Class: FoodFoodProductionFacility
placeholder description; linter will ignore this
URI: MIXS:0016021
classDiagram
class FoodFoodProductionFacility
EnvironmentalPackage <|-- FoodFoodProductionFacility
FoodFoodProductionFacility : air_temp
FoodFoodProductionFacility : area_samp_size
FoodFoodProductionFacility : avg_occup
FoodFoodProductionFacility : bacterial_density
FoodFoodProductionFacility : biocide_used
FoodFoodProductionFacility : coll_site_geo_feat
FoodFoodProductionFacility : collection_date
FoodFoodProductionFacility : cult_isol_date
FoodFoodProductionFacility : cult_result
FoodFoodProductionFacility : cult_result_org
FoodFoodProductionFacility : cult_target
FoodFoodProductionFacility : dietary_claim_use
FoodFoodProductionFacility : enrichment_protocol
FoodFoodProductionFacility : env_broad_scale
FoodFoodProductionFacility : env_local_scale
FoodFoodProductionFacility : env_medium
FoodFoodProductionFacility : env_monitoring_zone
FoodFoodProductionFacility : experimental_factor
FoodFoodProductionFacility : facility_type
FoodFoodProductionFacility : food_additive
FoodFoodProductionFacility : food_allergen_label
FoodFoodProductionFacility : food_contact_surf
FoodFoodProductionFacility : food_contain_wrap
FoodFoodProductionFacility : food_cooking_proc
FoodFoodProductionFacility : food_dis_point
FoodFoodProductionFacility : food_dis_point_city
FoodFoodProductionFacility : food_ingredient
FoodFoodProductionFacility : food_name_status
FoodFoodProductionFacility : food_origin
FoodFoodProductionFacility : food_pack_capacity
FoodFoodProductionFacility : food_pack_integrity
FoodFoodProductionFacility : food_pack_medium
FoodFoodProductionFacility : food_preserv_proc
FoodFoodProductionFacility : food_prior_contact
FoodFoodProductionFacility : food_prod
FoodFoodProductionFacility : food_prod_char
FoodFoodProductionFacility : food_prod_synonym
FoodFoodProductionFacility : food_product_qual
FoodFoodProductionFacility : food_product_type
FoodFoodProductionFacility : food_quality_date
FoodFoodProductionFacility : food_source
FoodFoodProductionFacility : food_trace_list
FoodFoodProductionFacility : food_trav_mode
FoodFoodProductionFacility : food_trav_vehic
FoodFoodProductionFacility : food_treat_proc
FoodFoodProductionFacility : freq_clean
FoodFoodProductionFacility : genetic_mod
FoodFoodProductionFacility : geo_loc_name
FoodFoodProductionFacility : HACCP_term
FoodFoodProductionFacility : hygienic_area
FoodFoodProductionFacility : IFSAC_category
FoodFoodProductionFacility : indoor_surf
FoodFoodProductionFacility : intended_consumer
FoodFoodProductionFacility : lat_lon
FoodFoodProductionFacility : library_prep_kit
FoodFoodProductionFacility : lot_number
FoodFoodProductionFacility : microb_cult_med
FoodFoodProductionFacility : misc_param
FoodFoodProductionFacility : nucl_acid_ext
FoodFoodProductionFacility : nucl_acid_ext_kit
FoodFoodProductionFacility : num_samp_collect
FoodFoodProductionFacility : organism_count
FoodFoodProductionFacility : part_plant_animal
FoodFoodProductionFacility : pool_dna_extracts
FoodFoodProductionFacility : project_name
FoodFoodProductionFacility : repository_name
FoodFoodProductionFacility : room_dim
FoodFoodProductionFacility : samp_floor
FoodFoodProductionFacility : samp_loc_condition
FoodFoodProductionFacility : samp_pooling
FoodFoodProductionFacility : samp_purpose
FoodFoodProductionFacility : samp_rep_biol
FoodFoodProductionFacility : samp_rep_tech
FoodFoodProductionFacility : samp_room_id
FoodFoodProductionFacility : samp_size
FoodFoodProductionFacility : samp_source_mat_cat
FoodFoodProductionFacility : samp_stor_device
FoodFoodProductionFacility : samp_stor_media
FoodFoodProductionFacility : samp_store_dur
FoodFoodProductionFacility : samp_store_loc
FoodFoodProductionFacility : samp_store_temp
FoodFoodProductionFacility : samp_surf_moisture
FoodFoodProductionFacility : samp_transport_cont
FoodFoodProductionFacility : samp_transport_dur
FoodFoodProductionFacility : samp_transport_temp
FoodFoodProductionFacility : samp_type
FoodFoodProductionFacility : samp_vol_we_dna_ext
FoodFoodProductionFacility : seq_meth
FoodFoodProductionFacility : sequencing_kit
FoodFoodProductionFacility : sequencing_location
FoodFoodProductionFacility : spec_intended_cons
FoodFoodProductionFacility : ster_meth_samp_room
FoodFoodProductionFacility : study_design
FoodFoodProductionFacility : study_inc_dur
FoodFoodProductionFacility : study_inc_temp
FoodFoodProductionFacility : study_timecourse
FoodFoodProductionFacility : study_tmnt
FoodFoodProductionFacility : subspecf_gen_lin
FoodFoodProductionFacility : surf_material
FoodFoodProductionFacility : timepoint
Inheritance
- EnvironmentalPackage
- FoodFoodProductionFacility
Slots
Name | Cardinality and Range | Description | Inheritance |
---|---|---|---|
air_temp | 0..1 String |
placeholder description; linter will ignore this | direct |
area_samp_size | 0..1 String |
placeholder description; linter will ignore this | direct |
avg_occup | 0..1 Float |
placeholder description; linter will ignore this | direct |
bacterial_density | 0..1 String |
placeholder description; linter will ignore this | direct |
biocide_used | 0..1 String |
placeholder description; linter will ignore this | direct |
cult_isol_date | 0..1 String |
placeholder description; linter will ignore this | direct |
cult_result | 0..1 String |
placeholder description; linter will ignore this | direct |
cult_result_org | 0..1 String |
placeholder description; linter will ignore this | direct |
cult_target | 0..1 String |
placeholder description; linter will ignore this | direct |
dietary_claim_use | 0..1 String |
placeholder description; linter will ignore this | direct |
enrichment_protocol | 0..1 String |
placeholder description; linter will ignore this | direct |
env_monitoring_zone | 0..1 String |
placeholder description; linter will ignore this | direct |
experimental_factor | 0..1 String |
placeholder description; linter will ignore this | direct |
facility_type | 0..1 String |
placeholder description; linter will ignore this | direct |
food_additive | 0..1 String |
placeholder description; linter will ignore this | direct |
food_allergen_label | 0..1 String |
placeholder description; linter will ignore this | direct |
food_contain_wrap | 0..1 String |
placeholder description; linter will ignore this | direct |
food_cooking_proc | 0..1 String |
placeholder description; linter will ignore this | direct |
food_dis_point | 0..1 String |
placeholder description; linter will ignore this | direct |
food_dis_point_city | 0..1 String |
placeholder description; linter will ignore this | direct |
food_ingredient | 0..1 String |
placeholder description; linter will ignore this | direct |
food_name_status | 0..1 String |
placeholder description; linter will ignore this | direct |
food_origin | 0..1 String |
placeholder description; linter will ignore this | direct |
food_pack_capacity | 0..1 String |
placeholder description; linter will ignore this | direct |
food_pack_integrity | 0..1 String |
placeholder description; linter will ignore this | direct |
food_pack_medium | 0..1 String |
placeholder description; linter will ignore this | direct |
food_preserv_proc | 0..1 String |
placeholder description; linter will ignore this | direct |
food_prior_contact | 0..1 String |
placeholder description; linter will ignore this | direct |
food_prod | 0..1 String |
placeholder description; linter will ignore this | direct |
food_prod_char | 0..1 String |
placeholder description; linter will ignore this | direct |
food_prod_synonym | 0..1 String |
placeholder description; linter will ignore this | direct |
food_quality_date | 0..1 String |
placeholder description; linter will ignore this | direct |
food_source | 0..1 String |
placeholder description; linter will ignore this | direct |
food_trace_list | 0..1 String |
placeholder description; linter will ignore this | direct |
food_trav_mode | 0..1 String |
placeholder description; linter will ignore this | direct |
food_trav_vehic | 0..1 String |
placeholder description; linter will ignore this | direct |
food_treat_proc | 0..1 String |
placeholder description; linter will ignore this | direct |
freq_clean | 0..1 String |
placeholder description; linter will ignore this | direct |
genetic_mod | 0..1 String |
placeholder description; linter will ignore this | direct |
HACCP_term | 0..1 String |
placeholder description; linter will ignore this | direct |
hygienic_area | 0..1 String |
placeholder description; linter will ignore this | direct |
indoor_surf | 0..1 String |
placeholder description; linter will ignore this | direct |
intended_consumer | 0..1 String |
placeholder description; linter will ignore this | direct |
library_prep_kit | 0..1 String |
placeholder description; linter will ignore this | direct |
lot_number | 0..1 String |
placeholder description; linter will ignore this | direct |
microb_cult_med | 0..1 String |
placeholder description; linter will ignore this | direct |
misc_param | 0..1 String |
placeholder description; linter will ignore this | direct |
nucl_acid_ext | 0..1 String |
placeholder description; linter will ignore this | direct |
nucl_acid_ext_kit | 0..1 String |
placeholder description; linter will ignore this | direct |
num_samp_collect | 0..1 String |
placeholder description; linter will ignore this | direct |
organism_count | 0..1 String |
placeholder description; linter will ignore this | direct |
part_plant_animal | 0..1 String |
placeholder description; linter will ignore this | direct |
pool_dna_extracts | 0..1 String |
placeholder description; linter will ignore this | direct |
repository_name | 0..1 String |
placeholder description; linter will ignore this | direct |
room_dim | 0..1 String |
placeholder description; linter will ignore this | direct |
samp_floor | 0..1 String |
placeholder description; linter will ignore this | direct |
samp_loc_condition | 0..1 String |
placeholder description; linter will ignore this | direct |
samp_pooling | 0..1 String |
