Class: Agriculture

name: Agriculture
description: placeholder description; linter will ignore this
title: agriculture
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
is_a: EnvironmentalPackage
slots:
- annot
- biotic_relationship
- climate_environment
- crop_rotation
- cur_vegetation
- cur_vegetation_meth
- drainage_class
- enrichment_protocol
- extreme_event
- fao_class
- farm_water_source
- fire
- flooding
- fungicide_regm
- gaseous_environment
- heavy_metals_meth
- herbicide_regm
- horizon_meth
- host_disease_stat
- humidity
- lib_layout
- local_class
- local_class_meth
- non_mineral_nutr_regm
- organism_count
- oxy_stat_samp
- perturbation
- pesticide_regm
- ph_meth
- ph_regm
- photosynt_activ
- photosynt_activ_meth
- plant_product
- plant_struc
- plant_water_method
- previous_land_use
- previous_land_use_meth
- profile_position
- rel_location
- salt_regm
- samp_pooling
- season_environment
- slope_aspect
- slope_gradient
- soil_cover
- standing_water_regm
- tillage
- tot_carb
- tot_org_c_meth
- tot_org_carb
- trophic_level
- water_temp_regm
- watering_regm
- adjacent_environment
- agrochem_addition
- ances_data
- anim_water_method
- annual_precpt
- annual_temp
- crop_yield
- cult_isol_date
- cur_land_use
- elev
- farm_equip
- farm_equip_san
- farm_equip_shared
- fertilizer_admin
- food_harvest_proc
- food_prod
- food_product_type
- food_trav_mode
- food_trav_vehic
- genetic_mod
- host_dry_mass
- host_subspecf_genlin
- isol_growth_condt
- lib_size
- library_prep_kit
- link_class_info
- link_climate_info
- lot_number
- misc_param
- plant_growth_med
- porosity
- pres_animal_insect
- root_med_carbon
- root_med_macronutr
- root_med_ph
- samp_store_temp
- season
- season_humidity
- season_precpt
- season_temp
- seq_quality_check
- sequencing_location
- size_frac_low
- size_frac_up
- soil_conductivity
- soil_pH
- soil_temp
- solar_irradiance
- sop
- source_mat_id
- spikein_strain
- water_pH
- water_source_shared
- adapters
- assembly_name
- chem_administration
- chimera_check
- food_source
- host_age
- host_common_name
- host_genotype
- host_height
- host_length
- host_life_stage
- host_phenotype
- host_spec_range
- host_taxid
- host_tot_mass
- lib_reads_seqd
- lib_screen
- lib_vector
- microbial_biomass
- mid
- nucl_acid_amp
- nucl_acid_ext
- pathogenicity
- pcr_cond
- pcr_primers
- pool_dna_extracts
- samp_mat_process
- samp_size
- samp_store_dur
- samp_store_loc
- samp_vol_we_dna_ext
- seq_meth
- sieving
- soil_type
- soil_type_meth
- specific_host
- store_cond
- target_gene
- target_subfragment
- temp
- assembly_qual
- assembly_software
slot_usage:
  adapters:
    name: adapters
    domain_of:
    - Agriculture
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    required: true
  adjacent_environment:
    name: adjacent_environment
    domain_of:
    - Agriculture
    - FoodFarmEnvironment
  agrochem_addition:
    name: agrochem_addition
    domain_of:
    - Agriculture
    - Soil
  ances_data:
    name: ances_data
    domain_of:
    - Agriculture
    - FoodFarmEnvironment
    - HostAssociated
    - PlantAssociated
  anim_water_method:
    name: anim_water_method
    domain_of:
    - Agriculture
    - FoodFarmEnvironment
  annot:
    name: annot
    domain_of:
    - Agriculture
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - Mims
    - Misag
    - Miuvig
    recommended: true
  annual_precpt:
    name: annual_precpt
    domain_of:
    - Agriculture
    - Soil
  annual_temp:
    name: annual_temp
    domain_of:
    - Agriculture
    - Soil
  assembly_name:
    name: assembly_name
    domain_of:
    - Agriculture
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - Mims
    - Misag
    - Miuvig
    required: true
  assembly_qual:
    name: assembly_qual
    domain_of:
    - Agriculture
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - Mims
    - Misag
    - Miuvig
  assembly_software:
    name: assembly_software
    domain_of:
    - Agriculture
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksS
    - Mims
    - Misag
    - Miuvig
  biotic_relationship:
    name: biotic_relationship
    domain_of:
    - Agriculture
    - Checklist
    - MigsBa
    - MigsEu
    - MigsVi
    - MimarksC
    - Miuvig
    recommended: true
  chem_administration:
    name: chem_administration
    domain_of:
    - Agriculture
    - Air
    - FoodFarmEnvironment
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - PlantAssociated
    - Sediment
    - SymbiontAssociated
    - WastewaterSludge
    - Water
    required: true
  chimera_check:
    name: chimera_check
    domain_of:
    - Agriculture
    - Checklist
    - MimarksC
    - MimarksS
    required: true
  climate_environment:
    name: climate_environment
    domain_of:
    - Agriculture
    - PlantAssociated
    recommended: true
  crop_rotation:
    name: crop_rotation
    domain_of:
    - Agriculture
    - FoodFarmEnvironment
    - Soil
    recommended: true
  crop_yield:
    name: crop_yield
    domain_of:
    - Agriculture
    - FoodFarmEnvironment
  cult_isol_date:
    name: cult_isol_date
    domain_of:
    - Agriculture
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
  cur_land_use:
    name: cur_land_use
    domain_of:
    - Agriculture
    - Soil
  cur_vegetation:
    name: cur_vegetation
    domain_of:
    - Agriculture
    - Soil
    recommended: true
  cur_vegetation_meth:
    name: cur_vegetation_meth
    domain_of:
    - Agriculture
    - Soil
    recommended: true
  drainage_class:
    name: drainage_class
    domain_of:
    - Agriculture
    - Soil
    recommended: true
  elev:
    name: elev
    domain_of:
    - Agriculture
    - Air
    - Checklist
    - HostAssociated
    - HydrocarbonResourcesCores
    - MicrobialMatBiofilm
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - MiscellaneousNaturalOrArtificialEnvironment
    - Miuvig
    - PlantAssociated
    - Sediment
    - Soil
    - SymbiontAssociated
    - Water
  enrichment_protocol:
    name: enrichment_protocol
    domain_of:
    - Agriculture
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    recommended: true
  extreme_event:
    name: extreme_event
    domain_of:
    - Agriculture
    - Soil
    recommended: true
  fao_class:
    name: fao_class
    domain_of:
    - Agriculture
    - Soil
    recommended: true
  farm_equip:
    name: farm_equip
    domain_of:
    - Agriculture
    - FoodFarmEnvironment
  farm_equip_san:
    name: farm_equip_san
    domain_of:
    - Agriculture
    - FoodFarmEnvironment
  farm_equip_shared:
    name: farm_equip_shared
    domain_of:
    - Agriculture
    - FoodFarmEnvironment
  farm_water_source:
    name: farm_water_source
    domain_of:
    - Agriculture
    - FoodFarmEnvironment
    recommended: true
  fertilizer_admin:
    name: fertilizer_admin
    domain_of:
    - Agriculture
    - FoodFarmEnvironment
  fire:
    name: fire
    domain_of:
    - Agriculture
    - Soil
    recommended: true
  flooding:
    name: flooding
    domain_of:
    - Agriculture
    - Soil
    recommended: true
  food_harvest_proc:
    name: food_harvest_proc
    domain_of:
    - Agriculture
    - FoodFarmEnvironment
  food_prod:
    name: food_prod
    domain_of:
    - Agriculture
    - FoodAnimalAndAnimalFeed
    - FoodFoodProductionFacility
    - FoodHumanFoods
  food_product_type:
    name: food_product_type
    domain_of:
    - Agriculture
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
  food_source:
    name: food_source
    domain_of:
    - Agriculture
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    required: true
  food_trav_mode:
    name: food_trav_mode
    domain_of:
    - Agriculture
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
  food_trav_vehic:
    name: food_trav_vehic
    domain_of:
    - Agriculture
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
  fungicide_regm:
    name: fungicide_regm
    domain_of:
    - Agriculture
    - PlantAssociated
    recommended: true
  gaseous_environment:
    name: gaseous_environment
    domain_of:
    - Agriculture
    - PlantAssociated
    recommended: true
  genetic_mod:
    name: genetic_mod
    domain_of:
    - Agriculture
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - HostAssociated
    - PlantAssociated
  heavy_metals_meth:
    name: heavy_metals_meth
    domain_of:
    - Agriculture
    - Soil
    recommended: true
  herbicide_regm:
    name: herbicide_regm
    domain_of:
    - Agriculture
    - PlantAssociated
    recommended: true
  horizon_meth:
    name: horizon_meth
    domain_of:
    - Agriculture
    - Soil
    recommended: true
  host_age:
    name: host_age
    domain_of:
    - Agriculture
    - FoodFarmEnvironment
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - PlantAssociated
    - SymbiontAssociated
    required: true
  host_common_name:
    name: host_common_name
    domain_of:
    - Agriculture
    - HostAssociated
    - PlantAssociated
    - SymbiontAssociated
    required: true
  host_disease_stat:
    name: host_disease_stat
    domain_of:
    - Agriculture
    - Checklist
    - FoodFarmEnvironment
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - MigsBa
    - MigsEu
    - MigsVi
    - Miuvig
    - PlantAssociated
    recommended: true
  host_dry_mass:
    name: host_dry_mass
    domain_of:
    - Agriculture
    - FoodFarmEnvironment
    - HostAssociated
    - PlantAssociated
    - SymbiontAssociated
  host_genotype:
    name: host_genotype
    domain_of:
    - Agriculture
    - FoodFarmEnvironment
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - PlantAssociated
    - SymbiontAssociated
    required: true
  host_height:
    name: host_height
    domain_of:
    - Agriculture
    - FoodFarmEnvironment
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - PlantAssociated
    - SymbiontAssociated
    required: true
  host_length:
    name: host_length
    domain_of:
    - Agriculture
    - FoodFarmEnvironment
    - HostAssociated
    - PlantAssociated
    - SymbiontAssociated
    required: true
  host_life_stage:
    name: host_life_stage
    domain_of:
    - Agriculture
    - HostAssociated
    - PlantAssociated
    - SymbiontAssociated
    required: true
  host_phenotype:
    name: host_phenotype
    domain_of:
    - Agriculture
    - FoodFarmEnvironment
