter will ignore this | direct |
| food_quality_date | 0..1 String |
placeholder description; linter will ignore this | direct |
| food_source | 0..1 String |
placeholder description; linter will ignore this | direct |
| food_trace_list | 0..1 String |
placeholder description; linter will ignore this | direct |
| food_trav_mode | 0..1 String |
placeholder description; linter will ignore this | direct |
| food_trav_vehic | 0..1 String |
placeholder description; linter will ignore this | direct |
| food_treat_proc | 0..1 String |
placeholder description; linter will ignore this | direct |
| genetic_mod | 0..1 String |
placeholder description; linter will ignore this | direct |
| HACCP_term | 0..1 String |
placeholder description; linter will ignore this | direct |
| intended_consumer | 0..1 String |
placeholder description; linter will ignore this | direct |
| library_prep_kit | 0..1 String |
placeholder description; linter will ignore this | direct |
| lot_number | 0..1 String |
placeholder description; linter will ignore this | direct |
| microb_cult_med | 0..1 String |
placeholder description; linter will ignore this | direct |
| microb_start | 0..1 String |
placeholder description; linter will ignore this | direct |
| microb_start_count | 0..1 String |
placeholder description; linter will ignore this | direct |
| microb_start_inoc | 0..1 String |
placeholder description; linter will ignore this | direct |
| microb_start_prep | 0..1 String |
placeholder description; linter will ignore this | direct |
| microb_start_source | 0..1 String |
placeholder description; linter will ignore this | direct |
| microb_start_taxID | 0..1 String |
placeholder description; linter will ignore this | direct |
| misc_param | 0..1 String |
placeholder description; linter will ignore this | direct |
| nucl_acid_ext | 0..1 String |
placeholder description; linter will ignore this | direct |
| nucl_acid_ext_kit | 0..1 String |
placeholder description; linter will ignore this | direct |
| num_samp_collect | 0..1 String |
placeholder description; linter will ignore this | direct |
| organism_count | 0..1 String |
placeholder description; linter will ignore this | direct |
| part_plant_animal | 0..1 String |
placeholder description; linter will ignore this | direct |
| perturbation | 0..1 String |
placeholder description; linter will ignore this | direct |
| pool_dna_extracts | 0..1 String |
placeholder description; linter will ignore this | direct |
| repository_name | 0..1 String |
placeholder description; linter will ignore this | direct |
| samp_pooling | 0..1 String |
placeholder description; linter will ignore this | direct |
| samp_purpose | 0..1 String |
placeholder description; linter will ignore this | direct |
| samp_rep_biol | 0..1 String |
placeholder description; linter will ignore this | direct |
| samp_rep_tech | 0..1 String |
placeholder description; linter will ignore this | direct |
| samp_size | 0..1 String |
placeholder description; linter will ignore this | direct |
| samp_source_mat_cat | 0..1 String |
placeholder description; linter will ignore this | direct |
| samp_stor_device | 0..1 String |
placeholder description; linter will ignore this | direct |
| samp_stor_media | 0..1 String |
placeholder description; linter will ignore this | direct |
| samp_store_dur | 0..1 String |
placeholder description; linter will ignore this | direct |
| samp_store_loc | 0..1 String |
placeholder description; linter will ignore this | direct |
| samp_store_temp | 0..1 String |
placeholder description; linter will ignore this | direct |
| samp_transport_cont | 0..1 String |
placeholder description; linter will ignore this | direct |
| samp_transport_dur | 0..1 String |
placeholder description; linter will ignore this | direct |
| samp_transport_temp | 0..1 String |
placeholder description; linter will ignore this | direct |
| samp_vol_we_dna_ext | 0..1 String |
placeholder description; linter will ignore this | direct |
| sequencing_kit | 0..1 String |
placeholder description; linter will ignore this | direct |
| sequencing_location | 0..1 String |
placeholder description; linter will ignore this | direct |
| serovar_or_serotype | 0..1 String |
placeholder description; linter will ignore this | direct |
| spikein_AMR | 0..1 String |
placeholder description; linter will ignore this | direct |
| spikein_antibiotic | 0..1 String |
placeholder description; linter will ignore this | direct |
| spikein_count | 0..1 String |
placeholder description; linter will ignore this | direct |
| spikein_growth_med | 0..1 String |
placeholder description; linter will ignore this | direct |
| spikein_metal | 0..1 String |
placeholder description; linter will ignore this | direct |
| spikein_org | 0..1 String |
placeholder description; linter will ignore this | direct |
| spikein_serovar | 0..1 String |
placeholder description; linter will ignore this | direct |
| spikein_strain | 0..1 String |
placeholder description; linter will ignore this | direct |
| study_design | 0..1 String |
placeholder description; linter will ignore this | direct |
| study_inc_dur | 0..1 String |
placeholder description; linter will ignore this | direct |
| study_inc_temp | 0..1 String |
placeholder description; linter will ignore this | direct |
| study_timecourse | 0..1 String |
placeholder description; linter will ignore this | direct |
| study_tmnt | 0..1 String |
placeholder description; linter will ignore this | direct |
| temp | 0..1 String |
placeholder description; linter will ignore this | direct |
| timepoint | 0..1 String |
placeholder description; linter will ignore this | direct |
| coll_site_geo_feat | 1..1 String |
placeholder description; linter will ignore this | direct |
| collection_date | 1..1 String |
placeholder description; linter will ignore this | direct |
| env_broad_scale | 1..1 String |
placeholder description; linter will ignore this | direct |
| env_local_scale | 1..1 String |
placeholder description; linter will ignore this | direct |
| env_medium | 1..1 String |
placeholder description; linter will ignore this | direct |
| food_product_type | 1..1 String |
placeholder description; linter will ignore this | direct |
| geo_loc_name | 1..1 String |
placeholder description; linter will ignore this | direct |
| IFSAC_category | 1..1 String |
placeholder description; linter will ignore this | direct |
| lat_lon | 1..1 String |
placeholder description; linter will ignore this | direct |
| project_name | 1..1 String |
placeholder description; linter will ignore this | direct |
| seq_meth | 1..1 String |
placeholder description; linter will ignore this | direct |
Identifier and Mapping Information
Schema Source
- from schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
Mappings
| Mapping Type | Mapped Value |
|---|---|
| self | MIXS:0016022 |
| native | MIXS:FoodHumanFoods |
LinkML Source
Direct
name: FoodHumanFoods
description: placeholder description; linter will ignore this
title: food-human foods
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
is_a: EnvironmentalPackage
slots:
- ferm_chem_add
- ferm_chem_add_perc
- ferm_headspace_oxy
- ferm_medium
- ferm_pH
- ferm_rel_humidity
- ferm_temp
- ferm_time
- ferm_vessel
- bacterial_density
- cons_food_stor_dur
- cons_food_stor_temp
- cons_purch_date
- cons_qty_purchased
- cult_isol_date
- cult_result
- cult_result_org
- cult_target
- dietary_claim_use
- enrichment_protocol
- experimental_factor
- food_additive
- food_allergen_label
- food_contact_surf
- food_contain_wrap
- food_cooking_proc
- food_dis_point
- food_ingredient
- food_name_status
- food_origin
- food_pack_capacity
- food_pack_integrity
- food_pack_medium
- food_preserv_proc
- food_prior_contact
- food_prod
- food_prod_synonym
- food_product_qual
- food_quality_date
- food_source
- food_trace_list
- food_trav_mode
- food_trav_vehic
- food_treat_proc
- genetic_mod
- HACCP_term
- intended_consumer
- library_prep_kit
- lot_number
- microb_cult_med
- microb_start
- microb_start_count
- microb_start_inoc
- microb_start_prep
- microb_start_source
- microb_start_taxID
- misc_param
- nucl_acid_ext
- nucl_acid_ext_kit
- num_samp_collect
- organism_count
- part_plant_animal
- perturbation
- pool_dna_extracts
- repository_name
- samp_pooling
- samp_purpose
- samp_rep_biol
- samp_rep_tech
- samp_size
- samp_source_mat_cat
- samp_stor_device
- samp_stor_media
- samp_store_dur
- samp_store_loc
- samp_store_temp
- samp_transport_cont
- samp_transport_dur
- samp_transport_temp
- samp_vol_we_dna_ext
- sequencing_kit
- sequencing_location
- serovar_or_serotype
- spikein_AMR
- spikein_antibiotic
- spikein_count
- spikein_growth_med
- spikein_metal
- spikein_org
- spikein_serovar
- spikein_strain
- study_design
- study_inc_dur
- study_inc_temp
- study_timecourse
- study_tmnt
- temp
- timepoint
- coll_site_geo_feat
- collection_date
- env_broad_scale
- env_local_scale
- env_medium
- food_product_type
- geo_loc_name
- IFSAC_category
- lat_lon
- project_name
- seq_meth
slot_usage:
HACCP_term:
name: HACCP_term
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
- FoodHumanFoods
IFSAC_category:
name: IFSAC_category
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
required: true
bacterial_density:
name: bacterial_density
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
- FoodHumanFoods
coll_site_geo_feat:
name: coll_site_geo_feat
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
- FoodHumanFoods
required: true
collection_date:
name: collection_date
domain_of:
- Checklist
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- Miuvig
- SymbiontAssociated
required: true
cons_food_stor_dur:
name: cons_food_stor_dur
domain_of:
- FoodAnimalAndAnimalFeed