placeholder description; linter will ignore this | direct |
samp_purpose | 0..1 String |
placeholder description; linter will ignore this | direct |
samp_rep_biol | 0..1 String |
placeholder description; linter will ignore this | direct |
samp_rep_tech | 0..1 String |
placeholder description; linter will ignore this | direct |
samp_room_id | 0..1 Integer |
placeholder description; linter will ignore this | direct |
samp_size | 0..1 String |
placeholder description; linter will ignore this | direct |
samp_store_dur | 0..1 String |
placeholder description; linter will ignore this | direct |
samp_store_loc | 0..1 String |
placeholder description; linter will ignore this | direct |
samp_store_temp | 0..1 String |
placeholder description; linter will ignore this | direct |
samp_surf_moisture | 0..1 String |
placeholder description; linter will ignore this | direct |
samp_transport_cont | 0..1 String |
placeholder description; linter will ignore this | direct |
samp_transport_dur | 0..1 String |
placeholder description; linter will ignore this | direct |
samp_transport_temp | 0..1 String |
placeholder description; linter will ignore this | direct |
samp_vol_we_dna_ext | 0..1 String |
placeholder description; linter will ignore this | direct |
sequencing_kit | 0..1 String |
placeholder description; linter will ignore this | direct |
sequencing_location | 0..1 String |
placeholder description; linter will ignore this | direct |
spec_intended_cons | 0..1 String |
placeholder description; linter will ignore this | direct |
ster_meth_samp_room | 0..1 String |
placeholder description; linter will ignore this | direct |
study_design | 0..1 String |
placeholder description; linter will ignore this | direct |
study_inc_dur | 0..1 String |
placeholder description; linter will ignore this | direct |
study_inc_temp | 0..1 String |
placeholder description; linter will ignore this | direct |
study_timecourse | 0..1 String |
placeholder description; linter will ignore this | direct |
study_tmnt | 0..1 String |
placeholder description; linter will ignore this | direct |
surf_material | 0..1 String |
placeholder description; linter will ignore this | direct |
timepoint | 0..1 String |
placeholder description; linter will ignore this | direct |
coll_site_geo_feat | 1..1 String |
placeholder description; linter will ignore this | direct |
collection_date | 1..1 String |
placeholder description; linter will ignore this | direct |
env_broad_scale | 1..1 String |
placeholder description; linter will ignore this | direct |
env_local_scale | 1..1 String |
placeholder description; linter will ignore this | direct |
env_medium | 1..1 String |
placeholder description; linter will ignore this | direct |
food_contact_surf | 1..1 String |
placeholder description; linter will ignore this | direct |
food_product_qual | 1..1 String |
placeholder description; linter will ignore this | direct |
food_product_type | 1..1 String |
placeholder description; linter will ignore this | direct |
geo_loc_name | 1..1 String |
placeholder description; linter will ignore this | direct |
IFSAC_category | 1..1 String |
placeholder description; linter will ignore this | direct |
lat_lon | 1..1 String |
placeholder description; linter will ignore this | direct |
project_name | 1..1 String |
placeholder description; linter will ignore this | direct |
samp_source_mat_cat | 1..1 String |
placeholder description; linter will ignore this | direct |
samp_stor_device | 1..1 String |
placeholder description; linter will ignore this | direct |
samp_stor_media | 1..1 String |
placeholder description; linter will ignore this | direct |
samp_type | 1..1 String |
placeholder description; linter will ignore this | direct |
seq_meth | 1..1 String |
placeholder description; linter will ignore this | direct |
subspecf_gen_lin | 0..1 String |
placeholder description; linter will ignore this | direct |
Identifier and Mapping Information
Schema Source
- from schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
Mappings
Mapping Type | Mapped Value |
---|---|
self | MIXS:0016021 |
native | MIXS:FoodFoodProductionFacility |
LinkML Source
Direct
name: FoodFoodProductionFacility
description: placeholder description; linter will ignore this
title: food-food production facility
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
is_a: EnvironmentalPackage
slots:
- air_temp
- area_samp_size
- avg_occup
- bacterial_density
- biocide_used
- cult_isol_date
- cult_result
- cult_result_org
- cult_target
- dietary_claim_use
- enrichment_protocol
- env_monitoring_zone
- experimental_factor
- facility_type
- food_additive
- food_allergen_label
- food_contain_wrap
- food_cooking_proc
- food_dis_point
- food_dis_point_city
- food_ingredient
- food_name_status
- food_origin
- food_pack_capacity
- food_pack_integrity
- food_pack_medium
- food_preserv_proc
- food_prior_contact
- food_prod
- food_prod_char
- food_prod_synonym
- food_quality_date
- food_source
- food_trace_list
- food_trav_mode
- food_trav_vehic
- food_treat_proc
- freq_clean
- genetic_mod
- HACCP_term
- hygienic_area
- indoor_surf
- intended_consumer
- library_prep_kit
- lot_number
- microb_cult_med
- misc_param
- nucl_acid_ext
- nucl_acid_ext_kit
- num_samp_collect
- organism_count
- part_plant_animal
- pool_dna_extracts
- repository_name
- room_dim
- samp_floor
- samp_loc_condition
- samp_pooling
- samp_purpose
- samp_rep_biol
- samp_rep_tech
- samp_room_id
- samp_size
- samp_store_dur
- samp_store_loc
- samp_store_temp
- samp_surf_moisture
- samp_transport_cont
- samp_transport_dur
- samp_transport_temp
- samp_vol_we_dna_ext
- sequencing_kit
- sequencing_location
- spec_intended_cons
- ster_meth_samp_room
- study_design
- study_inc_dur
- study_inc_temp
- study_timecourse
- study_tmnt
- surf_material
- timepoint
- coll_site_geo_feat
- collection_date
- env_broad_scale
- env_local_scale
- env_medium
- food_contact_surf
- food_product_qual
- food_product_type
- geo_loc_name
- IFSAC_category
- lat_lon
- project_name
- samp_source_mat_cat
- samp_stor_device
- samp_stor_media
- samp_type
- seq_meth
- subspecf_gen_lin
slot_usage:
HACCP_term:
name: HACCP_term
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
- FoodHumanFoods
IFSAC_category:
name: IFSAC_category
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
required: true
air_temp:
name: air_temp
domain_of:
- BuiltEnvironment
- FoodFoodProductionFacility
area_samp_size:
name: area_samp_size
domain_of:
- FoodFoodProductionFacility
avg_occup:
name: avg_occup
domain_of:
- BuiltEnvironment
- FoodFoodProductionFacility
bacterial_density:
name: bacterial_density
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
- FoodHumanFoods
biocide_used:
name: biocide_used
domain_of:
- FoodFoodProductionFacility
coll_site_geo_feat:
name: coll_site_geo_feat
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
- FoodHumanFoods
required: true
collection_date:
name: collection_date
domain_of:
- Checklist
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- Miuvig
- SymbiontAssociated
required: true
cult_isol_date:
name: cult_isol_date
domain_of:
- Agriculture
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
cult_result:
name: cult_result
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
cult_result_org:
name: cult_result_org
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
cult_target:
name: cult_target
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
dietary_claim_use:
name: dietary_claim_use
domain_of:
- FoodFoodProductionFacility
- FoodHumanFoods
enrichment_protocol:
name: enrichment_protocol
domain_of:
- Agriculture
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
env_broad_scale:
name: env_broad_scale
domain_of:
- Checklist
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- Miuvig
- SymbiontAssociated
required: true
env_local_scale:
name: env_local_scale
domain_of:
- Checklist
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- Miuvig
- SymbiontAssociated
required: true
env_medium:
name: env_medium
domain_of:
- Checklist
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- Miuvig
- SymbiontAssociated
required: true
env_monitoring_zone:
name: env_monitoring_zone
domain_of:
- FoodFoodProductionFacility
experimental_factor:
name: experimental_factor
domain_of:
- Checklist
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
- FoodHumanFoods
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- Miuvig
facility_type:
name: facility_type
domain_of:
- FoodFoodProductionFacility
food_additive:
name: food_additive
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
- FoodHumanFoods
food_allergen_label:
name: food_allergen_label
domain_of:
- FoodFoodProductionFacility
- FoodHumanFoods
food_contact_surf:
name: food_contact_surf
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
required: true
food_contain_wrap:
name: food_contain_wrap
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
food_cooking_proc:
name: food_cooking_proc
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
- FoodHumanFoods
food_dis_point:
name: food_dis_point
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
- FoodHumanFoods
food_dis_point_city:
name: food_dis_point_city
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
food_ingredient:
name: food_ingredient
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
- FoodHumanFoods
food_name_status:
name: food_name_status
domain_of:
- FoodFoodProductionFacility
- FoodHumanFoods
food_origin:
name: food_origin
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
- FoodHumanFoods
food_pack_capacity:
name: food_pack_capacity
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
- FoodHumanFoods
food_pack_integrity:
name: food_pack_integrity
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
- FoodHumanFoods
food_pack_medium:
name: food_pack_medium
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
food_preserv_proc:
name: food_preserv_proc
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
food_prior_contact:
name: food_prior_contact
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
- FoodHumanFoods
food_prod:
name: food_prod
domain_of:
- Agriculture
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
- FoodHumanFoods
food_prod_char:
name: food_prod_char
domain_of:
- FoodFarmEnvironment
- FoodFoodProductionFacility
food_prod_synonym:
name: food_prod_synonym
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
- FoodHumanFoods
food_product_qual:
name: food_product_qual
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
- FoodHumanFoods
required: true
food_product_type:
name: food_product_type
domain_of:
- Agriculture
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
required: true
food_quality_date:
name: food_quality_date
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
food_source:
name: food_source
domain_of:
- Agriculture
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
food_trace_list:
name: food_trace_list
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
- FoodHumanFoods
food_trav_mode:
name: food_trav_mode
domain_of:
- Agriculture
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
food_trav_vehic:
name: food_trav_vehic
domain_of:
- Agriculture
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
food_treat_proc:
name: food_treat_proc
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
freq_clean:
name: freq_clean
domain_of:
- BuiltEnvironment
- FoodFoodProductionFacility
genetic_mod:
name: genetic_mod
domain_of:
- Agriculture
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
- HostAssociated
- PlantAssociated
geo_loc_name:
name: geo_loc_name
domain_of:
- Checklist
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- Miuvig
- SymbiontAssociated
required: true
hygienic_area:
name: hygienic_area
domain_of:
- FoodFoodProductionFacility
indoor_surf:
name: indoor_surf
domain_of:
- BuiltEnvironment
- FoodFoodProductionFacility
intended_consumer:
name: intended_consumer
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
lat_lon:
name: lat_lon
domain_of:
- Checklist
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- Miuvig
- SymbiontAssociated
required: true
library_prep_kit:
name: library_prep_kit
domain_of:
- Agriculture
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
lot_number:
name: lot_number
domain_of:
- Agriculture
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
microb_cult_med:
name: microb_cult_med
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
- FoodHumanFoods
misc_param:
name: misc_param
domain_of:
- Agriculture
- Air
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
- HostAssociated
- HumanAssociated
- HumanGut
- HumanOral
- HumanSkin
- HumanVaginal
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- PlantAssociated
- Sediment
- Soil
- SymbiontAssociated
- WastewaterSludge
- Water
nucl_acid_ext:
name: nucl_acid_ext
domain_of:
- Agriculture
- Checklist
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- Miuvig
nucl_acid_ext_kit:
name: nucl_acid_ext_kit
domain_of:
- FoodFoodProductionFacility
- FoodHumanFoods
num_samp_collect:
name: num_samp_collect
domain_of:
- FoodFoodProductionFacility
- FoodHumanFoods
organism_count:
name: organism_count
domain_of:
- Agriculture
- Air
- BuiltEnvironment
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
- HostAssociated
- HumanAssociated
- HumanGut
- HumanOral
- HumanSkin
- HumanVaginal
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- PlantAssociated
- Sediment
- SymbiontAssociated
- WastewaterSludge
- Water
part_plant_animal:
name: part_plant_animal
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
pool_dna_extracts:
name: pool_dna_extracts
domain_of:
- Agriculture
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
- FoodHumanFoods
- Soil
project_name:
name: project_name
domain_of:
- Air
- BuiltEnvironment
- Checklist
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
- HostAssociated
- HumanAssociated
- HumanGut
- HumanOral
- HumanSkin
- HumanVaginal
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- MicrobialMatBiofilm
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- MiscellaneousNaturalOrArtificialEnvironment
- Miuvig
- PlantAssociated
- Sediment
- Soil
- SymbiontAssociated
- WastewaterSludge
- Water
required: true
repository_name:
name: repository_name
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
room_dim:
name: room_dim
domain_of:
- BuiltEnvironment
- FoodFoodProductionFacility
samp_floor:
name: samp_floor
domain_of:
- BuiltEnvironment
- FoodFoodProductionFacility
samp_loc_condition:
name: samp_loc_condition
domain_of:
- FoodFoodProductionFacility
samp_pooling:
name: samp_pooling
domain_of:
- Agriculture
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
samp_purpose:
name: samp_purpose
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
samp_rep_biol:
name: samp_rep_biol
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
- FoodHumanFoods
samp_rep_tech:
name: samp_rep_tech
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
- FoodHumanFoods
samp_room_id:
name: samp_room_id
domain_of:
- BuiltEnvironment
- FoodFoodProductionFacility
samp_size:
name: samp_size
domain_of:
- Agriculture
- Checklist
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- Miuvig
samp_source_mat_cat:
name: samp_source_mat_cat
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
required: true
samp_stor_device:
name: samp_stor_device
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
- FoodHumanFoods
required: true
samp_stor_media:
name: samp_stor_media
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
- FoodHumanFoods
required: true
samp_store_dur:
name: samp_store_dur
domain_of:
- Agriculture
- Air
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
- HostAssociated
- HumanAssociated
- HumanGut
- HumanOral
- HumanSkin
- HumanVaginal
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- PlantAssociated
- Sediment
- SymbiontAssociated
- WastewaterSludge
- Water
samp_store_loc:
name: samp_store_loc
domain_of:
- Agriculture
- Air
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
- FoodHumanFoods
- HostAssociated
- HumanAssociated
- HumanGut
- HumanOral
- HumanSkin
- HumanVaginal
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- PlantAssociated
- Sediment
- SymbiontAssociated
- WastewaterSludge
- Water
samp_store_temp:
name: samp_store_temp
domain_of:
- Agriculture
- Air
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
- HostAssociated
- HumanAssociated
- HumanGut
- HumanOral
- HumanSkin
- HumanVaginal
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- PlantAssociated
- Sediment
- SymbiontAssociated
- WastewaterSludge
- Water
samp_surf_moisture:
name: samp_surf_moisture
domain_of:
- FoodFoodProductionFacility
samp_transport_cont:
name: samp_transport_cont
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
- FoodHumanFoods
samp_transport_dur:
name: samp_transport_dur
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
- FoodHumanFoods
samp_transport_temp:
name: samp_transport_temp
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
- FoodHumanFoods
samp_type:
name: samp_type
domain_of:
- FoodFarmEnvironment
- FoodFoodProductionFacility
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
required: true
samp_vol_we_dna_ext:
name: samp_vol_we_dna_ext
domain_of:
- Agriculture
- Air
- Checklist
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
- HostAssociated
- HumanAssociated
- HumanGut
- HumanOral
- HumanSkin
- HumanVaginal
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- MicrobialMatBiofilm
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- MiscellaneousNaturalOrArtificialEnvironment
- Miuvig
- PlantAssociated
- Sediment
- Soil
- SymbiontAssociated
- WastewaterSludge
- Water
seq_meth:
name: seq_meth
domain_of:
- Agriculture
- Checklist
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- Miuvig
required: true
sequencing_kit:
name: sequencing_kit
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
sequencing_location:
name: sequencing_location
domain_of:
- Agriculture
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
spec_intended_cons:
name: spec_intended_cons
domain_of:
- FoodFoodProductionFacility
ster_meth_samp_room:
name: ster_meth_samp_room
domain_of:
- FoodFoodProductionFacility
study_design:
name: study_design
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
- FoodHumanFoods
study_inc_dur:
name: study_inc_dur
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
- FoodHumanFoods
study_inc_temp:
name: study_inc_temp
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
- FoodHumanFoods
study_timecourse:
name: study_timecourse
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
- FoodHumanFoods
study_tmnt:
name: study_tmnt
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
- FoodHumanFoods
subspecf_gen_lin:
name: subspecf_gen_lin
domain_of:
- Checklist
- FoodFoodProductionFacility
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- MimarksC
surf_material:
name: surf_material
domain_of:
- BuiltEnvironment
- FoodFoodProductionFacility
timepoint:
name: timepoint
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
class_uri: MIXS:0016021
Induced
name: FoodFoodProductionFacility
description: placeholder description; linter will ignore this
title: food-food production facility
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
is_a: EnvironmentalPackage
slot_usage:
HACCP_term:
name: HACCP_term
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
- FoodHumanFoods
IFSAC_category:
name: IFSAC_category
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
required: true
air_temp:
name: air_temp
domain_of:
- BuiltEnvironment
- FoodFoodProductionFacility
area_samp_size:
name: area_samp_size
domain_of:
- FoodFoodProductionFacility
avg_occup:
name: avg_occup
domain_of:
- BuiltEnvironment
- FoodFoodProductionFacility
bacterial_density:
name: bacterial_density
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
- FoodHumanFoods
biocide_used:
name: biocide_used
domain_of:
- FoodFoodProductionFacility
coll_site_geo_feat:
name: coll_site_geo_feat
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
- FoodHumanFoods
required: true
collection_date:
name: collection_date
domain_of:
- Checklist
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- Miuvig
- SymbiontAssociated
required: true
cult_isol_date:
name: cult_isol_date
domain_of:
- Agriculture
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
cult_result:
name: cult_result
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
cult_result_org:
name: cult_result_org
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
cult_target:
name: cult_target
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
dietary_claim_use:
name: dietary_claim_use
domain_of:
- FoodFoodProductionFacility
- FoodHumanFoods
enrichment_protocol:
name: enrichment_protocol
domain_of:
- Agriculture
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
env_broad_scale:
name: env_broad_scale
domain_of:
- Checklist
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- Miuvig
- SymbiontAssociated
required: true
env_local_scale:
name: env_local_scale
domain_of:
- Checklist
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- Miuvig
- SymbiontAssociated
required: true
env_medium:
name: env_medium
domain_of:
- Checklist
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- Miuvig
- SymbiontAssociated
required: true
env_monitoring_zone:
name: env_monitoring_zone
domain_of:
- FoodFoodProductionFacility
experimental_factor:
name: experimental_factor
domain_of:
- Checklist
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
- FoodHumanFoods
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- Miuvig
facility_type:
name: facility_type
domain_of:
- FoodFoodProductionFacility
food_additive:
name: food_additive
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
- FoodHumanFoods
food_allergen_label:
name: food_allergen_label
domain_of:
- FoodFoodProductionFacility
- FoodHumanFoods
food_contact_surf:
name: food_contact_surf
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
required: true
food_contain_wrap:
name: food_contain_wrap
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
food_cooking_proc:
name: food_cooking_proc
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
- FoodHumanFoods
food_dis_point:
name: food_dis_point
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
- FoodHumanFoods
food_dis_point_city:
name: food_dis_point_city
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
food_ingredient:
name: food_ingredient
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
- FoodHumanFoods
food_name_status:
name: food_name_status
domain_of:
- FoodFoodProductionFacility
- FoodHumanFoods
food_origin:
name: food_origin
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
- FoodHumanFoods
food_pack_capacity:
name: food_pack_capacity
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
- FoodHumanFoods
food_pack_integrity:
name: food_pack_integrity
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
- FoodHumanFoods
food_pack_medium:
name: food_pack_medium
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
food_preserv_proc:
name: food_preserv_proc
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
food_prior_contact:
name: food_prior_contact
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
- FoodHumanFoods
food_prod:
name: food_prod
domain_of:
- Agriculture
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
- FoodHumanFoods
food_prod_char:
name: food_prod_char
domain_of:
- FoodFarmEnvironment
- FoodFoodProductionFacility
food_prod_synonym:
name: food_prod_synonym
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
- FoodHumanFoods
food_product_qual:
name: food_product_qual
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
- FoodHumanFoods
required: true
food_product_type:
name: food_product_type
domain_of:
- Agriculture
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
required: true
food_quality_date:
name: food_quality_date
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
food_source:
name: food_source
domain_of:
- Agriculture
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
food_trace_list:
name: food_trace_list
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
- FoodHumanFoods
food_trav_mode:
name: food_trav_mode
domain_of:
- Agriculture
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
food_trav_vehic:
name: food_trav_vehic
domain_of:
- Agriculture
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
food_treat_proc:
name: food_treat_proc
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
freq_clean:
name: freq_clean
domain_of:
- BuiltEnvironment
- FoodFoodProductionFacility
genetic_mod:
name: genetic_mod
domain_of:
- Agriculture
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
- HostAssociated
- PlantAssociated
geo_loc_name:
name: geo_loc_name
domain_of:
- Checklist
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- Miuvig
- SymbiontAssociated
required: true
hygienic_area:
name: hygienic_area
domain_of:
- FoodFoodProductionFacility
indoor_surf:
name: indoor_surf
domain_of:
- BuiltEnvironment
- FoodFoodProductionFacility
intended_consumer:
name: intended_consumer
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
lat_lon:
name: lat_lon
domain_of:
- Checklist
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- Miuvig
- SymbiontAssociated
required: true
library_prep_kit:
name: library_prep_kit
domain_of:
- Agriculture
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
lot_number:
name: lot_number
domain_of:
- Agriculture
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
microb_cult_med:
name: microb_cult_med
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
- FoodHumanFoods
misc_param:
name: misc_param
domain_of:
- Agriculture
- Air
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
- HostAssociated
- HumanAssociated
- HumanGut
- HumanOral
- HumanSkin
- HumanVaginal
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- PlantAssociated
- Sediment
- Soil
- SymbiontAssociated
- WastewaterSludge
- Water
nucl_acid_ext:
name: nucl_acid_ext
domain_of:
- Agriculture
- Checklist
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- Miuvig
nucl_acid_ext_kit:
name: nucl_acid_ext_kit
domain_of:
- FoodFoodProductionFacility
- FoodHumanFoods
num_samp_collect:
name: num_samp_collect
domain_of:
- FoodFoodProductionFacility
- FoodHumanFoods
organism_count:
name: organism_count
domain_of:
- Agriculture
- Air
- BuiltEnvironment
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
- HostAssociated
- HumanAssociated
- HumanGut
- HumanOral
- HumanSkin
- HumanVaginal
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- PlantAssociated
- Sediment
- SymbiontAssociated
- WastewaterSludge
- Water
part_plant_animal:
name: part_plant_animal
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
pool_dna_extracts:
name: pool_dna_extracts
domain_of:
- Agriculture
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
- FoodHumanFoods
- Soil
project_name:
name: project_name
domain_of:
- Air
- BuiltEnvironment
- Checklist
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
- HostAssociated
- HumanAssociated
- HumanGut
- HumanOral
- HumanSkin
- HumanVaginal
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- MicrobialMatBiofilm
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- MiscellaneousNaturalOrArtificialEnvironment
- Miuvig
- PlantAssociated
- Sediment
- Soil
- SymbiontAssociated
- WastewaterSludge
- Water
required: true
repository_name:
name: repository_name
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
room_dim:
name: room_dim
domain_of:
- BuiltEnvironment
- FoodFoodProductionFacility
samp_floor:
name: samp_floor
domain_of:
- BuiltEnvironment
- FoodFoodProductionFacility
samp_loc_condition:
name: samp_loc_condition
domain_of:
- FoodFoodProductionFacility
samp_pooling:
name: samp_pooling
domain_of:
- Agriculture
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
samp_purpose:
name: samp_purpose
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
samp_rep_biol:
name: samp_rep_biol
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
- FoodHumanFoods
samp_rep_tech:
name: samp_rep_tech
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
- FoodHumanFoods
samp_room_id:
name: samp_room_id
domain_of:
- BuiltEnvironment
- FoodFoodProductionFacility
samp_size:
name: samp_size
domain_of:
- Agriculture
- Checklist
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- Miuvig
samp_source_mat_cat:
name: samp_source_mat_cat
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
required: true
samp_stor_device:
name: samp_stor_device
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
- FoodHumanFoods
required: true
samp_stor_media:
name: samp_stor_media
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
- FoodHumanFoods
required: true
samp_store_dur:
name: samp_store_dur
domain_of:
- Agriculture
- Air
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
- HostAssociated
- HumanAssociated
- HumanGut
- HumanOral
- HumanSkin
- HumanVaginal
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- PlantAssociated
- Sediment
- SymbiontAssociated
- WastewaterSludge
- Water
samp_store_loc:
name: samp_store_loc
domain_of:
- Agriculture
- Air
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
- FoodHumanFoods
- HostAssociated
- HumanAssociated
- HumanGut
- HumanOral
- HumanSkin
- HumanVaginal
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- PlantAssociated
- Sediment
- SymbiontAssociated
- WastewaterSludge
- Water
samp_store_temp:
name: samp_store_temp
domain_of:
- Agriculture
- Air
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
- HostAssociated
- HumanAssociated
- HumanGut
- HumanOral
- HumanSkin
- HumanVaginal
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- PlantAssociated
- Sediment
- SymbiontAssociated
- WastewaterSludge
- Water
samp_surf_moisture:
name: samp_surf_moisture
domain_of:
- FoodFoodProductionFacility
samp_transport_cont:
name: samp_transport_cont
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