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - PlantAssociated
    - SymbiontAssociated
    required: true
  host_spec_range:
    name: host_spec_range
    domain_of:
    - Agriculture
    - Checklist
    - MigsBa
    - MigsEu
    - MigsPl
    - MigsVi
    - Miuvig
    required: true
  host_subspecf_genlin:
    name: host_subspecf_genlin
    domain_of:
    - Agriculture
    - FoodFarmEnvironment
    - HostAssociated
    - PlantAssociated
  host_taxid:
    name: host_taxid
    domain_of:
    - Agriculture
    - FoodFarmEnvironment
    - HostAssociated
    - PlantAssociated
    - SymbiontAssociated
    required: true
  host_tot_mass:
    name: host_tot_mass
    domain_of:
    - Agriculture
    - FoodFarmEnvironment
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - PlantAssociated
    - SymbiontAssociated
    required: true
  humidity:
    name: humidity
    domain_of:
    - Agriculture
    - Air
    - FoodFarmEnvironment
    recommended: true
  isol_growth_condt:
    name: isol_growth_condt
    domain_of:
    - Agriculture
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - MimarksC
  lib_layout:
    name: lib_layout
    domain_of:
    - Agriculture
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    recommended: true
  lib_reads_seqd:
    name: lib_reads_seqd
    domain_of:
    - Agriculture
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    required: true
  lib_screen:
    name: lib_screen
    domain_of:
    - Agriculture
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    required: true
  lib_size:
    name: lib_size
    domain_of:
    - Agriculture
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksS
    - Mims
    - Misag
    - Miuvig
  lib_vector:
    name: lib_vector
    domain_of:
    - Agriculture
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    required: true
  library_prep_kit:
    name: library_prep_kit
    domain_of:
    - Agriculture
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
  link_class_info:
    name: link_class_info
    domain_of:
    - Agriculture
    - Soil
  link_climate_info:
    name: link_climate_info
    domain_of:
    - Agriculture
    - Soil
  local_class:
    name: local_class
    domain_of:
    - Agriculture
    - Soil
    recommended: true
  local_class_meth:
    name: local_class_meth
    domain_of:
    - Agriculture
    - Soil
    recommended: true
  lot_number:
    name: lot_number
    domain_of:
    - Agriculture
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
  microbial_biomass:
    name: microbial_biomass
    domain_of:
    - Agriculture
    - Soil
    required: true
  mid:
    name: mid
    domain_of:
    - Agriculture
    - Checklist
    - Mimag
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    required: true
  misc_param:
    name: misc_param
    domain_of:
    - Agriculture
    - Air
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - PlantAssociated
    - Sediment
    - Soil
    - SymbiontAssociated
    - WastewaterSludge
    - Water
  non_mineral_nutr_regm:
    name: non_mineral_nutr_regm
    domain_of:
    - Agriculture
    - PlantAssociated
    recommended: true
  nucl_acid_amp:
    name: nucl_acid_amp
    domain_of:
    - Agriculture
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    required: true
  nucl_acid_ext:
    name: nucl_acid_ext
    domain_of:
    - Agriculture
    - Checklist
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    required: true
  organism_count:
    name: organism_count
    domain_of:
    - Agriculture
    - Air
    - BuiltEnvironment
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - PlantAssociated
    - Sediment
    - SymbiontAssociated
    - WastewaterSludge
    - Water
    recommended: true
  oxy_stat_samp:
    name: oxy_stat_samp
    domain_of:
    - Agriculture
    - Air
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - PlantAssociated
    - Sediment
    - SymbiontAssociated
    - WastewaterSludge
    - Water
    recommended: true
  pathogenicity:
    name: pathogenicity
    domain_of:
    - Agriculture
    - Checklist
    - MigsBa
    - MigsEu
    - MigsVi
    - Miuvig
    required: true
  pcr_cond:
    name: pcr_cond
    domain_of:
    - Agriculture
    - Checklist
    - MimarksC
    - MimarksS
    required: true
  pcr_primers:
    name: pcr_primers
    domain_of:
    - Agriculture
    - Checklist
    - MimarksC
    - MimarksS
    required: true
  perturbation:
    name: perturbation
    domain_of:
    - Agriculture
    - Air
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodHumanFoods
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - PlantAssociated
    - Sediment
    - SymbiontAssociated
    - WastewaterSludge
    - Water
    recommended: true
  pesticide_regm:
    name: pesticide_regm
    domain_of:
    - Agriculture
    - PlantAssociated
    recommended: true
  ph_meth:
    name: ph_meth
    domain_of:
    - Agriculture
    - FoodFarmEnvironment
    - Soil
    recommended: true
  ph_regm:
    name: ph_regm
    domain_of:
    - Agriculture
    - PlantAssociated
    recommended: true
  photosynt_activ:
    name: photosynt_activ
    domain_of:
    - Agriculture
    recommended: true
  photosynt_activ_meth:
    name: photosynt_activ_meth
    domain_of:
    - Agriculture
    recommended: true
  plant_growth_med:
    name: plant_growth_med
    domain_of:
    - Agriculture
    - FoodFarmEnvironment
    - PlantAssociated
  plant_product:
    name: plant_product
    domain_of:
    - Agriculture
    - PlantAssociated
    recommended: true
  plant_struc:
    name: plant_struc
    domain_of:
    - Agriculture
    - PlantAssociated
    recommended: true
  plant_water_method:
    name: plant_water_method
    domain_of:
    - Agriculture
    - FoodFarmEnvironment
    recommended: true
  pool_dna_extracts:
    name: pool_dna_extracts
    domain_of:
    - Agriculture
    - FoodAnimalAndAnimalFeed
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - Soil
    required: true
  porosity:
    name: porosity
    domain_of:
    - Agriculture
    - HydrocarbonResourcesCores
    - Sediment
  pres_animal_insect:
    name: pres_animal_insect
    domain_of:
    - Agriculture
    - BuiltEnvironment
  previous_land_use:
    name: previous_land_use
    domain_of:
    - Agriculture
    - FoodFarmEnvironment
    - Soil
    recommended: true
  previous_land_use_meth:
    name: previous_land_use_meth
    domain_of:
    - Agriculture
    - Soil
    recommended: true
  profile_position:
    name: profile_position
    domain_of:
    - Agriculture
    - Soil
    recommended: true
  rel_location:
    name: rel_location
    domain_of:
    - Agriculture
    - FoodFarmEnvironment
    recommended: true
  root_med_carbon:
    name: root_med_carbon
    domain_of:
    - Agriculture
    - FoodFarmEnvironment
    - PlantAssociated
  root_med_macronutr:
    name: root_med_macronutr
    domain_of:
    - Agriculture
    - FoodFarmEnvironment
    - PlantAssociated
  root_med_ph:
    name: root_med_ph
    domain_of:
    - Agriculture
    - FoodFarmEnvironment
    - PlantAssociated
  salt_regm:
    name: salt_regm
    domain_of:
    - Agriculture
    - PlantAssociated
    recommended: true
  samp_mat_process:
    name: samp_mat_process
    domain_of:
    - Agriculture
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    required: true
  samp_pooling:
    name: samp_pooling
    domain_of:
    - Agriculture
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    recommended: true
  samp_size:
    name: samp_size
    domain_of:
    - Agriculture
    - Checklist
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    required: true
  samp_store_dur:
    name: samp_store_dur
    domain_of:
    - Agriculture
    - Air
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - PlantAssociated
    - Sediment
    - SymbiontAssociated
    - WastewaterSludge
    - Water
    required: true
  samp_store_loc:
    name: samp_store_loc
    domain_of:
    - Agriculture
    - Air
    - FoodAnimalAndAnimalFeed
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - PlantAssociated
    - Sediment
    - SymbiontAssociated
    - WastewaterSludge
    - Water
    required: true
  samp_store_temp:
    name: samp_store_temp
    domain_of:
    - Agriculture
    - Air
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - PlantAssociated
    - Sediment
    - SymbiontAssociated
    - WastewaterSludge
    - Water
  samp_vol_we_dna_ext:
    name: samp_vol_we_dna_ext
    domain_of:
    - Agriculture
    - Air
    - Checklist
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - MiscellaneousNaturalOrArtificialEnvironment
    - Miuvig
    - PlantAssociated
    - Sediment
    - Soil
    - SymbiontAssociated
    - WastewaterSludge
    - Water
    required: true
  season:
    name: season
    domain_of:
    - Agriculture
    - BuiltEnvironment
    - FoodFarmEnvironment
  season_environment:
    name: season_environment
    domain_of:
    - Agriculture
    - PlantAssociated
    recommended: true
  season_humidity:
    name: season_humidity
    domain_of:
    - Agriculture
    - FoodFarmEnvironment
  season_precpt:
    name: season_precpt
    domain_of:
    - Agriculture
    - FoodFarmEnvironment
    - Soil
  season_temp:
    name: season_temp
    domain_of:
    - Agriculture
    - FoodFarmEnvironment
    - Soil
  seq_meth:
    name: seq_meth
    domain_of:
    - Agriculture
    - Checklist
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    required: true
  seq_quality_check:
    name: seq_quality_check
    domain_of:
    - Agriculture
    - Checklist
    - MimarksC
    - MimarksS
  sequencing_location:
    name: sequencing_location
    domain_of:
    - Agriculture
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
  sieving:
    name: sieving
    domain_of:
    - Agriculture
    - Soil
    required: true
  size_frac_low:
    name: size_frac_low
    domain_of:
    - Agriculture
    - FoodFarmEnvironment
    - Water
  size_frac_up:
    name: size_frac_up
    domain_of:
    - Agriculture
    - FoodFarmEnvironment
    - Water
  slope_aspect:
    name: slope_aspect
    domain_of:
    - Agriculture
    - Soil
    recommended: true
  slope_gradient:
    name: slope_gradient
    domain_of:
    - Agriculture
    - Soil
    recommended: true
  soil_conductivity:
    name: soil_conductivity