- FoodHumanFoods
cons_food_stor_temp:
name: cons_food_stor_temp
domain_of:
- FoodAnimalAndAnimalFeed
- FoodHumanFoods
cons_purch_date:
name: cons_purch_date
domain_of:
- FoodAnimalAndAnimalFeed
- FoodHumanFoods
cons_qty_purchased:
name: cons_qty_purchased
domain_of:
- FoodAnimalAndAnimalFeed
- FoodHumanFoods
cult_isol_date:
name: cult_isol_date
domain_of:
- Agriculture
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
cult_result:
name: cult_result
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
cult_result_org:
name: cult_result_org
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
cult_target:
name: cult_target
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
dietary_claim_use:
name: dietary_claim_use
domain_of:
- FoodFoodProductionFacility
- FoodHumanFoods
enrichment_protocol:
name: enrichment_protocol
domain_of:
- Agriculture
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
env_broad_scale:
name: env_broad_scale
domain_of:
- Checklist
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- Miuvig
- SymbiontAssociated
required: true
env_local_scale:
name: env_local_scale
domain_of:
- Checklist
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- Miuvig
- SymbiontAssociated
required: true
env_medium:
name: env_medium
domain_of:
- Checklist
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- Miuvig
- SymbiontAssociated
required: true
experimental_factor:
name: experimental_factor
domain_of:
- Checklist
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
- FoodHumanFoods
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- Miuvig
ferm_chem_add:
name: ferm_chem_add
domain_of:
- FoodHumanFoods
recommended: true
ferm_chem_add_perc:
name: ferm_chem_add_perc
domain_of:
- FoodHumanFoods
recommended: true
ferm_headspace_oxy:
name: ferm_headspace_oxy
domain_of:
- FoodHumanFoods
recommended: true
ferm_medium:
name: ferm_medium
domain_of:
- FoodHumanFoods
recommended: true
ferm_pH:
name: ferm_pH
domain_of:
- FoodHumanFoods
recommended: true
ferm_rel_humidity:
name: ferm_rel_humidity
domain_of:
- FoodHumanFoods
recommended: true
ferm_temp:
name: ferm_temp
domain_of:
- FoodHumanFoods
recommended: true
ferm_time:
name: ferm_time
domain_of:
- FoodHumanFoods
recommended: true
ferm_vessel:
name: ferm_vessel
domain_of:
- FoodHumanFoods
recommended: true
food_additive:
name: food_additive
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
- FoodHumanFoods
food_allergen_label:
name: food_allergen_label
domain_of:
- FoodFoodProductionFacility
- FoodHumanFoods
food_contact_surf:
name: food_contact_surf
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
food_contain_wrap:
name: food_contain_wrap
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
food_cooking_proc:
name: food_cooking_proc
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
- FoodHumanFoods
food_dis_point:
name: food_dis_point
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
- FoodHumanFoods
food_ingredient:
name: food_ingredient
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
- FoodHumanFoods
food_name_status:
name: food_name_status
domain_of:
- FoodFoodProductionFacility
- FoodHumanFoods
food_origin:
name: food_origin
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
- FoodHumanFoods
food_pack_capacity:
name: food_pack_capacity
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
- FoodHumanFoods
food_pack_integrity:
name: food_pack_integrity
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
- FoodHumanFoods
food_pack_medium:
name: food_pack_medium
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
food_preserv_proc:
name: food_preserv_proc
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
food_prior_contact:
name: food_prior_contact
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
- FoodHumanFoods
food_prod:
name: food_prod
domain_of:
- Agriculture
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
- FoodHumanFoods
food_prod_synonym:
name: food_prod_synonym
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
- FoodHumanFoods
food_product_qual:
name: food_product_qual
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
- FoodHumanFoods
food_product_type:
name: food_product_type
domain_of:
- Agriculture
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
required: true
food_quality_date:
name: food_quality_date
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
food_source:
name: food_source
domain_of:
- Agriculture
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
food_trace_list:
name: food_trace_list
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
- FoodHumanFoods
food_trav_mode:
name: food_trav_mode
domain_of:
- Agriculture
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
food_trav_vehic:
name: food_trav_vehic
domain_of:
- Agriculture
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
food_treat_proc:
name: food_treat_proc
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
genetic_mod:
name: genetic_mod
domain_of:
- Agriculture
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
- HostAssociated
- PlantAssociated
geo_loc_name:
name: geo_loc_name
domain_of:
- Checklist
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- Miuvig
- SymbiontAssociated
required: true
intended_consumer:
name: intended_consumer
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
lat_lon:
name: lat_lon
domain_of:
- Checklist
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- Miuvig
- SymbiontAssociated
required: true
library_prep_kit:
name: library_prep_kit
domain_of:
- Agriculture
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
lot_number:
name: lot_number
domain_of:
- Agriculture
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
microb_cult_med:
name: microb_cult_med
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
- FoodHumanFoods
microb_start:
name: microb_start
domain_of:
- FoodHumanFoods
microb_start_count:
name: microb_start_count
domain_of:
- FoodHumanFoods
microb_start_inoc:
name: microb_start_inoc
domain_of:
- FoodHumanFoods
microb_start_prep:
name: microb_start_prep
domain_of:
- FoodHumanFoods
microb_start_source:
name: microb_start_source
domain_of:
- FoodHumanFoods
microb_start_taxID:
name: microb_start_taxID
domain_of:
- FoodHumanFoods
misc_param:
name: misc_param
domain_of:
- Agriculture
- Air
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
- HostAssociated
- HumanAssociated
- HumanGut
- HumanOral
- HumanSkin
- HumanVaginal
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- PlantAssociated
- Sediment
- Soil
- SymbiontAssociated
- WastewaterSludge
- Water
nucl_acid_ext:
name: nucl_acid_ext
domain_of:
- Agriculture
- Checklist
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- Miuvig
nucl_acid_ext_kit:
name: nucl_acid_ext_kit
domain_of:
- FoodFoodProductionFacility
- FoodHumanFoods
num_samp_collect:
name: num_samp_collect
domain_of:
- FoodFoodProductionFacility
- FoodHumanFoods
organism_count:
name: organism_count
domain_of:
- Agriculture
- Air
- BuiltEnvironment
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
- HostAssociated
- HumanAssociated
- HumanGut
- HumanOral
- HumanSkin
- HumanVaginal
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- PlantAssociated
- Sediment
- SymbiontAssociated
- WastewaterSludge
- Water
part_plant_animal:
name: part_plant_animal
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
perturbation:
name: perturbation
domain_of:
- Agriculture
- Air
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodHumanFoods
- HostAssociated
- HumanAssociated
- HumanGut
- HumanOral
- HumanSkin
- HumanVaginal
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- PlantAssociated
- Sediment
- SymbiontAssociated
- WastewaterSludge
- Water
pool_dna_extracts:
name: pool_dna_extracts
domain_of:
- Agriculture
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
- FoodHumanFoods
- Soil
project_name:
name: project_name
domain_of:
- Air
- BuiltEnvironment
- Checklist
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
- HostAssociated
- HumanAssociated
- HumanGut
- HumanOral
- HumanSkin
- HumanVaginal
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- MicrobialMatBiofilm
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- MiscellaneousNaturalOrArtificialEnvironment
- Miuvig
- PlantAssociated
- Sediment
- Soil
- SymbiontAssociated
- WastewaterSludge
- Water
required: true
repository_name:
name: repository_name
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
samp_pooling:
name: samp_pooling
domain_of:
- Agriculture
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
samp_purpose:
name: samp_purpose
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
samp_rep_biol:
name: samp_rep_biol
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
- FoodHumanFoods
samp_rep_tech:
name: samp_rep_tech
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
- FoodHumanFoods
samp_size:
name: samp_size
domain_of:
- Agriculture
- Checklist
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- Miuvig
samp_source_mat_cat:
name: samp_source_mat_cat
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
samp_stor_device:
name: samp_stor_device
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
- FoodHumanFoods
samp_stor_media:
name: samp_stor_media
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
- FoodHumanFoods
samp_store_dur:
name: samp_store_dur
domain_of:
- Agriculture
- Air
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
- HostAssociated
- HumanAssociated
- HumanGut
- HumanOral
- HumanSkin
- HumanVaginal
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- PlantAssociated
- Sediment
- SymbiontAssociated
- WastewaterSludge
- Water
samp_store_loc:
name: samp_store_loc
domain_of:
- Agriculture
- Air