- FoodHumanFoods
samp_transport_dur:
name: samp_transport_dur
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
- FoodHumanFoods
samp_transport_temp:
name: samp_transport_temp
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
- FoodHumanFoods
samp_type:
name: samp_type
domain_of:
- FoodFarmEnvironment
- FoodFoodProductionFacility
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
required: true
samp_vol_we_dna_ext:
name: samp_vol_we_dna_ext
domain_of:
- Agriculture
- Air
- Checklist
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
- HostAssociated
- HumanAssociated
- HumanGut
- HumanOral
- HumanSkin
- HumanVaginal
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- MicrobialMatBiofilm
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- MiscellaneousNaturalOrArtificialEnvironment
- Miuvig
- PlantAssociated
- Sediment
- Soil
- SymbiontAssociated
- WastewaterSludge
- Water
seq_meth:
name: seq_meth
domain_of:
- Agriculture
- Checklist
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- Miuvig
required: true
sequencing_kit:
name: sequencing_kit
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
sequencing_location:
name: sequencing_location
domain_of:
- Agriculture
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
spec_intended_cons:
name: spec_intended_cons
domain_of:
- FoodFoodProductionFacility
ster_meth_samp_room:
name: ster_meth_samp_room
domain_of:
- FoodFoodProductionFacility
study_design:
name: study_design
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
- FoodHumanFoods
study_inc_dur:
name: study_inc_dur
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
- FoodHumanFoods
study_inc_temp:
name: study_inc_temp
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
- FoodHumanFoods
study_timecourse:
name: study_timecourse
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
- FoodHumanFoods
study_tmnt:
name: study_tmnt
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
- FoodHumanFoods
subspecf_gen_lin:
name: subspecf_gen_lin
domain_of:
- Checklist
- FoodFoodProductionFacility
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- MimarksC
surf_material:
name: surf_material
domain_of:
- BuiltEnvironment
- FoodFoodProductionFacility
timepoint:
name: timepoint
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
attributes:
air_temp:
name: air_temp
description: placeholder description; linter will ignore this
title: air temperature
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000124
alias: air_temp
owner: FoodFoodProductionFacility
domain_of:
- BuiltEnvironment
- FoodFoodProductionFacility
range: string
pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
structured_pattern:
syntax: '{float} {unit}'
area_samp_size:
name: area_samp_size
description: placeholder description; linter will ignore this
title: area sampled size
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0001255
alias: area_samp_size
owner: FoodFoodProductionFacility
domain_of:
- FoodFoodProductionFacility
range: string
avg_occup:
name: avg_occup
description: placeholder description; linter will ignore this
title: average daily occupancy
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000775
alias: avg_occup
owner: FoodFoodProductionFacility
domain_of:
- BuiltEnvironment
- FoodFoodProductionFacility
range: float
bacterial_density:
name: bacterial_density
description: placeholder description; linter will ignore this
title: bacteria density
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0001194
alias: bacterial_density
owner: FoodFoodProductionFacility
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
- FoodHumanFoods
range: string
pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
structured_pattern:
syntax: '{float} {unit}'
biocide_used:
name: biocide_used
description: placeholder description; linter will ignore this
title: biocide
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0001258
alias: biocide_used
owner: FoodFoodProductionFacility
domain_of:
- FoodFoodProductionFacility
range: string
pattern: '[^s\|][^\r\n\t\|]*'
structured_pattern:
syntax: '{free_text}'
cult_isol_date:
name: cult_isol_date
description: placeholder description; linter will ignore this
title: culture isolation date
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0001181
alias: cult_isol_date
owner: FoodFoodProductionFacility
domain_of:
- Agriculture
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
range: string
cult_result:
name: cult_result
description: placeholder description; linter will ignore this
title: culture result
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0001117
alias: cult_result
owner: FoodFoodProductionFacility
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
range: string
cult_result_org:
name: cult_result_org
description: placeholder description; linter will ignore this
title: culture result organism
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0001118
alias: cult_result_org
owner: FoodFoodProductionFacility
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
range: string
cult_target:
name: cult_target
description: placeholder description; linter will ignore this
title: culture target microbial analyte
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0001119
alias: cult_target
owner: FoodFoodProductionFacility
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
range: string
dietary_claim_use:
name: dietary_claim_use
description: placeholder description; linter will ignore this
title: dietary claim or use
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0001199
alias: dietary_claim_use
owner: FoodFoodProductionFacility
domain_of:
- FoodFoodProductionFacility
- FoodHumanFoods
range: string
enrichment_protocol:
name: enrichment_protocol
description: placeholder description; linter will ignore this
title: enrichment protocol
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0001177
alias: enrichment_protocol
owner: FoodFoodProductionFacility
domain_of:
- Agriculture
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
range: string
pattern: (10.\d{4,9}/[-._;()/:a-zA-Z0-9]+)|(PMID:(\d{7,8}))|((?:https?://)?(?:www\.)?[\w-]+(?:\.[\w-]+)+[\w.,@?^=%&:/~+#-]*[\w@?^=%&/~+#-])|([^s\|][^\r\n\t\|]*)
structured_pattern:
syntax: ({DOI})|({PMID})|({URL})|({free_text})
env_monitoring_zone:
name: env_monitoring_zone
description: placeholder description; linter will ignore this
title: food production environmental monitoring zone
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0001254
alias: env_monitoring_zone
owner: FoodFoodProductionFacility
domain_of:
- FoodFoodProductionFacility
range: string
pattern: '[^s\|][^\r\n\t\|]* [[a-zA-Z]+:[0-9]+]'
structured_pattern:
syntax: '{term_label} [{term_id}]'
experimental_factor:
name: experimental_factor
description: placeholder description; linter will ignore this
title: experimental factor
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000008
alias: experimental_factor
owner: FoodFoodProductionFacility
domain_of:
- Checklist
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
- FoodHumanFoods
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- Miuvig
range: string
facility_type:
name: facility_type
description: placeholder description; linter will ignore this
title: facility type
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0001252
alias: facility_type
owner: FoodFoodProductionFacility
domain_of:
- FoodFoodProductionFacility
range: string
food_additive:
name: food_additive
description: placeholder description; linter will ignore this
title: food additive
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0001200
alias: food_additive
owner: FoodFoodProductionFacility
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
- FoodHumanFoods
range: string
food_allergen_label:
name: food_allergen_label
description: placeholder description; linter will ignore this
title: food allergen labeling
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0001201
alias: food_allergen_label
owner: FoodFoodProductionFacility
domain_of:
- FoodFoodProductionFacility
- FoodHumanFoods
range: string
food_contain_wrap:
name: food_contain_wrap
description: placeholder description; linter will ignore this
title: food container or wrapping
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0001132
alias: food_contain_wrap
owner: FoodFoodProductionFacility
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
range: string
food_cooking_proc:
name: food_cooking_proc
description: placeholder description; linter will ignore this
title: food cooking process
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0001202
alias: food_cooking_proc
owner: FoodFoodProductionFacility
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
- FoodHumanFoods
range: string
food_dis_point:
name: food_dis_point
description: placeholder description; linter will ignore this
title: food distribution point geographic location
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0001203
alias: food_dis_point
owner: FoodFoodProductionFacility
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
- FoodHumanFoods
range: string
food_dis_point_city:
name: food_dis_point_city
description: placeholder description; linter will ignore this
title: food distribution point geographic location (city)
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0001204
alias: food_dis_point_city
owner: FoodFoodProductionFacility
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
range: string
food_ingredient:
name: food_ingredient
description: placeholder description; linter will ignore this
title: food ingredient
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0001205
alias: food_ingredient
owner: FoodFoodProductionFacility
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
- FoodHumanFoods
range: string
food_name_status:
name: food_name_status
description: placeholder description; linter will ignore this
title: food product name legal status
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0001206
alias: food_name_status
owner: FoodFoodProductionFacility