    domain_of:
    - Agriculture
    - FoodFarmEnvironment
  soil_cover:
    name: soil_cover
    domain_of:
    - Agriculture
    - FoodFarmEnvironment
    recommended: true
  soil_pH:
    name: soil_pH
    domain_of:
    - Agriculture
    - FoodFarmEnvironment
  soil_temp:
    name: soil_temp
    domain_of:
    - Agriculture
    - FoodFarmEnvironment
  soil_type:
    name: soil_type
    domain_of:
    - Agriculture
    - FoodFarmEnvironment
    - Soil
    required: true
  soil_type_meth:
    name: soil_type_meth
    domain_of:
    - Agriculture
    - FoodFarmEnvironment
    - Soil
    required: true
  solar_irradiance:
    name: solar_irradiance
    domain_of:
    - Agriculture
    - Air
    - FoodFarmEnvironment
  sop:
    name: sop
    domain_of:
    - Agriculture
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
  source_mat_id:
    name: source_mat_id
    domain_of:
    - Agriculture
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    - SymbiontAssociated
  specific_host:
    name: specific_host
    domain_of:
    - Agriculture
    - Checklist
    - MigsBa
    - MigsEu
    - MigsPl
    - MigsVi
    - Miuvig
    required: true
  spikein_strain:
    name: spikein_strain
    domain_of:
    - Agriculture
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodHumanFoods
  standing_water_regm:
    name: standing_water_regm
    domain_of:
    - Agriculture
    - PlantAssociated
    recommended: true
  store_cond:
    name: store_cond
    domain_of:
    - Agriculture
    - Soil
    required: true
  target_gene:
    name: target_gene
    domain_of:
    - Agriculture
    - Checklist
    - MimarksC
    - MimarksS
    required: true
  target_subfragment:
    name: target_subfragment
    domain_of:
    - Agriculture
    - Checklist
    - MimarksC
    - MimarksS
    required: true
  temp:
    name: temp
    domain_of:
    - Agriculture
    - Air
    - Checklist
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodHumanFoods
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - MiscellaneousNaturalOrArtificialEnvironment
    - Miuvig
    - PlantAssociated
    - Sediment
    - Soil
    - SymbiontAssociated
    - WastewaterSludge
    - Water
    required: true
  tillage:
    name: tillage
    domain_of:
    - Agriculture
    - FoodFarmEnvironment
    - Soil
    recommended: true
  tot_carb:
    name: tot_carb
    domain_of:
    - Agriculture
    - MicrobialMatBiofilm
    - Sediment
    recommended: true
  tot_org_c_meth:
    name: tot_org_c_meth
    domain_of:
    - Agriculture
    - FoodFarmEnvironment
    - Soil
    recommended: true
  tot_org_carb:
    name: tot_org_carb
    domain_of:
    - Agriculture
    - FoodFarmEnvironment
    - MicrobialMatBiofilm
    - Sediment
    - Soil
    recommended: true
  trophic_level:
    name: trophic_level
    domain_of:
    - Agriculture
    - Checklist
    - MigsBa
    - MigsEu
    - MimarksC
    recommended: true
  water_pH:
    name: water_pH
    domain_of:
    - Agriculture
    - FoodFarmEnvironment
  water_source_shared:
    name: water_source_shared
    domain_of:
    - Agriculture
    - FoodFarmEnvironment
  water_temp_regm:
    name: water_temp_regm
    domain_of:
    - Agriculture
    - PlantAssociated
    recommended: true
  watering_regm:
    name: watering_regm
    domain_of:
    - Agriculture
    - PlantAssociated
    recommended: true
class_uri: MIXS:0016018

name: Agriculture
description: placeholder description; linter will ignore this
title: agriculture
from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
rank: 1000
is_a: EnvironmentalPackage
slot_usage:
  adapters:
    name: adapters
    domain_of:
    - Agriculture
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    required: true
  adjacent_environment:
    name: adjacent_environment
    domain_of:
    - Agriculture
    - FoodFarmEnvironment
  agrochem_addition:
    name: agrochem_addition
    domain_of:
    - Agriculture
    - Soil
  ances_data:
    name: ances_data
    domain_of:
    - Agriculture
    - FoodFarmEnvironment
    - HostAssociated
    - PlantAssociated
  anim_water_method:
    name: anim_water_method
    domain_of:
    - Agriculture
    - FoodFarmEnvironment
  annot:
    name: annot
    domain_of:
    - Agriculture
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - Mims
    - Misag
    - Miuvig
    recommended: true
  annual_precpt:
    name: annual_precpt
    domain_of:
    - Agriculture
    - Soil
  annual_temp:
    name: annual_temp
    domain_of:
    - Agriculture
    - Soil
  assembly_name:
    name: assembly_name
    domain_of:
    - Agriculture
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - Mims
    - Misag
    - Miuvig
    required: true
  assembly_qual:
    name: assembly_qual
    domain_of:
    - Agriculture
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - Mims
    - Misag
    - Miuvig
  assembly_software:
    name: assembly_software
    domain_of:
    - Agriculture
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksS
    - Mims
    - Misag
    - Miuvig
  biotic_relationship:
    name: biotic_relationship
    domain_of:
    - Agriculture
    - Checklist
    - MigsBa
    - MigsEu
    - MigsVi
    - MimarksC
    - Miuvig
    recommended: true
  chem_administration:
    name: chem_administration
    domain_of:
    - Agriculture
    - Air
    - FoodFarmEnvironment
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - PlantAssociated
    - Sediment
    - SymbiontAssociated
    - WastewaterSludge
    - Water
    required: true
  chimera_check:
    name: chimera_check
    domain_of:
    - Agriculture
    - Checklist
    - MimarksC
    - MimarksS
    required: true
  climate_environment:
    name: climate_environment
    domain_of:
    - Agriculture
    - PlantAssociated
    recommended: true
  crop_rotation:
    name: crop_rotation
    domain_of:
    - Agriculture
    - FoodFarmEnvironment
    - Soil
    recommended: true
  crop_yield:
    name: crop_yield
    domain_of:
    - Agriculture
    - FoodFarmEnvironment
  cult_isol_date:
    name: cult_isol_date
    domain_of:
    - Agriculture
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
  cur_land_use:
    name: cur_land_use
    domain_of:
    - Agriculture
    - Soil
  cur_vegetation:
    name: cur_vegetation
    domain_of:
    - Agriculture
    - Soil
    recommended: true
  cur_vegetation_meth:
    name: cur_vegetation_meth
    domain_of:
    - Agriculture
    - Soil
    recommended: true
  drainage_class:
    name: drainage_class
    domain_of:
    - Agriculture
    - Soil
    recommended: true
  elev:
    name: elev
    domain_of:
    - Agriculture
    - Air
    - Checklist
    - HostAssociated
    - HydrocarbonResourcesCores
    - MicrobialMatBiofilm
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - MiscellaneousNaturalOrArtificialEnvironment
    - Miuvig
    - PlantAssociated
    - Sediment
    - Soil
    - SymbiontAssociated
    - Water
  enrichment_protocol:
    name: enrichment_protocol
    domain_of:
    - Agriculture
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    recommended: true
  extreme_event:
    name: extreme_event
    domain_of:
    - Agriculture
    - Soil
    recommended: true
  fao_class:
    name: fao_class
    domain_of:
    - Agriculture
    - Soil
    recommended: true
  farm_equip:
    name: farm_equip
    domain_of:
    - Agriculture
    - FoodFarmEnvironment
  farm_equip_san:
    name: farm_equip_san
    domain_of:
    - Agriculture
    - FoodFarmEnvironment
  farm_equip_shared:
    name: farm_equip_shared
    domain_of:
    - Agriculture
    - FoodFarmEnvironment
  farm_water_source:
    name: farm_water_source
    domain_of:
    - Agriculture
    - FoodFarmEnvironment
    recommended: true
  fertilizer_admin:
    name: fertilizer_admin
    domain_of:
    - Agriculture
    - FoodFarmEnvironment
  fire:
    name: fire
    domain_of:
    - Agriculture
    - Soil
    recommended: true
  flooding:
    name: flooding
    domain_of:
    - Agriculture
    - Soil
    recommended: true
  food_harvest_proc:
    name: food_harvest_proc
    domain_of:
    - Agriculture
    - FoodFarmEnvironment
  food_prod:
    name: food_prod
    domain_of:
    - Agriculture
    - FoodAnimalAndAnimalFeed
    - FoodFoodProductionFacility
    - FoodHumanFoods
  food_product_type:
    name: food_product_type
    domain_of:
    - Agriculture
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
  food_source:
    name: food_source
    domain_of:
    - Agriculture
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    required: true
  food_trav_mode:
    name: food_trav_mode
    domain_of:
    - Agriculture
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
  food_trav_vehic:
    name: food_trav_vehic
    domain_of:
    - Agriculture
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
  fungicide_regm:
    name: fungicide_regm
    domain_of:
    - Agriculture
    - PlantAssociated
    recommended: true
  gaseous_environment:
    name: gaseous_environment
    domain_of:
    - Agriculture
    - PlantAssociated
    recommended: true
  genetic_mod:
    name: genetic_mod
    domain_of:
    - Agriculture
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - HostAssociated
    - PlantAssociated
  heavy_metals_meth:
    name: heavy_metals_meth
    domain_of:
    - Agriculture
    - Soil
    recommended: true
  herbicide_regm:
    name: herbicide_regm
    domain_of:
    - Agriculture
    - PlantAssociated
    recommended: true
  horizon_meth:
    name: horizon_meth
    domain_of:
    - Agriculture
    - Soil
    recommended: true
  host_age:
    name: host_age
    domain_of:
    - Agriculture
    - FoodFarmEnvironment
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - PlantAssociated
    - SymbiontAssociated
    required: true
  host_common_name:
    name: host_common_name
    domain_of:
    - Agriculture
    - HostAssociated
    - PlantAssociated
    - SymbiontAssociated
    required: true
  host_disease_stat:
    name: host_disease_stat
    domain_of:
    - Agriculture
    - Checklist
    - FoodFarmEnvironment
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - MigsBa
    - MigsEu
    - MigsVi
    - Miuvig
    - PlantAssociated
    recommended: true
  host_dry_mass:
    name: host_dry_mass
    domain_of:
    - Agriculture
    - FoodFarmEnvironment
    - HostAssociated
    - PlantAssociated
    - SymbiontAssociated
  host_genotype:
    name: host_genotype
    domain_of:
    - Agriculture
    - FoodFarmEnvironment
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - PlantAssociated
    - SymbiontAssociated
    required: true
  host_height:
    name: host_height
    domain_of:
    - Agriculture
    - FoodFarmEnvironment
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - PlantAssociated
    - SymbiontAssociated
    required: true
  host_length:
    name: host_length
    domain_of:
    - Agriculture
    - FoodFarmEnvironment
    - HostAssociated
    - PlantAssociated
    - SymbiontAssociated
    required: true
  host_life_stage:
    name: host_life_stage
    domain_of:
    - Agriculture
    - HostAssociated
    - PlantAssociated
    - SymbiontAssociated
    required: true
  host_phenotype:
    name: host_phenotype
    domain_of:
    - Agriculture
    - FoodFarmEnvironment
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - PlantAssociated
    - SymbiontAssociated
    required: true
  host_spec_range:
    name: host_spec_range
    domain_of:
    - Agriculture
    - Checklist
    - MigsBa
    - MigsEu
    - MigsPl
    - MigsVi
    - Miuvig
    required: true
  host_subspecf_genlin:
    name: host_subspecf_genlin
    domain_of:
    - Agriculture
    - FoodFarmEnvironment
    - HostAssociated
    - PlantAssociated
  host_taxid:
    name: host_taxid
    domain_of:
    - Agriculture
    - FoodFarmEnvironment
    - HostAssociated
    - PlantAssociated
    - SymbiontAssociated
    required: true
  host_tot_mass:
    name: host_tot_mass
    domain_of:
    - Agriculture
    - FoodFarmEnvironment
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - PlantAssociated
    - SymbiontAssociated
    required: true
  humidity:
    name: humidity
    domain_of:
    - Agriculture
    - Air
    - FoodFarmEnvironment
    recommended: true
  isol_growth_condt:
    name: isol_growth_condt
    domain_of:
    - Agriculture
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - MimarksC
  lib_layout:
    name: lib_layout
    domain_of:
    - Agriculture
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    recommended: true
  lib_reads_seqd:
    name: lib_reads_seqd
    domain_of:
    - Agriculture
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    required: true
  lib_screen:
    name: lib_screen
    domain_of:
    - Agriculture
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    required: true
  lib_size:
    name: lib_size
    domain_of:
    - Agriculture
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksS
    - Mims
    - Misag
    - Miuvig
  lib_vector:
    name: lib_vector
    domain_of:
    - Agriculture
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    required: true
  library_prep_kit:
    name: library_prep_kit
    domain_of:
    - Agriculture
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
  link_class_info:
    name: link_class_info
    domain_of:
    - Agriculture
    - Soil
  link_climate_info:
    name: link_climate_info
    domain_of:
    - Agriculture
    - Soil
  local_class:
    name: local_class
    domain_of:
    - Agriculture
    - Soil
    recommended: true
  local_class_meth:
    name: local_class_meth
    domain_of:
    - Agriculture
    - Soil
    recommended: true
  lot_number:
    name: lot_number
    domain_of:
    - Agriculture
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
  microbial_biomass:
    name: microbial_biomass
    domain_of:
    - Agriculture
    - Soil
    required: true
  mid:
    name: mid
    domain_of:
    - Agriculture
    - Checklist
    - Mimag
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    required: true
  misc_param:
    name: misc_param
    domain_of:
    - Agriculture
    - Air
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - PlantAssociated
    - Sediment
    - Soil
    - SymbiontAssociated
    - WastewaterSludge
    - Water
  non_mineral_nutr_regm:
    name: non_mineral_nutr_regm
    domain_of:
    - Agriculture
    - PlantAssociated
    recommended: true
  nucl_acid_amp:
    name: nucl_acid_amp
    domain_of:
    - Agriculture
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    required: true
  nucl_acid_ext:
    name: nucl_acid_ext
    domain_of:
    - Agriculture
    - Checklist
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    required: true
  organism_count:
    name: organism_count
    domain_of:
    - Agriculture
    - Air
    - BuiltEnvironment
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - PlantAssociated
    - Sediment
    - SymbiontAssociated
    - WastewaterSludge
    - Water
    recommended: true
  oxy_stat_samp:
    name: oxy_stat_samp
    domain_of:
    - Agriculture
    - Air
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - PlantAssociated
    - Sediment
    - SymbiontAssociated
    - WastewaterSludge
    - Water
    recommended: true
  pathogenicity:
    name: pathogenicity
    domain_of:
    - Agriculture
    - Checklist
    - MigsBa
    - MigsEu
    - MigsVi
    - Miuvig
    required: true
  pcr_cond:
    name: pcr_cond
    domain_of:
    - Agriculture
    - Checklist
    - MimarksC
    - MimarksS
    required: true
  pcr_primers:
    name: pcr_primers
    domain_of:
    - Agriculture
    - Checklist
    - MimarksC
    - MimarksS
    required: true
  perturbation:
    name: perturbation
    domain_of:
    - Agriculture
    - Air
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodHumanFoods
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - PlantAssociated
    - Sediment
    - SymbiontAssociated
    - WastewaterSludge
    - Water
    recommended: true
  pesticide_regm:
    name: pesticide_regm
    domain_of:
    - Agriculture
    - PlantAssociated
    recommended: true
  ph_meth:
    name: ph_meth
    domain_of:
    - Agriculture
    - FoodFarmEnvironment
    - Soil
    recommended: true
  ph_regm:
    name: ph_regm
    domain_of:
    - Agriculture
    - PlantAssociated
    recommended: true
  photosynt_activ:
    name: photosynt_activ
    domain_of:
    - Agriculture
    recommended: true
  photosynt_activ_meth:
    name: photosynt_activ_meth
    domain_of:
    - Agriculture
    recommended: true
  plant_growth_med:
    name: plant_growth_med
    domain_of:
    - Agriculture
    - FoodFarmEnvironment
    - PlantAssociated
  plant_product:
    name: plant_product
    domain_of:
    - Agriculture
    - PlantAssociated
    recommended: true
  plant_struc:
    name: plant_struc
    domain_of:
    - Agriculture
    - PlantAssociated
    recommended: true
  plant_water_method:
    name: plant_water_method
    domain_of:
    - Agriculture
    - FoodFarmEnvironment
    recommended: true
  pool_dna_extracts:
    name: pool_dna_extracts
    domain_of:
    - Agriculture
    - FoodAnimalAndAnimalFeed
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - Soil
    required: true
  porosity:
    name: porosity
    domain_of:
    - Agriculture
    - HydrocarbonResourcesCores
    - Sediment
  pres_animal_insect:
    name: pres_animal_insect
    domain_of:
    - Agriculture
    - BuiltEnvironment
  previous_land_use:
    name: previous_land_use
    domain_of:
    - Agriculture
    - FoodFarmEnvironment
    - Soil
    recommended: true
  previous_land_use_meth:
    name: previous_land_use_meth
    domain_of:
    - Agriculture
    - Soil
    recommended: true
  profile_position:
    name: profile_position
    domain_of:
    - Agriculture
    - Soil
    recommended: true
  rel_location:
    name: rel_location
    domain_of:
    - Agriculture
    - FoodFarmEnvironment
    recommended: true
  root_med_carbon:
    name: root_med_carbon
    domain_of:
    - Agriculture
    - FoodFarmEnvironment
    - PlantAssociated
  root_med_macronutr:
    name: root_med_macronutr
    domain_of:
    - Agriculture
    - FoodFarmEnvironment
    - PlantAssociated
  root_med_ph:
    name: root_med_ph
    domain_of:
    - Agriculture
    - FoodFarmEnvironment
    - PlantAssociated
  salt_regm:
    name: salt_regm
    domain_of:
    - Agriculture
    - PlantAssociated
    recommended: true
  samp_mat_process:
    name: samp_mat_process
    domain_of:
    - Agriculture
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    required: true
  samp_pooling:
    name: samp_pooling
    domain_of:
    - Agriculture
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    recommended: true
  samp_size:
    name: samp_size
    domain_of:
    - Agriculture
    - Checklist
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    required: true
  samp_store_dur:
    name: samp_store_dur
    domain_of:
    - Agriculture
    - Air
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - PlantAssociated
    - Sediment
    - SymbiontAssociated
    - WastewaterSludge
    - Water
    required: true
  samp_store_loc:
    name: samp_store_loc
    domain_of:
    - Agriculture
    - Air
    - FoodAnimalAndAnimalFeed
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - PlantAssociated
    - Sediment
    - SymbiontAssociated
    - WastewaterSludge
    - Water
    required: true
  samp_store_temp:
    name: samp_store_temp
    domain_of:
    - Agriculture
    - Air
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - PlantAssociated
    - Sediment
    - SymbiontAssociated
    - WastewaterSludge
    - Water
  samp_vol_we_dna_ext:
    name: samp_vol_we_dna_ext
    domain_of:
    - Agriculture
    - Air
    - Checklist
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - MiscellaneousNaturalOrArtificialEnvironment
    - Miuvig
    - PlantAssociated
    - Sediment
    - Soil
    - SymbiontAssociated
    - WastewaterSludge
    - Water
    required: true
  season:
    name: season
    domain_of:
    - Agriculture
    - BuiltEnvironment
    - FoodFarmEnvironment
  season_environment:
    name: season_environment
    domain_of:
    - Agriculture
    - PlantAssociated
    recommended: true
  season_humidity:
    name: season_humidity
    domain_of:
    - Agriculture
    - FoodFarmEnvironment
  season_precpt:
    name: season_precpt
    domain_of:
    - Agriculture
    - FoodFarmEnvironment
    - Soil
  season_temp:
    name: season_temp
    domain_of:
    - Agriculture
    - FoodFarmEnvironment
    - Soil