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
- FoodHumanFoods
- HostAssociated
- HumanAssociated
- HumanGut
- HumanOral
- HumanSkin
- HumanVaginal
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- PlantAssociated
- Sediment
- SymbiontAssociated
- WastewaterSludge
- Water
samp_store_temp:
name: samp_store_temp
domain_of:
- Agriculture
- Air
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
- HostAssociated
- HumanAssociated
- HumanGut
- HumanOral
- HumanSkin
- HumanVaginal
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- PlantAssociated
- Sediment
- SymbiontAssociated
- WastewaterSludge
- Water
samp_transport_cont:
name: samp_transport_cont
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
- FoodHumanFoods
samp_transport_dur:
name: samp_transport_dur
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
- FoodHumanFoods
samp_transport_temp:
name: samp_transport_temp
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
- FoodHumanFoods
samp_vol_we_dna_ext:
name: samp_vol_we_dna_ext
domain_of:
- Agriculture
- Air
- Checklist
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
- HostAssociated
- HumanAssociated
- HumanGut
- HumanOral
- HumanSkin
- HumanVaginal
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- MicrobialMatBiofilm
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- MiscellaneousNaturalOrArtificialEnvironment
- Miuvig
- PlantAssociated
- Sediment
- Soil
- SymbiontAssociated
- WastewaterSludge
- Water
seq_meth:
name: seq_meth
domain_of:
- Agriculture
- Checklist
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- Miuvig
required: true
sequencing_kit:
name: sequencing_kit
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
sequencing_location:
name: sequencing_location
domain_of:
- Agriculture
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
serovar_or_serotype:
name: serovar_or_serotype
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodHumanFoods
spikein_AMR:
name: spikein_AMR
domain_of:
- FoodAnimalAndAnimalFeed
- FoodHumanFoods
spikein_antibiotic:
name: spikein_antibiotic
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodHumanFoods
spikein_count:
name: spikein_count
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodHumanFoods
spikein_growth_med:
name: spikein_growth_med
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodHumanFoods
spikein_metal:
name: spikein_metal
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodHumanFoods
spikein_org:
name: spikein_org
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodHumanFoods
spikein_serovar:
name: spikein_serovar
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodHumanFoods
spikein_strain:
name: spikein_strain
domain_of:
- Agriculture
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodHumanFoods
study_design:
name: study_design
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
- FoodHumanFoods
study_inc_dur:
name: study_inc_dur
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
- FoodHumanFoods
study_inc_temp:
name: study_inc_temp
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
- FoodHumanFoods
study_timecourse:
name: study_timecourse
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
- FoodHumanFoods
study_tmnt:
name: study_tmnt
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
- FoodHumanFoods
temp:
name: temp
domain_of:
- Agriculture
- Air
- Checklist
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodHumanFoods
- HostAssociated
- HumanAssociated
- HumanGut
- HumanOral
- HumanSkin
- HumanVaginal
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- MicrobialMatBiofilm
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- MiscellaneousNaturalOrArtificialEnvironment
- Miuvig
- PlantAssociated
- Sediment
- Soil
- SymbiontAssociated
- WastewaterSludge
- Water
timepoint:
name: timepoint
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
class_uri: MIXS:0016022
Induced
name: FoodHumanFoods
description: placeholder description; linter will ignore this
title: food-human foods
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
is_a: EnvironmentalPackage
slot_usage:
HACCP_term:
name: HACCP_term
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
- FoodHumanFoods
IFSAC_category:
name: IFSAC_category
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
required: true
bacterial_density:
name: bacterial_density
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
- FoodHumanFoods
coll_site_geo_feat:
name: coll_site_geo_feat
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
- FoodHumanFoods
required: true
collection_date:
name: collection_date
domain_of:
- Checklist
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- Miuvig
- SymbiontAssociated
required: true
cons_food_stor_dur:
name: cons_food_stor_dur
domain_of:
- FoodAnimalAndAnimalFeed
- FoodHumanFoods
cons_food_stor_temp:
name: cons_food_stor_temp
domain_of:
- FoodAnimalAndAnimalFeed
- FoodHumanFoods
cons_purch_date:
name: cons_purch_date
domain_of:
- FoodAnimalAndAnimalFeed
- FoodHumanFoods
cons_qty_purchased:
name: cons_qty_purchased
domain_of:
- FoodAnimalAndAnimalFeed
- FoodHumanFoods
cult_isol_date:
name: cult_isol_date
domain_of:
- Agriculture
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
cult_result:
name: cult_result
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
cult_result_org:
name: cult_result_org
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
cult_target:
name: cult_target
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
dietary_claim_use:
name: dietary_claim_use
domain_of:
- FoodFoodProductionFacility
- FoodHumanFoods
enrichment_protocol:
name: enrichment_protocol
domain_of:
- Agriculture
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
env_broad_scale:
name: env_broad_scale
domain_of:
- Checklist
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- Miuvig
- SymbiontAssociated
required: true
env_local_scale:
name: env_local_scale
domain_of:
- Checklist
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- Miuvig
- SymbiontAssociated
required: true
env_medium:
name: env_medium
domain_of:
- Checklist
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- Miuvig
- SymbiontAssociated
required: true
experimental_factor:
name: experimental_factor
domain_of:
- Checklist
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
- FoodHumanFoods
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- Miuvig
ferm_chem_add:
name: ferm_chem_add
domain_of:
- FoodHumanFoods
recommended: true
ferm_chem_add_perc:
name: ferm_chem_add_perc
domain_of:
- FoodHumanFoods
recommended: true
ferm_headspace_oxy:
name: ferm_headspace_oxy
domain_of:
- FoodHumanFoods
recommended: true
ferm_medium:
name: ferm_medium
domain_of:
- FoodHumanFoods
recommended: true
ferm_pH:
name: ferm_pH
domain_of:
- FoodHumanFoods
recommended: true
ferm_rel_humidity:
name: ferm_rel_humidity
domain_of:
- FoodHumanFoods
recommended: true
ferm_temp:
name: ferm_temp
domain_of:
- FoodHumanFoods
recommended: true
ferm_time:
name: ferm_time
domain_of:
- FoodHumanFoods
recommended: true
ferm_vessel:
name: ferm_vessel
domain_of:
- FoodHumanFoods
recommended: true
food_additive:
name: food_additive
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
- FoodHumanFoods
food_allergen_label:
name: food_allergen_label
domain_of:
- FoodFoodProductionFacility
- FoodHumanFoods
food_contact_surf:
name: food_contact_surf
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
food_contain_wrap:
name: food_contain_wrap
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
food_cooking_proc:
name: food_cooking_proc
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
- FoodHumanFoods
food_dis_point:
name: food_dis_point
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
- FoodHumanFoods
food_ingredient:
name: food_ingredient
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
- FoodHumanFoods
food_name_status:
name: food_name_status
domain_of:
- FoodFoodProductionFacility
- FoodHumanFoods
food_origin:
name: food_origin
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
- FoodHumanFoods
food_pack_capacity:
name: food_pack_capacity
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
- FoodHumanFoods
food_pack_integrity:
name: food_pack_integrity
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
- FoodHumanFoods
food_pack_medium:
name: food_pack_medium
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
food_preserv_proc:
name: food_preserv_proc
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
food_prior_contact:
name: food_prior_contact
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
- FoodHumanFoods
food_prod:
name: food_prod
domain_of:
- Agriculture
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
- FoodHumanFoods
food_prod_synonym:
name: food_prod_synonym
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
- FoodHumanFoods
food_product_qual:
name: food_product_qual
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
- FoodHumanFoods
food_product_type:
name: food_product_type
domain_of:
- Agriculture
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
required: true
food_quality_date:
name: food_quality_date
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
food_source:
name: food_source
domain_of:
- Agriculture
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
food_trace_list:
name: food_trace_list
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
- FoodHumanFoods
food_trav_mode:
name: food_trav_mode
domain_of:
- Agriculture
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
food_trav_vehic:
name: food_trav_vehic
domain_of:
- Agriculture
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
food_treat_proc:
name: food_treat_proc
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
genetic_mod:
name: genetic_mod