domain_of:
- FoodFoodProductionFacility
- FoodHumanFoods
range: string
pattern: '[^s\|][^\r\n\t\|]* [[a-zA-Z]+:[0-9]+]'
structured_pattern:
syntax: '{term_label} [{term_id}]'
food_origin:
name: food_origin
description: placeholder description; linter will ignore this
title: food product origin geographic location
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0001207
alias: food_origin
owner: FoodFoodProductionFacility
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
- FoodHumanFoods
range: string
food_pack_capacity:
name: food_pack_capacity
description: placeholder description; linter will ignore this
title: food package capacity
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0001208
alias: food_pack_capacity
owner: FoodFoodProductionFacility
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
- FoodHumanFoods
range: string
pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
structured_pattern:
syntax: '{float} {unit}'
food_pack_integrity:
name: food_pack_integrity
description: placeholder description; linter will ignore this
title: food packing medium integrity
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0001209
alias: food_pack_integrity
owner: FoodFoodProductionFacility
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
- FoodHumanFoods
range: string
food_pack_medium:
name: food_pack_medium
description: placeholder description; linter will ignore this
title: food packing medium
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0001134
alias: food_pack_medium
owner: FoodFoodProductionFacility
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
range: string
food_preserv_proc:
name: food_preserv_proc
description: placeholder description; linter will ignore this
title: food preservation process
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0001135
alias: food_preserv_proc
owner: FoodFoodProductionFacility
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
range: string
food_prior_contact:
name: food_prior_contact
description: placeholder description; linter will ignore this
title: material of contact prior to food packaging
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0001210
alias: food_prior_contact
owner: FoodFoodProductionFacility
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
- FoodHumanFoods
range: string
food_prod:
name: food_prod
description: placeholder description; linter will ignore this
title: food production system characteristics
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0001211
alias: food_prod
owner: FoodFoodProductionFacility
domain_of:
- Agriculture
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
- FoodHumanFoods
range: string
pattern: '[^s\|][^\r\n\t\|]* [[a-zA-Z]+:[0-9]+]'
structured_pattern:
syntax: '{term_label} [{term_id}]'
food_prod_char:
name: food_prod_char
description: placeholder description; linter will ignore this
title: food production characteristics
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0001136
alias: food_prod_char
owner: FoodFoodProductionFacility
domain_of:
- FoodFarmEnvironment
- FoodFoodProductionFacility
range: string
pattern: '[^s\|][^\r\n\t\|]*'
structured_pattern:
syntax: '{free_text}'
food_prod_synonym:
name: food_prod_synonym
description: placeholder description; linter will ignore this
title: food product synonym
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0001212
alias: food_prod_synonym
owner: FoodFoodProductionFacility
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
- FoodHumanFoods
range: string
pattern: '[^s\|][^\r\n\t\|]*'
structured_pattern:
syntax: '{free_text}'
food_quality_date:
name: food_quality_date
description: placeholder description; linter will ignore this
title: food quality date
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0001178
alias: food_quality_date
owner: FoodFoodProductionFacility
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
range: string
food_source:
name: food_source
description: placeholder description; linter will ignore this
title: food source
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0001139
alias: food_source
owner: FoodFoodProductionFacility
domain_of:
- Agriculture
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
range: string
pattern: '[^s\|][^\r\n\t\|]* [[a-zA-Z]+:[0-9]+]'
structured_pattern:
syntax: '{term_label} [{term_id}]'
food_trace_list:
name: food_trace_list
description: placeholder description; linter will ignore this
title: food traceability list category
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0001214
alias: food_trace_list
owner: FoodFoodProductionFacility
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
- FoodHumanFoods
range: string
food_trav_mode:
name: food_trav_mode
description: placeholder description; linter will ignore this
title: food shipping transportation method
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0001137
alias: food_trav_mode
owner: FoodFoodProductionFacility
domain_of:
- Agriculture
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
range: string
pattern: '[^s\|][^\r\n\t\|]* [[a-zA-Z]+:[0-9]+]'
structured_pattern:
syntax: '{term_label} [{term_id}]'
food_trav_vehic:
name: food_trav_vehic
description: placeholder description; linter will ignore this
title: food shipping transportation vehicle
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0001138
alias: food_trav_vehic
owner: FoodFoodProductionFacility
domain_of:
- Agriculture
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
range: string
food_treat_proc:
name: food_treat_proc
description: placeholder description; linter will ignore this
title: food treatment process
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0001140
alias: food_treat_proc
owner: FoodFoodProductionFacility
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
range: string
freq_clean:
name: freq_clean
description: placeholder description; linter will ignore this
title: frequency of cleaning
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000226
alias: freq_clean
owner: FoodFoodProductionFacility
domain_of:
- BuiltEnvironment
- FoodFoodProductionFacility
range: string
genetic_mod:
name: genetic_mod
description: placeholder description; linter will ignore this
title: genetic modification
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000859
alias: genetic_mod
owner: FoodFoodProductionFacility
domain_of:
- Agriculture
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
- HostAssociated
- PlantAssociated
range: string
pattern: (10.\d{4,9}/[-._;()/:a-zA-Z0-9]+)|(PMID:(\d{7,8}))|((?:https?://)?(?:www\.)?[\w-]+(?:\.[\w-]+)+[\w.,@?^=%&:/~+#-]*[\w@?^=%&/~+#-])|([^s\|][^\r\n\t\|]*)
structured_pattern:
syntax: ({DOI})|({PMID})|({URL})|({free_text})
HACCP_term:
name: HACCP_term
description: placeholder description; linter will ignore this
title: Hazard Analysis Critical Control Points (HACCP) guide food safety term
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0001215
alias: HACCP_term
owner: FoodFoodProductionFacility
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
- FoodHumanFoods
range: string
pattern: '[^s\|][^\r\n\t\|]* [[a-zA-Z]+:[0-9]+]'
structured_pattern:
syntax: '{term_label} [{term_id}]'
hygienic_area:
name: hygienic_area
description: placeholder description; linter will ignore this
title: hygienic food production area
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0001253
alias: hygienic_area
owner: FoodFoodProductionFacility
domain_of:
- FoodFoodProductionFacility
range: string
pattern: '[^s\|][^\r\n\t\|]* [[a-zA-Z]+:[0-9]+]'
structured_pattern:
syntax: '{term_label} [{term_id}]'
indoor_surf:
name: indoor_surf
description: placeholder description; linter will ignore this
title: indoor surface
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000764
alias: indoor_surf
owner: FoodFoodProductionFacility
domain_of:
- BuiltEnvironment
- FoodFoodProductionFacility
range: string
intended_consumer:
name: intended_consumer
description: placeholder description; linter will ignore this
title: intended consumer
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0001144
alias: intended_consumer
owner: FoodFoodProductionFacility
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
range: string
library_prep_kit:
name: library_prep_kit
description: placeholder description; linter will ignore this
title: library preparation kit
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0001145
alias: library_prep_kit
owner: FoodFoodProductionFacility
domain_of:
- Agriculture
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
range: string
pattern: '[^s\|][^\r\n\t\|]*'
structured_pattern:
syntax: '{free_text}'
lot_number:
name: lot_number
description: placeholder description; linter will ignore this
title: lot number
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0001147
alias: lot_number
owner: FoodFoodProductionFacility
domain_of:
- Agriculture
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
range: string
microb_cult_med:
name: microb_cult_med
description: placeholder description; linter will ignore this
title: microbiological culture medium
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0001216
alias: microb_cult_med
owner: FoodFoodProductionFacility
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
- FoodHumanFoods
range: string
misc_param:
name: misc_param
description: placeholder description; linter will ignore this
title: miscellaneous parameter
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000752
alias: misc_param
owner: FoodFoodProductionFacility
domain_of:
- Agriculture
- Air
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
- HostAssociated
- HumanAssociated
- HumanGut
- HumanOral
- HumanSkin
- HumanVaginal
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- PlantAssociated
- Sediment
- Soil
- SymbiontAssociated
- WastewaterSludge
- Water
range: string
pattern: (([^s\|][^\r\n\t\|]*;[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*)\\|)*([^s\|][^\r\n\t\|]*;[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)?