  seq_meth:
    name: seq_meth
    domain_of:
    - Agriculture
    - Checklist
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    required: true
  seq_quality_check:
    name: seq_quality_check
    domain_of:
    - Agriculture
    - Checklist
    - MimarksC
    - MimarksS
  sequencing_location:
    name: sequencing_location
    domain_of:
    - Agriculture
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
  sieving:
    name: sieving
    domain_of:
    - Agriculture
    - Soil
    required: true
  size_frac_low:
    name: size_frac_low
    domain_of:
    - Agriculture
    - FoodFarmEnvironment
    - Water
  size_frac_up:
    name: size_frac_up
    domain_of:
    - Agriculture
    - FoodFarmEnvironment
    - Water
  slope_aspect:
    name: slope_aspect
    domain_of:
    - Agriculture
    - Soil
    recommended: true
  slope_gradient:
    name: slope_gradient
    domain_of:
    - Agriculture
    - Soil
    recommended: true
  soil_conductivity:
    name: soil_conductivity
    domain_of:
    - Agriculture
    - FoodFarmEnvironment
  soil_cover:
    name: soil_cover
    domain_of:
    - Agriculture
    - FoodFarmEnvironment
    recommended: true
  soil_pH:
    name: soil_pH
    domain_of:
    - Agriculture
    - FoodFarmEnvironment
  soil_temp:
    name: soil_temp
    domain_of:
    - Agriculture
    - FoodFarmEnvironment
  soil_type:
    name: soil_type
    domain_of:
    - Agriculture
    - FoodFarmEnvironment
    - Soil
    required: true
  soil_type_meth:
    name: soil_type_meth
    domain_of:
    - Agriculture
    - FoodFarmEnvironment
    - Soil
    required: true
  solar_irradiance:
    name: solar_irradiance
    domain_of:
    - Agriculture
    - Air
    - FoodFarmEnvironment
  sop:
    name: sop
    domain_of:
    - Agriculture
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
  source_mat_id:
    name: source_mat_id
    domain_of:
    - Agriculture
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    - SymbiontAssociated
  specific_host:
    name: specific_host
    domain_of:
    - Agriculture
    - Checklist
    - MigsBa
    - MigsEu
    - MigsPl
    - MigsVi
    - Miuvig
    required: true
  spikein_strain:
    name: spikein_strain
    domain_of:
    - Agriculture
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodHumanFoods
  standing_water_regm:
    name: standing_water_regm
    domain_of:
    - Agriculture
    - PlantAssociated
    recommended: true
  store_cond:
    name: store_cond
    domain_of:
    - Agriculture
    - Soil
    required: true
  target_gene:
    name: target_gene
    domain_of:
    - Agriculture
    - Checklist
    - MimarksC
    - MimarksS
    required: true
  target_subfragment:
    name: target_subfragment
    domain_of:
    - Agriculture
    - Checklist
    - MimarksC
    - MimarksS
    required: true
  temp:
    name: temp
    domain_of:
    - Agriculture
    - Air
    - Checklist
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodHumanFoods
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - MiscellaneousNaturalOrArtificialEnvironment
    - Miuvig
    - PlantAssociated
    - Sediment
    - Soil
    - SymbiontAssociated
    - WastewaterSludge
    - Water
    required: true
  tillage:
    name: tillage
    domain_of:
    - Agriculture
    - FoodFarmEnvironment
    - Soil
    recommended: true
  tot_carb:
    name: tot_carb
    domain_of:
    - Agriculture
    - MicrobialMatBiofilm
    - Sediment
    recommended: true
  tot_org_c_meth:
    name: tot_org_c_meth
    domain_of:
    - Agriculture
    - FoodFarmEnvironment
    - Soil
    recommended: true
  tot_org_carb:
    name: tot_org_carb
    domain_of:
    - Agriculture
    - FoodFarmEnvironment
    - MicrobialMatBiofilm
    - Sediment
    - Soil
    recommended: true
  trophic_level:
    name: trophic_level
    domain_of:
    - Agriculture
    - Checklist
    - MigsBa
    - MigsEu
    - MimarksC
    recommended: true
  water_pH:
    name: water_pH
    domain_of:
    - Agriculture
    - FoodFarmEnvironment
  water_source_shared:
    name: water_source_shared
    domain_of:
    - Agriculture
    - FoodFarmEnvironment
  water_temp_regm:
    name: water_temp_regm
    domain_of:
    - Agriculture
    - PlantAssociated
    recommended: true
  watering_regm:
    name: watering_regm
    domain_of:
    - Agriculture
    - PlantAssociated
    recommended: true
attributes:
  annot:
    name: annot
    description: placeholder description; linter will ignore this
    title: annotation
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000059
    alias: annot
    owner: Agriculture
    domain_of:
    - Agriculture
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - Mims
    - Misag
    - Miuvig
    range: string
    recommended: true
    pattern: '[^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{free_text}'
  biotic_relationship:
    name: biotic_relationship
    description: placeholder description; linter will ignore this
    title: observed biotic relationship
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000028
    alias: biotic_relationship
    owner: Agriculture
    domain_of:
    - Agriculture
    - Checklist
    - MigsBa
    - MigsEu
    - MigsVi
    - MimarksC
    - Miuvig
    range: BIOTIC_RELATIONSHIP_ENUM
    recommended: true
  climate_environment:
    name: climate_environment
    description: placeholder description; linter will ignore this
    title: climate environment
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0001040
    alias: climate_environment
    owner: Agriculture
    domain_of:
    - Agriculture
    - PlantAssociated
    range: string
    recommended: true
  crop_rotation:
    name: crop_rotation
    description: placeholder description; linter will ignore this
    title: history/crop rotation
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000318
    alias: crop_rotation
    owner: Agriculture
    domain_of:
    - Agriculture
    - FoodFarmEnvironment
    - Soil
    range: string
    recommended: true
  cur_vegetation:
    name: cur_vegetation
    description: placeholder description; linter will ignore this
    title: current vegetation
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000312
    alias: cur_vegetation
    owner: Agriculture
    domain_of:
    - Agriculture
    - Soil
    range: string
    recommended: true
    pattern: '[^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{free_text}'
  cur_vegetation_meth:
    name: cur_vegetation_meth
    description: placeholder description; linter will ignore this
    title: current vegetation method
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000314
    alias: cur_vegetation_meth
    owner: Agriculture
    domain_of:
    - Agriculture
    - Soil
    range: string
    recommended: true
    pattern: (10.\d{4,9}/[-._;()/:a-zA-Z0-9]+)|(PMID:(\d{7,8}))|((?:https?://)?(?:www\.)?[\w-]+(?:\.[\w-]+)+[\w.,@?^=%&:/~+#-]*[\w@?^=%&/~+#-])
    structured_pattern:
      syntax: ({DOI})|({PMID})|({URL})
  drainage_class:
    name: drainage_class
    description: placeholder description; linter will ignore this
    title: drainage classification
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0001085
    alias: drainage_class
    owner: Agriculture
    domain_of:
    - Agriculture
    - Soil
    range: DRAINAGE_CLASS_ENUM
    recommended: true
  enrichment_protocol:
    name: enrichment_protocol
    description: placeholder description; linter will ignore this
    title: enrichment protocol
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0001177
    alias: enrichment_protocol
    owner: Agriculture
    domain_of:
    - Agriculture
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    range: string
    recommended: true
    pattern: (10.\d{4,9}/[-._;()/:a-zA-Z0-9]+)|(PMID:(\d{7,8}))|((?:https?://)?(?:www\.)?[\w-]+(?:\.[\w-]+)+[\w.,@?^=%&:/~+#-]*[\w@?^=%&/~+#-])|([^s\|][^\r\n\t\|]*)
    structured_pattern:
      syntax: ({DOI})|({PMID})|({URL})|({free_text})
  extreme_event:
    name: extreme_event
    description: placeholder description; linter will ignore this
    title: history/extreme events
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000320
    alias: extreme_event
    owner: Agriculture
    domain_of:
    - Agriculture
    - Soil
    range: string
    recommended: true
  fao_class:
    name: fao_class
    description: placeholder description; linter will ignore this
    title: soil_taxonomic/FAO classification
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0001083
    alias: fao_class
    owner: Agriculture
    domain_of:
    - Agriculture
    - Soil
    range: FAO_CLASS_ENUM
    recommended: true
  farm_water_source:
    name: farm_water_source
    description: placeholder description; linter will ignore this
    title: farm watering water source
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0001110
    alias: farm_water_source
    owner: Agriculture
    domain_of:
    - Agriculture
    - FoodFarmEnvironment
    range: string
    recommended: true
  fire:
    name: fire
    description: placeholder description; linter will ignore this
    title: history/fire
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0001086
    alias: fire
    owner: Agriculture
    domain_of:
    - Agriculture
    - Soil
    range: string
    recommended: true
  flooding:
    name: flooding
    description: placeholder description; linter will ignore this
    title: history/flooding
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000319
    alias: flooding
    owner: Agriculture
    domain_of:
    - Agriculture
    - Soil
    range: string
    recommended: true
  fungicide_regm:
    name: fungicide_regm
    description: placeholder description; linter will ignore this
    title: fungicide regimen
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000557
    alias: fungicide_regm
    owner: Agriculture
    domain_of:
    - Agriculture
    - PlantAssociated
    range: string
    recommended: true
    pattern: '[^s\|][^\r\n\t\|]*;[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*;R[+-]?[1-9][0-9]*/\d{4}-\d\d-\d\d[Tt]\d\d:\d\d(:\d\d(\.\d+)?([Zz]|[\+\-]\d\d:\d\d)?)?/\d{4}-\d\d-\d\d[Tt]\d\d:\d\d(:\d\d(\.\d+)?([Zz]|[\+\-]\d\d:\d\d)?)?/P(?=\d+[YMWD])(\d+Y)?(\d+M)?(\d+W)?(\d+D)?(T(?=\d+[HMS])(\d+H)?(\d+M)?(\d+S)?)?'