domain_of:
- Agriculture
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
- HostAssociated
- PlantAssociated
geo_loc_name:
name: geo_loc_name
domain_of:
- Checklist
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- Miuvig
- SymbiontAssociated
required: true
intended_consumer:
name: intended_consumer
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
lat_lon:
name: lat_lon
domain_of:
- Checklist
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- Miuvig
- SymbiontAssociated
required: true
library_prep_kit:
name: library_prep_kit
domain_of:
- Agriculture
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
lot_number:
name: lot_number
domain_of:
- Agriculture
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
microb_cult_med:
name: microb_cult_med
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
- FoodHumanFoods
microb_start:
name: microb_start
domain_of:
- FoodHumanFoods
microb_start_count:
name: microb_start_count
domain_of:
- FoodHumanFoods
microb_start_inoc:
name: microb_start_inoc
domain_of:
- FoodHumanFoods
microb_start_prep:
name: microb_start_prep
domain_of:
- FoodHumanFoods
microb_start_source:
name: microb_start_source
domain_of:
- FoodHumanFoods
microb_start_taxID:
name: microb_start_taxID
domain_of:
- FoodHumanFoods
misc_param:
name: misc_param
domain_of:
- Agriculture
- Air
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
- HostAssociated
- HumanAssociated
- HumanGut
- HumanOral
- HumanSkin
- HumanVaginal
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- PlantAssociated
- Sediment
- Soil
- SymbiontAssociated
- WastewaterSludge
- Water
nucl_acid_ext:
name: nucl_acid_ext
domain_of:
- Agriculture
- Checklist
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- Miuvig
nucl_acid_ext_kit:
name: nucl_acid_ext_kit
domain_of:
- FoodFoodProductionFacility
- FoodHumanFoods
num_samp_collect:
name: num_samp_collect
domain_of:
- FoodFoodProductionFacility
- FoodHumanFoods
organism_count:
name: organism_count
domain_of:
- Agriculture
- Air
- BuiltEnvironment
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
- HostAssociated
- HumanAssociated
- HumanGut
- HumanOral
- HumanSkin
- HumanVaginal
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- PlantAssociated
- Sediment
- SymbiontAssociated
- WastewaterSludge
- Water
part_plant_animal:
name: part_plant_animal
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
perturbation:
name: perturbation
domain_of:
- Agriculture
- Air
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodHumanFoods
- HostAssociated
- HumanAssociated
- HumanGut
- HumanOral
- HumanSkin
- HumanVaginal
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- PlantAssociated
- Sediment
- SymbiontAssociated
- WastewaterSludge
- Water
pool_dna_extracts:
name: pool_dna_extracts
domain_of:
- Agriculture
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
- FoodHumanFoods
- Soil
project_name:
name: project_name
domain_of:
- Air
- BuiltEnvironment
- Checklist
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
- HostAssociated
- HumanAssociated
- HumanGut
- HumanOral
- HumanSkin
- HumanVaginal
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- MicrobialMatBiofilm
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- MiscellaneousNaturalOrArtificialEnvironment
- Miuvig
- PlantAssociated
- Sediment
- Soil
- SymbiontAssociated
- WastewaterSludge
- Water
required: true
repository_name:
name: repository_name
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
samp_pooling:
name: samp_pooling
domain_of:
- Agriculture
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
samp_purpose:
name: samp_purpose
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
samp_rep_biol:
name: samp_rep_biol
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
- FoodHumanFoods
samp_rep_tech:
name: samp_rep_tech
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
- FoodHumanFoods
samp_size:
name: samp_size
domain_of:
- Agriculture
- Checklist
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- Miuvig
samp_source_mat_cat:
name: samp_source_mat_cat
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
samp_stor_device:
name: samp_stor_device
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
- FoodHumanFoods
samp_stor_media:
name: samp_stor_media
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
- FoodHumanFoods
samp_store_dur:
name: samp_store_dur
domain_of:
- Agriculture
- Air
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
- HostAssociated
- HumanAssociated
- HumanGut
- HumanOral
- HumanSkin
- HumanVaginal
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- PlantAssociated
- Sediment
- SymbiontAssociated
- WastewaterSludge
- Water
samp_store_loc:
name: samp_store_loc
domain_of:
- Agriculture
- Air
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
- FoodHumanFoods
- HostAssociated
- HumanAssociated
- HumanGut
- HumanOral
- HumanSkin
- HumanVaginal
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- PlantAssociated
- Sediment
- SymbiontAssociated
- WastewaterSludge
- Water
samp_store_temp:
name: samp_store_temp
domain_of:
- Agriculture
- Air
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
- HostAssociated
- HumanAssociated
- HumanGut
- HumanOral
- HumanSkin
- HumanVaginal
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- PlantAssociated
- Sediment
- SymbiontAssociated
- WastewaterSludge
- Water
samp_transport_cont:
name: samp_transport_cont
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
- FoodHumanFoods
samp_transport_dur:
name: samp_transport_dur
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
- FoodHumanFoods
samp_transport_temp:
name: samp_transport_temp
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
- FoodHumanFoods
samp_vol_we_dna_ext:
name: samp_vol_we_dna_ext
domain_of:
- Agriculture
- Air
- Checklist
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
- HostAssociated
- HumanAssociated
- HumanGut
- HumanOral
- HumanSkin
- HumanVaginal
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- MicrobialMatBiofilm
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- MiscellaneousNaturalOrArtificialEnvironment
- Miuvig
- PlantAssociated
- Sediment
- Soil
- SymbiontAssociated
- WastewaterSludge
- Water
seq_meth:
name: seq_meth
domain_of:
- Agriculture
- Checklist
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- Miuvig
required: true
sequencing_kit:
name: sequencing_kit
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
sequencing_location:
name: sequencing_location
domain_of:
- Agriculture
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
serovar_or_serotype:
name: serovar_or_serotype
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodHumanFoods
spikein_AMR:
name: spikein_AMR
domain_of:
- FoodAnimalAndAnimalFeed
- FoodHumanFoods
spikein_antibiotic:
name: spikein_antibiotic
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodHumanFoods
spikein_count:
name: spikein_count
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodHumanFoods
spikein_growth_med:
name: spikein_growth_med
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodHumanFoods
spikein_metal:
name: spikein_metal
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodHumanFoods
spikein_org:
name: spikein_org
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodHumanFoods
spikein_serovar:
name: spikein_serovar
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodHumanFoods
spikein_strain:
name: spikein_strain
domain_of:
- Agriculture
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodHumanFoods
study_design:
name: study_design
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
- FoodHumanFoods
study_inc_dur:
name: study_inc_dur
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
- FoodHumanFoods
study_inc_temp:
name: study_inc_temp
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
- FoodHumanFoods
study_timecourse:
name: study_timecourse
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
- FoodHumanFoods
study_tmnt:
name: study_tmnt
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
- FoodHumanFoods
temp:
name: temp
domain_of:
- Agriculture
- Air
- Checklist
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodHumanFoods
- HostAssociated
- HumanAssociated
- HumanGut
- HumanOral
- HumanSkin
- HumanVaginal
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- MicrobialMatBiofilm
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- MiscellaneousNaturalOrArtificialEnvironment
- Miuvig
- PlantAssociated
- Sediment
- Soil
- SymbiontAssociated
- WastewaterSludge
- Water
timepoint:
name: timepoint
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
attributes:
ferm_chem_add:
name: ferm_chem_add
description: placeholder description; linter will ignore this
title: fermentation chemical additives
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0001185
alias: ferm_chem_add
owner: FoodHumanFoods
domain_of:
- FoodHumanFoods
range: string
recommended: true
ferm_chem_add_perc:
name: ferm_chem_add_perc
description: placeholder description; linter will ignore this
title: fermentation chemical additives percentage
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0001186
alias: ferm_chem_add_perc
owner: FoodHumanFoods
domain_of:
- FoodHumanFoods
range: string
recommended: true
ferm_headspace_oxy:
name: ferm_headspace_oxy
description: placeholder description; linter will ignore this
title: fermentation headspace oxygen
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0001187
alias: ferm_headspace_oxy
owner: FoodHumanFoods
domain_of:
- FoodHumanFoods
range: string
recommended: true
ferm_medium:
name: ferm_medium
description: placeholder description; linter will ignore this
title: fermentation medium