[^s\|][^\r\n\t\|]*)
structured_pattern:
syntax: (({free_text};{float} {unit})\\|)*({free_text};{float} {unit})
nucl_acid_ext:
name: nucl_acid_ext
description: placeholder description; linter will ignore this
title: nucleic acid extraction
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000037
alias: nucl_acid_ext
owner: FoodFoodProductionFacility
domain_of:
- Agriculture
- Checklist
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- Miuvig
range: string
pattern: (10.\d{4,9}/[-._;()/:a-zA-Z0-9]+)|(PMID:(\d{7,8}))|((?:https?://)?(?:www\.)?[\w-]+(?:\.[\w-]+)+[\w.,@?^=%&:/~+#-]*[\w@?^=%&/~+#-])
structured_pattern:
syntax: ({DOI})|({PMID})|({URL})
nucl_acid_ext_kit:
name: nucl_acid_ext_kit
description: placeholder description; linter will ignore this
title: nucleic acid extraction kit
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0001223
alias: nucl_acid_ext_kit
owner: FoodFoodProductionFacility
domain_of:
- FoodFoodProductionFacility
- FoodHumanFoods
range: string
pattern: '[^s\|][^\r\n\t\|]*'
structured_pattern:
syntax: '{free_text}'
num_samp_collect:
name: num_samp_collect
description: placeholder description; linter will ignore this
title: number of samples collected
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0001224
alias: num_samp_collect
owner: FoodFoodProductionFacility
domain_of:
- FoodFoodProductionFacility
- FoodHumanFoods
range: string
pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
structured_pattern:
syntax: '{float} {unit}'
organism_count:
name: organism_count
description: placeholder description; linter will ignore this
title: organism count
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000103
alias: organism_count
owner: FoodFoodProductionFacility
domain_of:
- Agriculture
- Air
- BuiltEnvironment
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
- HostAssociated
- HumanAssociated
- HumanGut
- HumanOral
- HumanSkin
- HumanVaginal
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- PlantAssociated
- Sediment
- SymbiontAssociated
- WastewaterSludge
- Water
range: string
part_plant_animal:
name: part_plant_animal
description: placeholder description; linter will ignore this
title: part of plant or animal
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0001149
alias: part_plant_animal
owner: FoodFoodProductionFacility
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
range: string
pool_dna_extracts:
name: pool_dna_extracts
description: placeholder description; linter will ignore this
title: pooling of DNA extracts (if done)
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000325
alias: pool_dna_extracts
owner: FoodFoodProductionFacility
domain_of:
- Agriculture
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
- FoodHumanFoods
- Soil
range: string
repository_name:
name: repository_name
description: placeholder description; linter will ignore this
title: repository name
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0001152
alias: repository_name
owner: FoodFoodProductionFacility
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
range: string
pattern: '[^s\|][^\r\n\t\|]*'
structured_pattern:
syntax: '{free_text}'
room_dim:
name: room_dim
description: placeholder description; linter will ignore this
title: room dimensions
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000192
alias: room_dim
owner: FoodFoodProductionFacility
domain_of:
- BuiltEnvironment
- FoodFoodProductionFacility
range: string
samp_floor:
name: samp_floor
description: placeholder description; linter will ignore this
title: sampling floor
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000828
alias: samp_floor
owner: FoodFoodProductionFacility
domain_of:
- BuiltEnvironment
- FoodFoodProductionFacility
range: string
samp_loc_condition:
name: samp_loc_condition
description: placeholder description; linter will ignore this
title: sample location condition
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0001257
alias: samp_loc_condition
owner: FoodFoodProductionFacility
domain_of:
- FoodFoodProductionFacility
range: string
samp_pooling:
name: samp_pooling
description: placeholder description; linter will ignore this
title: sample pooling
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0001153
alias: samp_pooling
owner: FoodFoodProductionFacility
domain_of:
- Agriculture
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
range: string
pattern: '[^s\|][^\r\n\t\|]*'
structured_pattern:
syntax: '{free_text}'
samp_purpose:
name: samp_purpose
description: placeholder description; linter will ignore this
title: purpose of sampling
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0001151
alias: samp_purpose
owner: FoodFoodProductionFacility
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
range: string
samp_rep_biol:
name: samp_rep_biol
description: placeholder description; linter will ignore this
title: biological sample replicate
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0001226
alias: samp_rep_biol
owner: FoodFoodProductionFacility
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
- FoodHumanFoods
range: string
pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
structured_pattern:
syntax: '{float} {unit}'
samp_rep_tech:
name: samp_rep_tech
description: placeholder description; linter will ignore this
title: technical sample replicate
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0001227
alias: samp_rep_tech
owner: FoodFoodProductionFacility
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
- FoodHumanFoods
range: string
pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
structured_pattern:
syntax: '{float} {unit}'
samp_room_id:
name: samp_room_id
description: placeholder description; linter will ignore this
title: sampling room ID or name
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000244
alias: samp_room_id
owner: FoodFoodProductionFacility
domain_of:
- BuiltEnvironment
- FoodFoodProductionFacility
range: integer
samp_size:
name: samp_size
description: placeholder description; linter will ignore this
title: amount or size of sample collected
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000001
alias: samp_size
owner: FoodFoodProductionFacility
domain_of:
- Agriculture
- Checklist
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- Miuvig
range: string
pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
structured_pattern:
syntax: '{float} {unit}'
samp_store_dur:
name: samp_store_dur
description: placeholder description; linter will ignore this
title: sample storage duration
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000116
alias: samp_store_dur
owner: FoodFoodProductionFacility
domain_of:
- Agriculture
- Air
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
- HostAssociated
- HumanAssociated
- HumanGut
- HumanOral
- HumanSkin
- HumanVaginal
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- PlantAssociated
- Sediment
- SymbiontAssociated
- WastewaterSludge
- Water
range: string
pattern: P(?=\d+[YMWD])(\d+Y)?(\d+M)?(\d+W)?(\d+D)?(T(?=\d+[HMS])(\d+H)?(\d+M)?(\d+S)?)?
structured_pattern:
syntax: '{period}'
samp_store_loc:
name: samp_store_loc
description: placeholder description; linter will ignore this
title: sample storage location
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000755
alias: samp_store_loc
owner: FoodFoodProductionFacility
domain_of:
- Agriculture
- Air
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
- FoodHumanFoods
- HostAssociated
- HumanAssociated
- HumanGut
- HumanOral
- HumanSkin
- HumanVaginal
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- PlantAssociated
- Sediment
- SymbiontAssociated
- WastewaterSludge
- Water
range: string
pattern: '[^s\|][^\r\n\t\|]*'
structured_pattern:
syntax: '{free_text}'
samp_store_temp:
name: samp_store_temp
description: placeholder description; linter will ignore this
title: sample storage temperature
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000110
alias: samp_store_temp
owner: FoodFoodProductionFacility
domain_of:
- Agriculture
- Air
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
- HostAssociated
- HumanAssociated
- HumanGut
- HumanOral
- HumanSkin
- HumanVaginal
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- MicrobialMatBiofilm
- MiscellaneousNaturalOrArtificialEnvironment
- PlantAssociated
- Sediment
- SymbiontAssociated
- WastewaterSludge
- Water
range: string
pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
structured_pattern:
syntax: '{float} {unit}'
samp_surf_moisture:
name: samp_surf_moisture
description: placeholder description; linter will ignore this
title: sample surface moisture
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0001256
alias: samp_surf_moisture
owner: FoodFoodProductionFacility
domain_of:
- FoodFoodProductionFacility
range: string
samp_transport_cont:
name: samp_transport_cont
description: placeholder description; linter will ignore this
title: sample transport container
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0001230
alias: samp_transport_cont
owner: FoodFoodProductionFacility
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
- FoodHumanFoods
range: string
samp_transport_dur:
name: samp_transport_dur
description: placeholder description; linter will ignore this
title: sample transport duration
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0001231
alias: samp_transport_dur
owner: FoodFoodProductionFacility
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
- FoodHumanFoods
range: string
samp_transport_temp:
name: samp_transport_temp
description: placeholder description; linter will ignore this
title: sample transport temperature
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0001232
alias: samp_transport_temp
owner: FoodFoodProductionFacility
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
- FoodHumanFoods
range: string
samp_vol_we_dna_ext:
name: samp_vol_we_dna_ext
description: placeholder description; linter will ignore this
title: sample volume or weight for DNA extraction
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000111
alias: samp_vol_we_dna_ext
owner: FoodFoodProductionFacility
domain_of:
- Agriculture
- Air
- Checklist
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
- HostAssociated
- HumanAssociated
- HumanGut
- HumanOral
- HumanSkin
- HumanVaginal
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- MicrobialMatBiofilm
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- MiscellaneousNaturalOrArtificialEnvironment
- Miuvig
- PlantAssociated
- Sediment
- Soil
- SymbiontAssociated
- WastewaterSludge
- Water
range: string
pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
structured_pattern:
syntax: '{float} {unit}'
sequencing_kit:
name: sequencing_kit
description: placeholder description; linter will ignore this
title: sequencing kit
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0001155
alias: sequencing_kit
owner: FoodFoodProductionFacility
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
range: string
pattern: '[^s\|][^\r\n\t\|]*'
structured_pattern:
syntax: '{free_text}'
sequencing_location:
name: sequencing_location
description: placeholder description; linter will ignore this
title: sequencing location
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0001156
alias: sequencing_location
owner: FoodFoodProductionFacility
domain_of:
- Agriculture
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
range: string
pattern: '[^s\|][^\r\n\t\|]*'