    structured_pattern:
      syntax: '{free_text};{float} {unit};R{integer}/{start_time}/{end_time}/{period}'
  gaseous_environment:
    name: gaseous_environment
    description: placeholder description; linter will ignore this
    title: gaseous environment
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000558
    alias: gaseous_environment
    owner: Agriculture
    domain_of:
    - Agriculture
    - PlantAssociated
    range: string
    recommended: true
    pattern: '[^s\|][^\r\n\t\|]*;[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*;R[+-]?[1-9][0-9]*/\d{4}-\d\d-\d\d[Tt]\d\d:\d\d(:\d\d(\.\d+)?([Zz]|[\+\-]\d\d:\d\d)?)?/\d{4}-\d\d-\d\d[Tt]\d\d:\d\d(:\d\d(\.\d+)?([Zz]|[\+\-]\d\d:\d\d)?)?/P(?=\d+[YMWD])(\d+Y)?(\d+M)?(\d+W)?(\d+D)?(T(?=\d+[HMS])(\d+H)?(\d+M)?(\d+S)?)?'
    structured_pattern:
      syntax: '{free_text};{float} {unit};R{integer}/{start_time}/{end_time}/{period}'
  heavy_metals_meth:
    name: heavy_metals_meth
    description: placeholder description; linter will ignore this
    title: extreme_unusual_properties/heavy metals method
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000343
    alias: heavy_metals_meth
    owner: Agriculture
    domain_of:
    - Agriculture
    - Soil
    range: string
    recommended: true
    pattern: (10.\d{4,9}/[-._;()/:a-zA-Z0-9]+)|(PMID:(\d{7,8}))|((?:https?://)?(?:www\.)?[\w-]+(?:\.[\w-]+)+[\w.,@?^=%&:/~+#-]*[\w@?^=%&/~+#-])
    structured_pattern:
      syntax: ({DOI})|({PMID})|({URL})
  herbicide_regm:
    name: herbicide_regm
    description: placeholder description; linter will ignore this
    title: herbicide regimen
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000561
    alias: herbicide_regm
    owner: Agriculture
    domain_of:
    - Agriculture
    - PlantAssociated
    range: string
    recommended: true
    pattern: '[^s\|][^\r\n\t\|]*;[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*;R[+-]?[1-9][0-9]*/\d{4}-\d\d-\d\d[Tt]\d\d:\d\d(:\d\d(\.\d+)?([Zz]|[\+\-]\d\d:\d\d)?)?/\d{4}-\d\d-\d\d[Tt]\d\d:\d\d(:\d\d(\.\d+)?([Zz]|[\+\-]\d\d:\d\d)?)?/P(?=\d+[YMWD])(\d+Y)?(\d+M)?(\d+W)?(\d+D)?(T(?=\d+[HMS])(\d+H)?(\d+M)?(\d+S)?)?'
    structured_pattern:
      syntax: '{free_text};{float} {unit};R{integer}/{start_time}/{end_time}/{period}'
  horizon_meth:
    name: horizon_meth
    description: placeholder description; linter will ignore this
    title: horizon method
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000321
    alias: horizon_meth
    owner: Agriculture
    domain_of:
    - Agriculture
    - Soil
    range: string
    recommended: true
    pattern: (10.\d{4,9}/[-._;()/:a-zA-Z0-9]+)|(PMID:(\d{7,8}))|((?:https?://)?(?:www\.)?[\w-]+(?:\.[\w-]+)+[\w.,@?^=%&:/~+#-]*[\w@?^=%&/~+#-])
    structured_pattern:
      syntax: ({DOI})|({PMID})|({URL})
  host_disease_stat:
    name: host_disease_stat
    description: placeholder description; linter will ignore this
    title: host disease status
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000031
    alias: host_disease_stat
    owner: Agriculture
    domain_of:
    - Agriculture
    - Checklist
    - FoodFarmEnvironment
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - MigsBa
    - MigsEu
    - MigsVi
    - Miuvig
    - PlantAssociated
    range: string
    recommended: true
    pattern: ((([^s\|][^\r\n\t\|]* [[a-zA-Z]+:[0-9]+])|[^s\|][^\r\n\t\|]*)\|)*(([^s\|][^\r\n\t\|]*
      [[a-zA-Z]+:[0-9]+])|[^s\|][^\r\n\t\|]*)
    structured_pattern:
      syntax: ((({term_label} [{term_id}])|{free_text})\|)*(({term_label} [{term_id}])|{free_text})
  humidity:
    name: humidity
    description: placeholder description; linter will ignore this
    title: humidity
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000100
    alias: humidity
    owner: Agriculture
    domain_of:
    - Agriculture
    - Air
    - FoodFarmEnvironment
    range: string
    recommended: true
    pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{float} {unit}'
  lib_layout:
    name: lib_layout
    description: placeholder description; linter will ignore this
    title: library layout
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000041
    alias: lib_layout
    owner: Agriculture
    domain_of:
    - Agriculture
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    range: LIB_LAYOUT_ENUM
    recommended: true
  local_class:
    name: local_class
    description: placeholder description; linter will ignore this
    title: soil_taxonomic/local classification
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000330
    alias: local_class
    owner: Agriculture
    domain_of:
    - Agriculture
    - Soil
    range: string
    recommended: true
    pattern: '[^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{free_text}'
  local_class_meth:
    name: local_class_meth
    description: placeholder description; linter will ignore this
    title: soil_taxonomic/local classification method
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000331
    alias: local_class_meth
    owner: Agriculture
    domain_of:
    - Agriculture
    - Soil
    range: string
    recommended: true
    pattern: (10.\d{4,9}/[-._;()/:a-zA-Z0-9]+)|(PMID:(\d{7,8}))|((?:https?://)?(?:www\.)?[\w-]+(?:\.[\w-]+)+[\w.,@?^=%&:/~+#-]*[\w@?^=%&/~+#-])
    structured_pattern:
      syntax: ({DOI})|({PMID})|({URL})
  non_mineral_nutr_regm:
    name: non_mineral_nutr_regm
    description: placeholder description; linter will ignore this
    title: non-mineral nutrient regimen
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000571
    alias: non_mineral_nutr_regm
    owner: Agriculture
    domain_of:
    - Agriculture
    - PlantAssociated
    range: string
    recommended: true
    pattern: '[^s\|][^\r\n\t\|]*;[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*;R[+-]?[1-9][0-9]*/\d{4}-\d\d-\d\d[Tt]\d\d:\d\d(:\d\d(\.\d+)?([Zz]|[\+\-]\d\d:\d\d)?)?/\d{4}-\d\d-\d\d[Tt]\d\d:\d\d(:\d\d(\.\d+)?([Zz]|[\+\-]\d\d:\d\d)?)?/P(?=\d+[YMWD])(\d+Y)?(\d+M)?(\d+W)?(\d+D)?(T(?=\d+[HMS])(\d+H)?(\d+M)?(\d+S)?)?'
    structured_pattern:
      syntax: '{free_text};{float} {unit};R{integer}/{start_time}/{end_time}/{period}'
  organism_count:
    name: organism_count
    description: placeholder description; linter will ignore this
    title: organism count
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000103
    alias: organism_count
    owner: Agriculture
    domain_of:
    - Agriculture
    - Air
    - BuiltEnvironment
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - PlantAssociated
    - Sediment
    - SymbiontAssociated
    - WastewaterSludge
    - Water
    range: string
    recommended: true
  oxy_stat_samp:
    name: oxy_stat_samp
    description: placeholder description; linter will ignore this
    title: oxygenation status of sample
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000753
    alias: oxy_stat_samp
    owner: Agriculture
    domain_of:
    - Agriculture
    - Air
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - PlantAssociated
    - Sediment
    - SymbiontAssociated
    - WastewaterSludge
    - Water
    range: OXY_STAT_SAMP_ENUM
    recommended: true
  perturbation:
    name: perturbation
    description: placeholder description; linter will ignore this
    title: perturbation
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000754
    alias: perturbation
    owner: Agriculture
    domain_of:
    - Agriculture
    - Air
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodHumanFoods
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - PlantAssociated
    - Sediment
    - SymbiontAssociated
    - WastewaterSludge
    - Water
    range: string
    recommended: true
  pesticide_regm:
    name: pesticide_regm
    description: placeholder description; linter will ignore this
    title: pesticide regimen
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000573
    alias: pesticide_regm
    owner: Agriculture
    domain_of:
    - Agriculture
    - PlantAssociated
    range: string
    recommended: true
    pattern: '[^s\|][^\r\n\t\|]*;[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*;R[+-]?[1-9][0-9]*/\d{4}-\d\d-\d\d[Tt]\d\d:\d\d(:\d\d(\.\d+)?([Zz]|[\+\-]\d\d:\d\d)?)?/\d{4}-\d\d-\d\d[Tt]\d\d:\d\d(:\d\d(\.\d+)?([Zz]|[\+\-]\d\d:\d\d)?)?/P(?=\d+[YMWD])(\d+Y)?(\d+M)?(\d+W)?(\d+D)?(T(?=\d+[HMS])(\d+H)?(\d+M)?(\d+S)?)?'