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0001188
alias: ferm_medium
owner: FoodHumanFoods
domain_of:
- FoodHumanFoods
range: string
recommended: true
pattern: '[^s\|][^\r\n\t\|]*'
structured_pattern:
syntax: '{free_text}'
ferm_pH:
name: ferm_pH
description: placeholder description; linter will ignore this
title: fermentation pH
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0001189
alias: ferm_pH
owner: FoodHumanFoods
domain_of:
- FoodHumanFoods
range: float
recommended: true
ferm_rel_humidity:
name: ferm_rel_humidity
description: placeholder description; linter will ignore this
title: fermentation relative humidity
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0001190
alias: ferm_rel_humidity
owner: FoodHumanFoods
domain_of:
- FoodHumanFoods
range: string
recommended: true
pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
structured_pattern:
syntax: '{float} {unit}'
ferm_temp:
name: ferm_temp
description: placeholder description; linter will ignore this
title: fermentation temperature
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0001191
alias: ferm_temp
owner: FoodHumanFoods
domain_of:
- FoodHumanFoods
range: string
recommended: true
pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
structured_pattern:
syntax: '{float} {unit}'
ferm_time:
name: ferm_time
description: placeholder description; linter will ignore this
title: fermentation time
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0001192
alias: ferm_time
owner: FoodHumanFoods
domain_of:
- FoodHumanFoods
range: string
recommended: true
ferm_vessel:
name: ferm_vessel
description: placeholder description; linter will ignore this
title: fermentation vessel
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0001193
alias: ferm_vessel
owner: FoodHumanFoods
domain_of:
- FoodHumanFoods
range: string
recommended: true
pattern: '[^s\|][^\r\n\t\|]*'
structured_pattern:
syntax: '{free_text}'
bacterial_density:
name: bacterial_density
description: placeholder description; linter will ignore this
title: bacteria density
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0001194
alias: bacterial_density
owner: FoodHumanFoods
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
- FoodHumanFoods
range: string
pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
structured_pattern:
syntax: '{float} {unit}'
cons_food_stor_dur:
name: cons_food_stor_dur
description: placeholder description; linter will ignore this
title: food stored by consumer (storage duration)
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0001195
alias: cons_food_stor_dur
owner: FoodHumanFoods
domain_of:
- FoodAnimalAndAnimalFeed
- FoodHumanFoods
range: string
cons_food_stor_temp:
name: cons_food_stor_temp
description: placeholder description; linter will ignore this
title: food stored by consumer (storage temperature)
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0001196
alias: cons_food_stor_temp
owner: FoodHumanFoods
domain_of:
- FoodAnimalAndAnimalFeed
- FoodHumanFoods
range: string
cons_purch_date:
name: cons_purch_date
description: placeholder description; linter will ignore this
title: purchase date
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0001197
alias: cons_purch_date
owner: FoodHumanFoods
domain_of:
- FoodAnimalAndAnimalFeed
- FoodHumanFoods
range: string
cons_qty_purchased:
name: cons_qty_purchased
description: placeholder description; linter will ignore this
title: quantity purchased
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0001198
alias: cons_qty_purchased
owner: FoodHumanFoods
domain_of:
- FoodAnimalAndAnimalFeed
- FoodHumanFoods
range: string
pattern: '[+-]?[1-9][0-9]* [^s\|][^\r\n\t\|]*'
structured_pattern:
syntax: '{integer} {unit}'
cult_isol_date:
name: cult_isol_date
description: placeholder description; linter will ignore this
title: culture isolation date
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0001181
alias: cult_isol_date
owner: FoodHumanFoods
domain_of:
- Agriculture
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
range: string
cult_result:
name: cult_result
description: placeholder description; linter will ignore this
title: culture result
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0001117
alias: cult_result
owner: FoodHumanFoods
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
range: string
cult_result_org:
name: cult_result_org
description: placeholder description; linter will ignore this
title: culture result organism
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0001118
alias: cult_result_org
owner: FoodHumanFoods
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
range: string
cult_target:
name: cult_target
description: placeholder description; linter will ignore this
title: culture target microbial analyte
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0001119
alias: cult_target
owner: FoodHumanFoods
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
range: string
dietary_claim_use:
name: dietary_claim_use
description: placeholder description; linter will ignore this
title: dietary claim or use
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0001199
alias: dietary_claim_use
owner: FoodHumanFoods
domain_of:
- FoodFoodProductionFacility
- FoodHumanFoods
range: string
enrichment_protocol:
name: enrichment_protocol
description: placeholder description; linter will ignore this
title: enrichment protocol
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0001177
alias: enrichment_protocol
owner: FoodHumanFoods
domain_of:
- Agriculture
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
range: string
pattern: (10.\d{4,9}/[-._;()/:a-zA-Z0-9]+)|(PMID:(\d{7,8}))|((?:https?://)?(?:www\.)?[\w-]+(?:\.[\w-]+)+[\w.,@?^=%&:/~+#-]*[\w@?^=%&/~+#-])|([^s\|][^\r\n\t\|]*)
structured_pattern:
syntax: ({DOI})|({PMID})|({URL})|({free_text})
experimental_factor:
name: experimental_factor
description: placeholder description; linter will ignore this
title: experimental factor
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000008
alias: experimental_factor
owner: FoodHumanFoods
domain_of:
- Checklist
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
- FoodHumanFoods
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- Miuvig
range: string
food_additive:
name: food_additive
description: placeholder description; linter will ignore this
title: food additive
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0001200
alias: food_additive
owner: FoodHumanFoods
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
- FoodHumanFoods
range: string
food_allergen_label:
name: food_allergen_label
description: placeholder description; linter will ignore this
title: food allergen labeling
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0001201
alias: food_allergen_label
owner: FoodHumanFoods
domain_of:
- FoodFoodProductionFacility
- FoodHumanFoods
range: string
food_contact_surf:
name: food_contact_surf
description: placeholder description; linter will ignore this
title: food contact surface
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0001131
alias: food_contact_surf
owner: FoodHumanFoods
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
range: string
food_contain_wrap:
name: food_contain_wrap
description: placeholder description; linter will ignore this
title: food container or wrapping
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0001132
alias: food_contain_wrap
owner: FoodHumanFoods
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
range: string
food_cooking_proc:
name: food_cooking_proc
description: placeholder description; linter will ignore this
title: food cooking process
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0001202
alias: food_cooking_proc
owner: FoodHumanFoods
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
- FoodHumanFoods
range: string
food_dis_point:
name: food_dis_point
description: placeholder description; linter will ignore this
title: food distribution point geographic location
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0001203
alias: food_dis_point
owner: FoodHumanFoods
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
- FoodHumanFoods
range: string
food_ingredient:
name: food_ingredient
description: placeholder description; linter will ignore this
title: food ingredient
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0001205
alias: food_ingredient
owner: FoodHumanFoods
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
- FoodHumanFoods
range: string
food_name_status:
name: food_name_status
description: placeholder description; linter will ignore this
title: food product name legal status
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0001206
alias: food_name_status
owner: FoodHumanFoods
domain_of:
- FoodFoodProductionFacility
- FoodHumanFoods
range: string
pattern: '[^s\|][^\r\n\t\|]* [[a-zA-Z]+:[0-9]+]'
structured_pattern:
syntax: '{term_label} [{term_id}]'
food_origin:
name: food_origin
description: placeholder description; linter will ignore this
title: food product origin geographic location
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0001207
alias: food_origin
owner: FoodHumanFoods
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
- FoodHumanFoods
range: string
food_pack_capacity:
name: food_pack_capacity
description: placeholder description; linter will ignore this
title: food package capacity
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0001208
alias: food_pack_capacity
owner: FoodHumanFoods
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
- FoodHumanFoods
range: string
pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
structured_pattern:
syntax: '{float} {unit}'
food_pack_integrity:
name: food_pack_integrity
description: placeholder description; linter will ignore this