structured_pattern:
syntax: '{free_text}'
spec_intended_cons:
name: spec_intended_cons
description: placeholder description; linter will ignore this
title: specific intended consumer
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0001234
alias: spec_intended_cons
owner: FoodFoodProductionFacility
domain_of:
- FoodFoodProductionFacility
range: string
pattern: '[^s\|][^\r\n\t\|]* [[a-zA-Z]+:[0-9]+]'
structured_pattern:
syntax: '{term_label} [{term_id}]'
ster_meth_samp_room:
name: ster_meth_samp_room
description: placeholder description; linter will ignore this
title: sampling room sterilization method
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0001259
alias: ster_meth_samp_room
owner: FoodFoodProductionFacility
domain_of:
- FoodFoodProductionFacility
range: string
study_design:
name: study_design
description: placeholder description; linter will ignore this
title: study design
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0001236
alias: study_design
owner: FoodFoodProductionFacility
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
- FoodHumanFoods
range: string
study_inc_dur:
name: study_inc_dur
description: placeholder description; linter will ignore this
title: study incubation duration
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0001237
alias: study_inc_dur
owner: FoodFoodProductionFacility
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
- FoodHumanFoods
range: string
study_inc_temp:
name: study_inc_temp
description: placeholder description; linter will ignore this
title: study incubation temperature
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0001238
alias: study_inc_temp
owner: FoodFoodProductionFacility
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
- FoodHumanFoods
range: string
pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
structured_pattern:
syntax: '{float} {unit}'
study_timecourse:
name: study_timecourse
description: placeholder description; linter will ignore this
title: time-course duration
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0001239
alias: study_timecourse
owner: FoodFoodProductionFacility
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
- FoodHumanFoods
range: string
pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
structured_pattern:
syntax: '{float} {unit}'
study_tmnt:
name: study_tmnt
description: placeholder description; linter will ignore this
title: study treatment
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0001240
alias: study_tmnt
owner: FoodFoodProductionFacility
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
- FoodHumanFoods
range: string
surf_material:
name: surf_material
description: placeholder description; linter will ignore this
title: surface material
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000758
alias: surf_material
owner: FoodFoodProductionFacility
domain_of:
- BuiltEnvironment
- FoodFoodProductionFacility
range: string
timepoint:
name: timepoint
description: placeholder description; linter will ignore this
title: timepoint
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0001173
alias: timepoint
owner: FoodFoodProductionFacility
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
range: string
coll_site_geo_feat:
name: coll_site_geo_feat
description: placeholder description; linter will ignore this
title: collection site geographic feature
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0001183
alias: coll_site_geo_feat
owner: FoodFoodProductionFacility
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
- FoodHumanFoods
range: string
required: true
collection_date:
name: collection_date
description: placeholder description; linter will ignore this
title: collection date
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000011
alias: collection_date
owner: FoodFoodProductionFacility
domain_of:
- Checklist
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- Miuvig
- SymbiontAssociated
range: string
required: true
env_broad_scale:
name: env_broad_scale
description: placeholder description; linter will ignore this
title: broad-scale environmental context
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000012
alias: env_broad_scale
owner: FoodFoodProductionFacility
domain_of:
- Checklist
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- Miuvig
- SymbiontAssociated
range: string
required: true
pattern: '[^s\|][^\r\n\t\|]* [[a-zA-Z]+:[0-9]+]'
structured_pattern:
syntax: '{term_label} [{term_id}]'
env_local_scale:
name: env_local_scale
description: placeholder description; linter will ignore this
title: local environmental context
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000013
alias: env_local_scale
owner: FoodFoodProductionFacility
domain_of:
- Checklist
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- Miuvig
- SymbiontAssociated
range: string
required: true
pattern: '[^s\|][^\r\n\t\|]* [[a-zA-Z]+:[0-9]+]'
structured_pattern:
syntax: '{term_label} [{term_id}]'
env_medium:
name: env_medium
description: placeholder description; linter will ignore this
title: environmental medium
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000014
alias: env_medium
owner: FoodFoodProductionFacility
domain_of:
- Checklist
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- Miuvig
- SymbiontAssociated
range: string
required: true
pattern: '[^s\|][^\r\n\t\|]* [[a-zA-Z]+:[0-9]+]'
structured_pattern:
syntax: '{term_label} [{term_id}]'
food_contact_surf:
name: food_contact_surf
description: placeholder description; linter will ignore this
title: food contact surface
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0001131
alias: food_contact_surf
owner: FoodFoodProductionFacility
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
range: string
required: true
food_product_qual:
name: food_product_qual
description: placeholder description; linter will ignore this
title: food product by quality
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0001213
alias: food_product_qual
owner: FoodFoodProductionFacility
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
- FoodHumanFoods
range: string
required: true
pattern: '[^s\|][^\r\n\t\|]* [[a-zA-Z]+:[0-9]+]'
structured_pattern:
syntax: '{term_label} [{term_id}]'
food_product_type:
name: food_product_type
description: placeholder description; linter will ignore this
title: food product type
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0001184
alias: food_product_type
owner: FoodFoodProductionFacility
domain_of:
- Agriculture
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
range: string
required: true
geo_loc_name:
name: geo_loc_name
description: placeholder description; linter will ignore this
title: geographic location (country and/or sea,region)
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000010
alias: geo_loc_name
owner: FoodFoodProductionFacility
domain_of:
- Checklist
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- Miuvig
- SymbiontAssociated
range: string
required: true
pattern: '[^s\|][^\r\n\t\|]*: [^s\|][^\r\n\t\|]*, [^s\|][^\r\n\t\|]*'
structured_pattern:
syntax: '{term}: {term}, {free_text}'
IFSAC_category:
name: IFSAC_category
description: placeholder description; linter will ignore this
title: Interagency Food Safety Analytics Collaboration (IFSAC) category
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0001179
alias: IFSAC_category
owner: FoodFoodProductionFacility
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
range: string
required: true
pattern: '[^s\|][^\r\n\t\|]*'
structured_pattern:
syntax: '{free_text}'
lat_lon:
name: lat_lon
description: placeholder description; linter will ignore this
title: geographic location (latitude and longitude)
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000009
alias: lat_lon
owner: FoodFoodProductionFacility
domain_of:
- Checklist
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- Miuvig
- SymbiontAssociated
range: string
required: true
pattern: '[-+]?([1-8]?\d(\.\d+)?|90(\.0+)?) [-+]?(180(\.0+)?|((1[0-7]\d)|([1-9]?\d))(\.\d+)?)'
structured_pattern:
syntax: '{lat} {lon}'
project_name:
name: project_name
description: placeholder description; linter will ignore this
title: project name
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000092
alias: project_name
owner: FoodFoodProductionFacility
domain_of:
- Air
- BuiltEnvironment
- Checklist
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
- HostAssociated
- HumanAssociated
- HumanGut
- HumanOral
- HumanSkin
- HumanVaginal
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
- MicrobialMatBiofilm
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- MiscellaneousNaturalOrArtificialEnvironment
- Miuvig
- PlantAssociated
- Sediment
- Soil
- SymbiontAssociated
- WastewaterSludge
- Water
range: string
required: true
pattern: '[^s\|][^\r\n\t\|]*'
structured_pattern:
syntax: '{free_text}'
samp_source_mat_cat:
name: samp_source_mat_cat
description: placeholder description; linter will ignore this
title: sample source material category
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0001154
alias: samp_source_mat_cat
owner: FoodFoodProductionFacility
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
range: string
required: true
pattern: '[^s\|][^\r\n\t\|]* [[a-zA-Z]+:[0-9]+]'
structured_pattern:
syntax: '{term_label} [{term_id}]'
samp_stor_device:
name: samp_stor_device
description: placeholder description; linter will ignore this
title: sample storage device
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0001228
alias: samp_stor_device
owner: FoodFoodProductionFacility
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
- FoodHumanFoods
range: string
required: true
samp_stor_media:
name: samp_stor_media
description: placeholder description; linter will ignore this
title: sample storage media
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0001229
alias: samp_stor_media
owner: FoodFoodProductionFacility
domain_of:
- FoodAnimalAndAnimalFeed
- FoodFoodProductionFacility
- FoodHumanFoods
range: string
required: true
samp_type:
name: samp_type
description: placeholder description; linter will ignore this
title: sample type
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000998
alias: samp_type
owner: FoodFoodProductionFacility
domain_of:
- FoodFarmEnvironment
- FoodFoodProductionFacility
- HydrocarbonResourcesCores
- HydrocarbonResourcesFluidsSwabs
range: string
required: true
pattern: '[^s\|][^\r\n\t\|]* [[a-zA-Z]+:[0-9]+]'
structured_pattern:
syntax: '{term_label} [{term_id}]'
seq_meth:
name: seq_meth
description: placeholder description; linter will ignore this
title: sequencing method
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000050
alias: seq_meth
owner: FoodFoodProductionFacility
domain_of:
- Agriculture
- Checklist
- FoodAnimalAndAnimalFeed
- FoodFarmEnvironment
- FoodFoodProductionFacility
- FoodHumanFoods
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- Mimag
- MimarksC
- MimarksS
- Mims
- Misag
- Miuvig
range: string
required: true
subspecf_gen_lin:
name: subspecf_gen_lin
description: placeholder description; linter will ignore this
title: subspecific genetic lineage
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
slot_uri: MIXS:0000020
alias: subspecf_gen_lin
owner: FoodFoodProductionFacility
domain_of:
- Checklist
- FoodFoodProductionFacility
- MigsBa
- MigsEu
- MigsOrg
- MigsPl
- MigsVi
- MimarksC
range: string
class_uri: MIXS:0016021