    structured_pattern:
      syntax: '{free_text};{float} {unit};R{integer}/{start_time}/{end_time}/{period}'
  ph_meth:
    name: ph_meth
    description: placeholder description; linter will ignore this
    title: pH method
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0001106
    alias: ph_meth
    owner: Agriculture
    domain_of:
    - Agriculture
    - FoodFarmEnvironment
    - Soil
    range: string
    recommended: true
    pattern: (10.\d{4,9}/[-._;()/:a-zA-Z0-9]+)|(PMID:(\d{7,8}))|((?:https?://)?(?:www\.)?[\w-]+(?:\.[\w-]+)+[\w.,@?^=%&:/~+#-]*[\w@?^=%&/~+#-])
    structured_pattern:
      syntax: ({DOI})|({PMID})|({URL})
  ph_regm:
    name: ph_regm
    description: placeholder description; linter will ignore this
    title: pH regimen
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0001056
    alias: ph_regm
    owner: Agriculture
    domain_of:
    - Agriculture
    - PlantAssociated
    range: string
    recommended: true
  photosynt_activ:
    name: photosynt_activ
    description: placeholder description; linter will ignore this
    title: photosynthetic activity
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0001296
    alias: photosynt_activ
    owner: Agriculture
    domain_of:
    - Agriculture
    range: string
    recommended: true
    pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{float} {unit}'
  photosynt_activ_meth:
    name: photosynt_activ_meth
    description: placeholder description; linter will ignore this
    title: photosynthetic activity method
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0001336
    alias: photosynt_activ_meth
    owner: Agriculture
    domain_of:
    - Agriculture
    range: string
    recommended: true
    pattern: (10.\d{4,9}/[-._;()/:a-zA-Z0-9]+)|(PMID:(\d{7,8}))|((?:https?://)?(?:www\.)?[\w-]+(?:\.[\w-]+)+[\w.,@?^=%&:/~+#-]*[\w@?^=%&/~+#-])|([^s\|][^\r\n\t\|]*)
    structured_pattern:
      syntax: ({DOI})|({PMID})|({URL})|({free_text})
  plant_product:
    name: plant_product
    description: placeholder description; linter will ignore this
    title: plant product
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0001058
    alias: plant_product
    owner: Agriculture
    domain_of:
    - Agriculture
    - PlantAssociated
    range: string
    recommended: true
    pattern: '[^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{free_text}'
  plant_struc:
    name: plant_struc
    description: placeholder description; linter will ignore this
    title: plant structure
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0001060
    alias: plant_struc
    owner: Agriculture
    domain_of:
    - Agriculture
    - PlantAssociated
    range: string
    recommended: true
    pattern: '[^s\|][^\r\n\t\|]* [[a-zA-Z]+:[0-9]+]'
    structured_pattern:
      syntax: '{term_label} [{term_id}]'
  plant_water_method:
    name: plant_water_method
    description: placeholder description; linter will ignore this
    title: plant water delivery method
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0001111
    alias: plant_water_method
    owner: Agriculture
    domain_of:
    - Agriculture
    - FoodFarmEnvironment
    range: string
    recommended: true
    pattern: '[^s\|][^\r\n\t\|]* [[a-zA-Z]+:[0-9]+]'
    structured_pattern:
      syntax: '{term_label} [{term_id}]'
  previous_land_use:
    name: previous_land_use
    description: placeholder description; linter will ignore this
    title: history/previous land use
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000315
    alias: previous_land_use
    owner: Agriculture
    domain_of:
    - Agriculture
    - FoodFarmEnvironment
    - Soil
    range: string
    recommended: true
  previous_land_use_meth:
    name: previous_land_use_meth
    description: placeholder description; linter will ignore this
    title: history/previous land use method
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000316
    alias: previous_land_use_meth
    owner: Agriculture
    domain_of:
    - Agriculture
    - Soil
    range: string
    recommended: true
    pattern: (10.\d{4,9}/[-._;()/:a-zA-Z0-9]+)|(PMID:(\d{7,8}))|((?:https?://)?(?:www\.)?[\w-]+(?:\.[\w-]+)+[\w.,@?^=%&:/~+#-]*[\w@?^=%&/~+#-])
    structured_pattern:
      syntax: ({DOI})|({PMID})|({URL})
  profile_position:
    name: profile_position
    description: placeholder description; linter will ignore this
    title: profile position
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0001084
    alias: profile_position
    owner: Agriculture
    domain_of:
    - Agriculture
    - Soil
    range: PROFILE_POSITION_ENUM
    recommended: true
  rel_location:
    name: rel_location
    description: placeholder description; linter will ignore this
    title: relative location of sample
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0001161
    alias: rel_location
    owner: Agriculture
    domain_of:
    - Agriculture
    - FoodFarmEnvironment
    range: string
    recommended: true
    pattern: '[^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{free_text}'
  salt_regm:
    name: salt_regm
    description: placeholder description; linter will ignore this
    title: salt regimen
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000582
    alias: salt_regm
    owner: Agriculture
    domain_of:
    - Agriculture
    - PlantAssociated
    range: string
    recommended: true
    pattern: '[^s\|][^\r\n\t\|]*;[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*;R[+-]?[1-9][0-9]*/\d{4}-\d\d-\d\d[Tt]\d\d:\d\d(:\d\d(\.\d+)?([Zz]|[\+\-]\d\d:\d\d)?)?/\d{4}-\d\d-\d\d[Tt]\d\d:\d\d(:\d\d(\.\d+)?([Zz]|[\+\-]\d\d:\d\d)?)?/P(?=\d+[YMWD])(\d+Y)?(\d+M)?(\d+W)?(\d+D)?(T(?=\d+[HMS])(\d+H)?(\d+M)?(\d+S)?)?'
    structured_pattern:
      syntax: '{free_text};{float} {unit};R{integer}/{start_time}/{end_time}/{period}'
  samp_pooling:
    name: samp_pooling
    description: placeholder description; linter will ignore this
    title: sample pooling
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0001153
    alias: samp_pooling
    owner: Agriculture
    domain_of:
    - Agriculture
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    range: string
    recommended: true
    pattern: '[^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{free_text}'
  season_environment:
    name: season_environment
    description: placeholder description; linter will ignore this
    title: seasonal environment
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0001068
    alias: season_environment
    owner: Agriculture
    domain_of:
    - Agriculture
    - PlantAssociated
    range: string
    recommended: true
  slope_aspect:
    name: slope_aspect
    description: placeholder description; linter will ignore this
    title: slope aspect
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000647
    alias: slope_aspect
    owner: Agriculture
    domain_of:
    - Agriculture
    - Soil
    range: string
    recommended: true
    pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{float} {unit}'
  slope_gradient:
    name: slope_gradient
    description: placeholder description; linter will ignore this
    title: slope gradient
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000646
    alias: slope_gradient
    owner: Agriculture
    domain_of:
    - Agriculture
    - Soil
    range: string
    recommended: true
    pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{float} {unit}'
  soil_cover:
    name: soil_cover
    description: placeholder description; linter will ignore this
    title: soil cover
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0001159
    alias: soil_cover
    owner: Agriculture
    domain_of:
    - Agriculture
    - FoodFarmEnvironment
    range: string
    recommended: true
    pattern: '[^s\|][^\r\n\t\|]* [[a-zA-Z]+:[0-9]+]'
    structured_pattern:
      syntax: '{term_label} [{term_id}]'
  standing_water_regm:
    name: standing_water_regm
    description: placeholder description; linter will ignore this
    title: standing water regimen
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0001069
    alias: standing_water_regm
    owner: Agriculture
    domain_of:
    - Agriculture
    - PlantAssociated
    range: string
    recommended: true
  tillage:
    name: tillage
    description: placeholder description; linter will ignore this
    title: history/tillage
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0001081
    multivalued: true
    alias: tillage
    owner: Agriculture
    domain_of:
    - Agriculture
    - FoodFarmEnvironment
    - Soil
    range: TILLAGE_ENUM
    recommended: true
  tot_carb:
    name: tot_carb
    description: placeholder description; linter will ignore this
    title: total carbon
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000525
    alias: tot_carb
    owner: Agriculture
    domain_of:
    - Agriculture
    - MicrobialMatBiofilm
    - Sediment
    range: string
    recommended: true
    pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{float} {unit}'
  tot_org_c_meth:
    name: tot_org_c_meth
    description: placeholder description; linter will ignore this
    title: total organic carbon method
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000337
    alias: tot_org_c_meth
    owner: Agriculture
    domain_of:
    - Agriculture
    - FoodFarmEnvironment
    - Soil
    range: string
    recommended: true
    pattern: (10.\d{4,9}/[-._;()/:a-zA-Z0-9]+)|(PMID:(\d{7,8}))|((?:https?://)?(?:www\.)?[\w-]+(?:\.[\w-]+)+[\w.,@?^=%&:/~+#-]*[\w@?^=%&/~+#-])
    structured_pattern:
      syntax: ({DOI})|({PMID})|({URL})
  tot_org_carb:
    name: tot_org_carb
    description: placeholder description; linter will ignore this
    title: total organic carbon
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000533
    alias: tot_org_carb
    owner: Agriculture
    domain_of:
    - Agriculture
    - FoodFarmEnvironment
    - MicrobialMatBiofilm
    - Sediment
    - Soil
    range: string
    recommended: true
  trophic_level:
    name: trophic_level
    description: placeholder description; linter will ignore this
    title: trophic level
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000032
    alias: trophic_level
    owner: Agriculture
    domain_of:
    - Agriculture
    - Checklist
    - MigsBa
    - MigsEu
    - MimarksC
    range: TROPHIC_LEVEL_ENUM
    recommended: true
  water_temp_regm:
    name: water_temp_regm
    description: placeholder description; linter will ignore this
    title: water temperature regimen
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000590
    alias: water_temp_regm
    owner: Agriculture
    domain_of:
    - Agriculture
    - PlantAssociated
    range: string
    recommended: true
  watering_regm:
    name: watering_regm
    description: placeholder description; linter will ignore this
    title: watering regimen
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000591
    alias: watering_regm
    owner: Agriculture
    domain_of:
    - Agriculture
    - PlantAssociated
    range: string
    recommended: true
  adjacent_environment:
    name: adjacent_environment
    description: placeholder description; linter will ignore this
    title: environment adjacent to site
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0001121
    alias: adjacent_environment
    owner: Agriculture
    domain_of:
    - Agriculture
    - FoodFarmEnvironment
    range: string
  agrochem_addition:
    name: agrochem_addition