title: food packing medium integrity
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0001209
alias: food_pack_integrity
owner: FoodHumanFoods
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
- FoodHumanFoods
range: string
food_pack_medium:
name: food_pack_medium
description: placeholder description; linter will ignore this
title: food packing medium
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0001134
alias: food_pack_medium
owner: FoodHumanFoods
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
range: string
food_preserv_proc:
name: food_preserv_proc
description: placeholder description; linter will ignore this
title: food preservation process
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0001135
alias: food_preserv_proc
owner: FoodHumanFoods
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
range: string
food_prior_contact:
name: food_prior_contact
description: placeholder description; linter will ignore this
title: material of contact prior to food packaging
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0001210
alias: food_prior_contact
owner: FoodHumanFoods
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
- FoodHumanFoods
range: string
food_prod:
name: food_prod
description: placeholder description; linter will ignore this
title: food production system characteristics
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0001211
alias: food_prod
owner: FoodHumanFoods
domain_of:
- Agriculture
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
- FoodHumanFoods
range: string
pattern: '[^s\|][^\r\n\t\|]* [[a-zA-Z]+:[0-9]+]'
structured_pattern:
syntax: '{term_label} [{term_id}]'
food_prod_synonym:
name: food_prod_synonym
description: placeholder description; linter will ignore this
title: food product synonym
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0001212
alias: food_prod_synonym
owner: FoodHumanFoods
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
- FoodHumanFoods
range: string
pattern: '[^s\|][^\r\n\t\|]*'
structured_pattern:
syntax: '{free_text}'
food_product_qual:
name: food_product_qual
description: placeholder description; linter will ignore this
title: food product by quality
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0001213
alias: food_product_qual
owner: FoodHumanFoods
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
- FoodHumanFoods
range: string
pattern: '[^s\|][^\r\n\t\|]* [[a-zA-Z]+:[0-9]+]'
structured_pattern:
syntax: '{term_label} [{term_id}]'
food_quality_date:
name: food_quality_date
description: placeholder description; linter will ignore this
title: food quality date
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0001178
alias: food_quality_date
owner: FoodHumanFoods
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
range: string
food_source:
name: food_source
description: placeholder description; linter will ignore this
title: food source
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0001139
alias: food_source
owner: FoodHumanFoods
domain_of:
- Agriculture
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
range: string
pattern: '[^s\|][^\r\n\t\|]* [[a-zA-Z]+:[0-9]+]'
structured_pattern:
syntax: '{term_label} [{term_id}]'
food_trace_list:
name: food_trace_list
description: placeholder description; linter will ignore this
title: food traceability list category
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0001214
alias: food_trace_list
owner: FoodHumanFoods
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
- FoodHumanFoods
range: string
food_trav_mode:
name: food_trav_mode
description: placeholder description; linter will ignore this
title: food shipping transportation method
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0001137
alias: food_trav_mode
owner: FoodHumanFoods
domain_of:
- Agriculture
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
range: string
pattern: '[^s\|][^\r\n\t\|]* [[a-zA-Z]+:[0-9]+]'
structured_pattern:
syntax: '{term_label} [{term_id}]'
food_trav_vehic:
name: food_trav_vehic
description: placeholder description; linter will ignore this
title: food shipping transportation vehicle
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0001138
alias: food_trav_vehic
owner: FoodHumanFoods
domain_of:
- Agriculture
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
range: string
food_treat_proc:
name: food_treat_proc
description: placeholder description; linter will ignore this
title: food treatment process
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0001140
alias: food_treat_proc
owner: FoodHumanFoods
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
range: string
genetic_mod:
name: genetic_mod
description: placeholder description; linter will ignore this
title: genetic modification
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000859
alias: genetic_mod
owner: FoodHumanFoods
domain_of:
- Agriculture
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
- HostAssociated
- PlantAssociated
range: string
pattern: (10.\d{4,9}/[-._;()/:a-zA-Z0-9]+)|(PMID:(\d{7,8}))|((?:https?://)?(?:www\.)?[\w-]+(?:\.[\w-]+)+[\w.,@?^=%&:/~+#-]*[\w@?^=%&/~+#-])|([^s\|][^\r\n\t\|]*)
structured_pattern:
syntax: ({DOI})|({PMID})|({URL})|({free_text})
HACCP_term:
name: HACCP_term
description: placeholder description; linter will ignore this
title: Hazard Analysis Critical Control Points (HACCP) guide food safety term
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0001215
alias: HACCP_term
owner: FoodHumanFoods
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
- FoodHumanFoods
range: string
pattern: '[^s\|][^\r\n\t\|]* [[a-zA-Z]+:[0-9]+]'
structured_pattern:
syntax: '{term_label} [{term_id}]'
intended_consumer:
name: intended_consumer
description: placeholder description; linter will ignore this
title: intended consumer
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0001144
alias: intended_consumer
owner: FoodHumanFoods
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
range: string
library_prep_kit:
name: library_prep_kit
description: placeholder description; linter will ignore this
title: library preparation kit
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0001145
alias: library_prep_kit
owner: FoodHumanFoods
domain_of:
- Agriculture
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
range: string
pattern: '[^s\|][^\r\n\t\|]*'
structured_pattern:
syntax: '{free_text}'
lot_number:
name: lot_number
description: placeholder description; linter will ignore this
title: lot number
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0001147
alias: lot_number
owner: FoodHumanFoods
domain_of:
- Agriculture
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
range: string
microb_cult_med:
name: microb_cult_med
description: placeholder description; linter will ignore this
title: microbiological culture medium
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0001216
alias: microb_cult_med
owner: FoodHumanFoods
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
- FoodHumanFoods
range: string
microb_start:
name: microb_start
description: placeholder description; linter will ignore this
title: microbial starter
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0001217
alias: microb_start
owner: FoodHumanFoods
domain_of:
- FoodHumanFoods
range: string
microb_start_count:
name: microb_start_count
description: placeholder description; linter will ignore this
title: microbial starter organism count
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0001218
alias: microb_start_count
owner: FoodHumanFoods
domain_of:
- FoodHumanFoods
range: string
microb_start_inoc:
name: microb_start_inoc
description: placeholder description; linter will ignore this
title: microbial starter inoculation
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0001219
alias: microb_start_inoc
owner: FoodHumanFoods
domain_of:
- FoodHumanFoods
range: string
pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
structured_pattern:
syntax: '{float} {unit}'
microb_start_prep:
name: microb_start_prep
description: placeholder description; linter will ignore this
title: microbial starter preparation
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0001220
alias: microb_start_prep
owner: FoodHumanFoods
domain_of:
- FoodHumanFoods
range: string
pattern: '[^s\|][^\r\n\t\|]*'
structured_pattern:
syntax: '{free_text}'
microb_start_source:
name: microb_start_source
description: placeholder description; linter will ignore this
title: microbial starter source
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0001221
alias: microb_start_source
owner: FoodHumanFoods
domain_of:
- FoodHumanFoods
range: string
pattern: '[^s\|][^\r\n\t\|]*'
structured_pattern:
syntax: '{free_text}'
microb_start_taxID:
name: microb_start_taxID
description: placeholder description; linter will ignore this
title: microbial starter NCBI taxonomy ID
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0001222
alias: microb_start_taxID
owner: FoodHumanFoods
domain_of:
- FoodHumanFoods
range: string
misc_param:
name: misc_param
description: placeholder description; linter will ignore this
title: miscellaneous parameter
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000752
alias: misc_param
owner: FoodHumanFoods
domain_of:
- Agriculture
- Air
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
- HostAssociated
- HumanAssociated
- HumanGut
- HumanOral
- HumanSkin
- HumanVaginal
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- PlantAssociated
- Sediment
- Soil
- SymbiontAssociated
- WastewaterSludge
- Water
range: string
pattern: (([^s\|][^\r\n\t\|]*;[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*)\\|)*([^s\|][^\r\n\t\|]*;[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)?
[^s\|][^\r\n\t\|]*)
structured_pattern:
syntax: (({free_text};{float} {unit})\\|)*({free_text};{float} {unit})
nucl_acid_ext:
name: nucl_acid_ext
description: placeholder description; linter will ignore this
title: nucleic acid extraction
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000037
alias: nucl_acid_ext
owner: FoodHumanFoods
domain_of:
- Agriculture
- Checklist
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- Miuvig
range: string
pattern: (10.\d{4,9}/[-._;()/:a-zA-Z0-9]+)|(PMID:(\d{7,8}))|((?:https?://)?(?:www\.)?[\w-]+(?:\.[\w-]+)+[\w.,@?^=%&:/~+#-]*[\w@?^=%&/~+#-])
structured_pattern:
syntax: ({DOI})|({PMID})|({URL})
nucl_acid_ext_kit:
name: nucl_acid_ext_kit
description: placeholder description; linter will ignore this
title: nucleic acid extraction kit
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0001223
alias: nucl_acid_ext_kit
owner: FoodHumanFoods
domain_of:
- FoodFoodProductionFacility
- FoodHumanFoods
range: string
pattern: '[^s\|][^\r\n\t\|]*'
structured_pattern:
syntax: '{free_text}'
num_samp_collect:
name: num_samp_collect
description: placeholder description; linter will ignore this
title: number of samples collected
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0001224
alias: num_samp_collect
owner: FoodHumanFoods
domain_of:
- FoodFoodProductionFacility
- FoodHumanFoods
range: string
pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
structured_pattern:
syntax: '{float} {unit}'
organism_count:
name: organism_count
description: placeholder description; linter will ignore this
title: organism count
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000103
alias: organism_count
owner: FoodHumanFoods
domain_of:
- Agriculture
- Air
- BuiltEnvironment
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
- HostAssociated
- HumanAssociated
- HumanGut
- HumanOral
- HumanSkin
- HumanVaginal
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- PlantAssociated
- Sediment
- SymbiontAssociated
- WastewaterSludge
- Water
range: string
part_plant_animal:
name: part_plant_animal
description: placeholder description; linter will ignore this
title: part of plant or animal
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0001149
alias: part_plant_animal
owner: FoodHumanFoods
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
range: string
perturbation:
name: perturbation
description: placeholder description; linter will ignore this
title: perturbation
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000754
alias: perturbation
owner: FoodHumanFoods
domain_of:
- Agriculture
- Air
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodHumanFoods
- HostAssociated
- HumanAssociated
- HumanGut
- HumanOral
- HumanSkin
- HumanVaginal
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- PlantAssociated
- Sediment
- SymbiontAssociated
- WastewaterSludge
- Water
range: string
pool_dna_extracts:
name: pool_dna_extracts
description: placeholder description; linter will ignore this
title: pooling of DNA extracts (if done)
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000325
alias: pool_dna_extracts
owner: FoodHumanFoods
domain_of:
- Agriculture
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
- FoodHumanFoods
- Soil
range: string
repository_name:
name: repository_name
description: placeholder description; linter will ignore this
title: repository name
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0001152
alias: repository_name
owner: FoodHumanFoods
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
range: string
pattern: '[^s\|][^\r\n\t\|]*'
structured_pattern:
syntax: '{free_text}'
samp_pooling:
name: samp_pooling
description: placeholder description; linter will ignore this
title: sample pooling
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0001153
alias: samp_pooling
owner: FoodHumanFoods
domain_of:
- Agriculture
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
range: string
pattern: '[^s\|][^\r\n\t\|]*'
structured_pattern:
syntax: '{free_text}'
samp_purpose:
name: samp_purpose
description: placeholder description; linter will ignore this
title: purpose of sampling
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0001151
alias: samp_purpose
owner: FoodHumanFoods
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
range: string
samp_rep_biol:
name: samp_rep_biol
description: placeholder description; linter will ignore this
title: biological sample replicate
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0001226
alias: samp_rep_biol
owner: FoodHumanFoods
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
- FoodHumanFoods
range: string
pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
structured_pattern:
syntax: '{float} {unit}'
samp_rep_tech:
name: samp_rep_tech
description: placeholder description; linter will ignore this
title: technical sample replicate
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0001227
alias: samp_rep_tech
owner: FoodHumanFoods
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
- FoodHumanFoods
range: string
pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
structured_pattern:
syntax: '{float} {unit}'
samp_size:
name: samp_size
description: placeholder description; linter will ignore this
title: amount or size of sample collected
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000001
alias: samp_size
owner: FoodHumanFoods
domain_of:
- Agriculture
- Checklist
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- Miuvig
range: string
pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
structured_pattern:
syntax: '{float} {unit}'
samp_source_mat_cat:
name: samp_source_mat_cat
description: placeholder description; linter will ignore this
title: sample source material category
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0001154
alias: samp_source_mat_cat
owner: FoodHumanFoods
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
range: string
pattern: '[^s\|][^\r\n\t\|]* [[a-zA-Z]+:[0-9]+]'
structured_pattern:
syntax: '{term_label} [{term_id}]'
samp_stor_device:
name: samp_stor_device
description: placeholder description; linter will ignore this
title: sample storage device
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0001228
alias: samp_stor_device
owner: FoodHumanFoods
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
- FoodHumanFoods
range: string
samp_stor_media:
name: samp_stor_media
description: placeholder description; linter will ignore this
title: sample storage media
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0001229
alias: samp_stor_media
owner: FoodHumanFoods
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
- FoodHumanFoods
range: string
samp_store_dur:
name: samp_store_dur
description: placeholder description; linter will ignore this
title: sample storage duration
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000116
alias: samp_store_dur
owner: FoodHumanFoods
domain_of:
- Agriculture
- Air
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
- HostAssociated
- HumanAssociated
- HumanGut
- HumanOral
- HumanSkin
- HumanVaginal
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- PlantAssociated
- Sediment
- SymbiontAssociated
- WastewaterSludge
- Water
range: string
pattern: P(?=\d+[YMWD])(\d+Y)?(\d+M)?(\d+W)?(\d+D)?(T(?=\d+[HMS])(\d+H)?(\d+M)?(\d+S)?)?
structured_pattern:
syntax: '{period}'
samp_store_loc:
name: samp_store_loc
description: placeholder description; linter will ignore this
title: sample storage location
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000755
alias: samp_store_loc
owner: FoodHumanFoods
domain_of:
- Agriculture
- Air
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
- FoodHumanFoods
- HostAssociated
- HumanAssociated
- HumanGut
- HumanOral
- HumanSkin
- HumanVaginal
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- PlantAssociated
- Sediment
- SymbiontAssociated
- WastewaterSludge
- Water
range: string
pattern: '[^s\|][^\r\n\t\|]*'
structured_pattern:
syntax: '{free_text}'
samp_store_temp:
name: samp_store_temp
description: placeholder description; linter will ignore this
title: sample storage temperature
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000110
alias: samp_store_temp
owner: FoodHumanFoods
domain_of:
- Agriculture
- Air
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
- HostAssociated
- HumanAssociated
- HumanGut
- HumanOral
- HumanSkin
- HumanVaginal
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- PlantAssociated
- Sediment
- SymbiontAssociated
- WastewaterSludge
- Water
range: string
pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
structured_pattern:
syntax: '{float} {unit}'
samp_transport_cont:
name: samp_transport_cont
description: placeholder description; linter will ignore this
title: sample transport container
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0001230
alias: samp_transport_cont
owner: FoodHumanFoods
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
- FoodHumanFoods
range: string
samp_transport_dur:
name: samp_transport_dur
description: placeholder description; linter will ignore this
title: sample transport duration
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0001231
alias: samp_transport_dur
owner: FoodHumanFoods
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
- FoodHumanFoods
range: string
samp_transport_temp:
name: samp_transport_temp
description: placeholder description; linter will ignore this
title: sample transport temperature
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0001232
alias: samp_transport_temp
owner: FoodHumanFoods
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
- FoodHumanFoods
range: string
samp_vol_we_dna_ext:
name: samp_vol_we_dna_ext
description: placeholder description; linter will ignore this
title: sample volume or weight for DNA extraction
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000111
alias: samp_vol_we_dna_ext
owner: FoodHumanFoods
domain_of:
- Agriculture
- Air
- Checklist
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
- HostAssociated
- HumanAssociated
- HumanGut
- HumanOral
- HumanSkin
- HumanVaginal
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- MicrobialMatBiofilm
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- MiscellaneousNaturalOrArtificialEnvironment
- Miuvig
- PlantAssociated
- Sediment
- Soil
- SymbiontAssociated
- WastewaterSludge
- Water
range: string
pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
structured_pattern:
syntax: '{float} {unit}'
sequencing_kit:
name: sequencing_kit
description: placeholder description; linter will ignore this
title: sequencing kit
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0001155
alias: sequencing_kit
owner: FoodHumanFoods
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
range: string
pattern: '[^s\|][^\r\n\t\|]*'
structured_pattern:
syntax: '{free_text}'
sequencing_location:
name: sequencing_location
description: placeholder description; linter will ignore this
title: sequencing location
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0001156
alias: sequencing_location
owner: FoodHumanFoods
domain_of:
- Agriculture
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
range: string
pattern: '[^s\|][^\r\n\t\|]*'
structured_pattern:
syntax: '{free_text}'
serovar_or_serotype:
name: serovar_or_serotype
description: placeholder description; linter will ignore this
title: serovar or serotype
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0001157
alias: serovar_or_serotype
owner: FoodHumanFoods
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodHumanFoods
range: string
spikein_AMR:
name: spikein_AMR
description: placeholder description; linter will ignore this
title: antimicrobial phenotype of spike-in bacteria
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0001235
alias: spikein_AMR
owner: FoodHumanFoods
domain_of:
- FoodAnimalAndAnimalFeed
- FoodHumanFoods
range: string
spikein_antibiotic:
name: spikein_antibiotic
description: placeholder description; linter will ignore this
title: spike-in with antibiotics
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0001171
alias: spikein_antibiotic
owner: FoodHumanFoods
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodHumanFoods
range: string
spikein_count:
name: spikein_count
description: placeholder description; linter will ignore this
title: spike-in organism count
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0001335
alias: spikein_count
owner: FoodHumanFoods
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodHumanFoods
range: string
spikein_growth_med:
name: spikein_growth_med
description: placeholder description; linter will ignore this
title: spike-in growth medium
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0001169
alias: spikein_growth_med
owner: FoodHumanFoods
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodHumanFoods
range: string
spikein_metal:
name: spikein_metal
description: placeholder description; linter will ignore this
title: spike-in with heavy metals
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0001172
alias: spikein_metal
owner: FoodHumanFoods
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodHumanFoods
range: string
spikein_org:
name: spikein_org
description: placeholder description; linter will ignore this
title: spike in organism
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0001167
alias: spikein_org
owner: FoodHumanFoods
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodHumanFoods
range: string
spikein_serovar:
name: spikein_serovar
description: placeholder description; linter will ignore this
title: spike-in bacterial serovar or serotype
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0001168
alias: spikein_serovar
owner: FoodHumanFoods
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodHumanFoods
range: string
spikein_strain:
name: spikein_strain
description: placeholder description; linter will ignore this
title: spike-in microbial strain
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0001170
alias: spikein_strain
owner: FoodHumanFoods
domain_of:
- Agriculture
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodHumanFoods
range: string
study_design:
name: study_design
description: placeholder description; linter will ignore this
title: study design
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0001236
alias: study_design
owner: FoodHumanFoods
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
- FoodHumanFoods
range: string
study_inc_dur:
name: study_inc_dur
description: placeholder description; linter will ignore this
title: study incubation duration
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0001237
alias: study_inc_dur
owner: FoodHumanFoods
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
- FoodHumanFoods
range: string
study_inc_temp:
name: study_inc_temp
description: placeholder description; linter will ignore this
title: study incubation temperature
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0001238
alias: study_inc_temp
owner: FoodHumanFoods
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
- FoodHumanFoods
range: string
pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
structured_pattern:
syntax: '{float} {unit}'
study_timecourse:
name: study_timecourse
description: placeholder description; linter will ignore this
title: time-course duration
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0001239
alias: study_timecourse
owner: FoodHumanFoods
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
- FoodHumanFoods
range: string
pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
structured_pattern:
syntax: '{float} {unit}'
study_tmnt:
name: study_tmnt
description: placeholder description; linter will ignore this
title: study treatment
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0001240
alias: study_tmnt
owner: FoodHumanFoods
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
- FoodHumanFoods
range: string
temp:
name: temp
description: placeholder description; linter will ignore this
title: temperature
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000113
alias: temp
owner: FoodHumanFoods
domain_of:
- Agriculture
- Air
- Checklist
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodHumanFoods
- HostAssociated
- HumanAssociated
- HumanGut
- HumanOral
- HumanSkin
- HumanVaginal
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- MicrobialMatBiofilm
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- MiscellaneousNaturalOrArtificialEnvironment
- Miuvig
- PlantAssociated
- Sediment
- Soil
- SymbiontAssociated
- WastewaterSludge
- Water
range: string
pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
structured_pattern:
syntax: '{float} {unit}'
timepoint:
name: timepoint
description: placeholder description; linter will ignore this
title: timepoint
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0001173
alias: timepoint
owner: FoodHumanFoods
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
range: string
coll_site_geo_feat:
name: coll_site_geo_feat
description: placeholder description; linter will ignore this
title: collection site geographic feature
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0001183
alias: coll_site_geo_feat
owner: FoodHumanFoods
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
- FoodHumanFoods
range: string
required: true
collection_date:
name: collection_date
description: placeholder description; linter will ignore this
title: collection date
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000011
alias: collection_date
owner: FoodHumanFoods
domain_of:
- Checklist
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- Miuvig
- SymbiontAssociated
range: string
required: true
env_broad_scale:
name: env_broad_scale
description: placeholder description; linter will ignore this
title: broad-scale environmental context
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000012
alias: env_broad_scale
owner: FoodHumanFoods
domain_of:
- Checklist
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- Miuvig
- SymbiontAssociated
range: string
required: true
pattern: '[^s\|][^\r\n\t\|]* [[a-zA-Z]+:[0-9]+]'
structured_pattern:
syntax: '{term_label} [{term_id}]'
env_local_scale:
name: env_local_scale
description: placeholder description; linter will ignore this
title: local environmental context
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000013
alias: env_local_scale
owner: FoodHumanFoods
domain_of:
- Checklist
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- Miuvig
- SymbiontAssociated
range: string
required: true
pattern: '[^s\|][^\r\n\t\|]* [[a-zA-Z]+:[0-9]+]'
structured_pattern:
syntax: '{term_label} [{term_id}]'
env_medium:
name: env_medium
description: placeholder description; linter will ignore this
title: environmental medium
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000014
alias: env_medium
owner: FoodHumanFoods
domain_of:
- Checklist
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- Miuvig
- SymbiontAssociated
range: string
required: true
pattern: '[^s\|][^\r\n\t\|]* [[a-zA-Z]+:[0-9]+]'
structured_pattern:
syntax: '{term_label} [{term_id}]'
food_product_type:
name: food_product_type
description: placeholder description; linter will ignore this
title: food product type
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0001184
alias: food_product_type
owner: FoodHumanFoods
domain_of:
- Agriculture
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
range: string
required: true
geo_loc_name:
name: geo_loc_name
description: placeholder description; linter will ignore this
title: geographic location (country and/or sea,region)
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000010
alias: geo_loc_name
owner: FoodHumanFoods
domain_of:
- Checklist
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- Miuvig
- SymbiontAssociated
range: string
required: true
pattern: '[^s\|][^\r\n\t\|]*: [^s\|][^\r\n\t\|]*, [^s\|][^\r\n\t\|]*'
structured_pattern:
syntax: '{term}: {term}, {free_text}'
IFSAC_category:
name: IFSAC_category
description: placeholder description; linter will ignore this
title: Interagency Food Safety Analytics Collaboration (IFSAC) category
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0001179
alias: IFSAC_category
owner: FoodHumanFoods
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
range: string
required: true
pattern: '[^s\|][^\r\n\t\|]*'
structured_pattern:
syntax: '{free_text}'
lat_lon:
name: lat_lon
description: placeholder description; linter will ignore this
title: geographic location (latitude and longitude)
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000009
alias: lat_lon
owner: FoodHumanFoods
domain_of:
- Checklist
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- Miuvig
- SymbiontAssociated
range: string
required: true
pattern: '[-+]?([1-8]?\d(\.\d+)?|90(\.0+)?) [-+]?(180(\.0+)?|((1[0-7]\d)|([1-9]?\d))(\.\d+)?)'
structured_pattern:
syntax: '{lat} {lon}'
project_name:
name: project_name
description: placeholder description; linter will ignore this
title: project name
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000092
alias: project_name
owner: FoodHumanFoods
domain_of:
- Air
- BuiltEnvironment
- Checklist
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
- HostAssociated
- HumanAssociated
- HumanGut
- HumanOral
- HumanSkin
- HumanVaginal
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- MicrobialMatBiofilm
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- MiscellaneousNaturalOrArtificialEnvironment
- Miuvig
- PlantAssociated
- Sediment
- Soil
- SymbiontAssociated
- WastewaterSludge
- Water
range: string
required: true
pattern: '[^s\|][^\r\n\t\|]*'
structured_pattern:
syntax: '{free_text}'
seq_meth:
name: seq_meth
description: placeholder description; linter will ignore this
title: sequencing method
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000050
alias: seq_meth
owner: FoodHumanFoods
domain_of:
- Agriculture
- Checklist
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- Miuvig
range: string
required: true
class_uri: MIXS:0016022