    description: placeholder description; linter will ignore this
    title: history/agrochemical additions
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000639
    alias: agrochem_addition
    owner: Agriculture
    domain_of:
    - Agriculture
    - Soil
    range: string
  ances_data:
    name: ances_data
    description: placeholder description; linter will ignore this
    title: ancestral data
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000247
    alias: ances_data
    owner: Agriculture
    domain_of:
    - Agriculture
    - FoodFarmEnvironment
    - HostAssociated
    - PlantAssociated
    range: string
    pattern: '[^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{free_text}'
  anim_water_method:
    name: anim_water_method
    description: placeholder description; linter will ignore this
    title: animal water delivery method
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0001115
    alias: anim_water_method
    owner: Agriculture
    domain_of:
    - Agriculture
    - FoodFarmEnvironment
    range: string
    pattern: '[^s\|][^\r\n\t\|]* [[a-zA-Z]+:[0-9]+]'
    structured_pattern:
      syntax: '{term_label} [{term_id}]'
  annual_precpt:
    name: annual_precpt
    description: placeholder description; linter will ignore this
    title: mean annual precipitation
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000644
    alias: annual_precpt
    owner: Agriculture
    domain_of:
    - Agriculture
    - Soil
    range: string
    pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{float} {unit}'
  annual_temp:
    name: annual_temp
    description: placeholder description; linter will ignore this
    title: mean annual temperature
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000642
    alias: annual_temp
    owner: Agriculture
    domain_of:
    - Agriculture
    - Soil
    range: string
    pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{float} {unit}'
  crop_yield:
    name: crop_yield
    description: placeholder description; linter will ignore this
    title: crop yield
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0001116
    alias: crop_yield
    owner: Agriculture
    domain_of:
    - Agriculture
    - FoodFarmEnvironment
    range: string
    pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{float} {unit}'
  cult_isol_date:
    name: cult_isol_date
    description: placeholder description; linter will ignore this
    title: culture isolation date
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0001181
    alias: cult_isol_date
    owner: Agriculture
    domain_of:
    - Agriculture
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    range: string
  cur_land_use:
    name: cur_land_use
    description: placeholder description; linter will ignore this
    title: current land use
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0001080
    alias: cur_land_use
    owner: Agriculture
    domain_of:
    - Agriculture
    - Soil
    range: CUR_LAND_USE_ENUM
  elev:
    name: elev
    description: placeholder description; linter will ignore this
    title: elevation
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000093
    alias: elev
    owner: Agriculture
    domain_of:
    - Agriculture
    - Air
    - Checklist
    - HostAssociated
    - HydrocarbonResourcesCores
    - MicrobialMatBiofilm
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - MiscellaneousNaturalOrArtificialEnvironment
    - Miuvig
    - PlantAssociated
    - Sediment
    - Soil
    - SymbiontAssociated
    - Water
    range: string
    pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{float} {unit}'
  farm_equip:
    name: farm_equip
    description: placeholder description; linter will ignore this
    title: farm equipment used
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0001126
    alias: farm_equip
    owner: Agriculture
    domain_of:
    - Agriculture
    - FoodFarmEnvironment
    range: string
    pattern: '[^s\|][^\r\n\t\|]* [[a-zA-Z]+:[0-9]+]'
    structured_pattern:
      syntax: '{term_label} [{term_id}]'
  farm_equip_san:
    name: farm_equip_san
    description: placeholder description; linter will ignore this
    title: farm equipment sanitization
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0001124
    alias: farm_equip_san
    owner: Agriculture
    domain_of:
    - Agriculture
    - FoodFarmEnvironment
    range: string
  farm_equip_shared:
    name: farm_equip_shared
    description: placeholder description; linter will ignore this
    title: equipment shared with other farms
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0001123
    alias: farm_equip_shared
    owner: Agriculture
    domain_of:
    - Agriculture
    - FoodFarmEnvironment
    range: string
    pattern: '[^s\|][^\r\n\t\|]* [[a-zA-Z]+:[0-9]+]'
    structured_pattern:
      syntax: '{term_label} [{term_id}]'
  fertilizer_admin:
    name: fertilizer_admin
    description: placeholder description; linter will ignore this
    title: fertilizer administration
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0001127
    alias: fertilizer_admin
    owner: Agriculture
    domain_of:
    - Agriculture
    - FoodFarmEnvironment
    range: string
    pattern: '[^s\|][^\r\n\t\|]* [[a-zA-Z]+:[0-9]+]'
    structured_pattern:
      syntax: '{term_label} [{term_id}]'
  food_harvest_proc:
    name: food_harvest_proc
    description: placeholder description; linter will ignore this
    title: Food harvesting process
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0001133
    alias: food_harvest_proc
    owner: Agriculture
    domain_of:
    - Agriculture
    - FoodFarmEnvironment
    range: string
    pattern: '[^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{free_text}'
  food_prod:
    name: food_prod
    description: placeholder description; linter will ignore this
    title: food production system characteristics
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0001211
    alias: food_prod
    owner: Agriculture
    domain_of:
    - Agriculture
    - FoodAnimalAndAnimalFeed
    - FoodFoodProductionFacility
    - FoodHumanFoods
    range: string
    pattern: '[^s\|][^\r\n\t\|]* [[a-zA-Z]+:[0-9]+]'
    structured_pattern:
      syntax: '{term_label} [{term_id}]'
  food_product_type:
    name: food_product_type
    description: placeholder description; linter will ignore this
    title: food product type
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0001184
    alias: food_product_type
    owner: Agriculture
    domain_of:
    - Agriculture
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    range: string
  food_trav_mode:
    name: food_trav_mode
    description: placeholder description; linter will ignore this
    title: food shipping transportation method
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0001137
    alias: food_trav_mode
    owner: Agriculture
    domain_of:
    - Agriculture
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    range: string
    pattern: '[^s\|][^\r\n\t\|]* [[a-zA-Z]+:[0-9]+]'
    structured_pattern:
      syntax: '{term_label} [{term_id}]'
  food_trav_vehic:
    name: food_trav_vehic
    description: placeholder description; linter will ignore this
    title: food shipping transportation vehicle
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0001138
    alias: food_trav_vehic
    owner: Agriculture
    domain_of:
    - Agriculture
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    range: string
  genetic_mod:
    name: genetic_mod
    description: placeholder description; linter will ignore this
    title: genetic modification
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000859
    alias: genetic_mod
    owner: Agriculture
    domain_of:
    - Agriculture
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - HostAssociated
    - PlantAssociated
    range: string
    pattern: (10.\d{4,9}/[-._;()/:a-zA-Z0-9]+)|(PMID:(\d{7,8}))|((?:https?://)?(?:www\.)?[\w-]+(?:\.[\w-]+)+[\w.,@?^=%&:/~+#-]*[\w@?^=%&/~+#-])|([^s\|][^\r\n\t\|]*)
    structured_pattern:
      syntax: ({DOI})|({PMID})|({URL})|({free_text})
  host_dry_mass:
    name: host_dry_mass
    description: placeholder description; linter will ignore this
    title: host dry mass
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000257
    alias: host_dry_mass
    owner: Agriculture
    domain_of:
    - Agriculture
    - FoodFarmEnvironment
    - HostAssociated
    - PlantAssociated
    - SymbiontAssociated
    range: string
    pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{float} {unit}'
  host_subspecf_genlin:
    name: host_subspecf_genlin
    description: placeholder description; linter will ignore this
    title: host subspecific genetic lineage
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0001318
    alias: host_subspecf_genlin
    owner: Agriculture
    domain_of:
    - Agriculture
    - FoodFarmEnvironment
    - HostAssociated
    - PlantAssociated
    range: string
  isol_growth_condt:
    name: isol_growth_condt
    description: placeholder description; linter will ignore this
    title: isolation and growth condition
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000003
    alias: isol_growth_condt
    owner: Agriculture
    domain_of:
    - Agriculture
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - MimarksC
    range: string
    pattern: (10.\d{4,9}/[-._;()/:a-zA-Z0-9]+)|(PMID:(\d{7,8}))|((?:https?://)?(?:www\.)?[\w-]+(?:\.[\w-]+)+[\w.,@?^=%&:/~+#-]*[\w@?^=%&/~+#-])
    structured_pattern:
      syntax: ({DOI})|({PMID})|({URL})
  lib_size:
    name: lib_size
    description: placeholder description; linter will ignore this
    title: library size
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000039
    alias: lib_size
    owner: Agriculture
    domain_of:
    - Agriculture
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    range: integer
  library_prep_kit:
    name: library_prep_kit
    description: placeholder description; linter will ignore this
    title: library preparation kit
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0001145
    alias: library_prep_kit
    owner: Agriculture
    domain_of:
    - Agriculture
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    range: string
    pattern: '[^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{free_text}'
  link_class_info:
    name: link_class_info
    description: placeholder description; linter will ignore this
    title: link to classification information
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000329
    alias: link_class_info
    owner: Agriculture
    domain_of:
    - Agriculture
    - Soil
    range: string
    pattern: (10.\d{4,9}/[-._;()/:a-zA-Z0-9]+)|(PMID:(\d{7,8}))|((?:https?://)?(?:www\.)?[\w-]+(?:\.[\w-]+)+[\w.,@?^=%&:/~+#-]*[\w@?^=%&/~+#-])
    structured_pattern:
      syntax: ({DOI})|({PMID})|({URL})
  link_climate_info:
    name: link_climate_info
    description: placeholder description; linter will ignore this
    title: link to climate information
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000328
    alias: link_climate_info
    owner: Agriculture
    domain_of:
    - Agriculture
    - Soil
    range: string
    pattern: (10.\d{4,9}/[-._;()/:a-zA-Z0-9]+)|(PMID:(\d{7,8}))|((?:https?://)?(?:www\.)?[\w-]+(?:\.[\w-]+)+[\w.,@?^=%&:/~+#-]*[\w@?^=%&/~+#-])
    structured_pattern:
      syntax: ({DOI})|({PMID})|({URL})
  lot_number:
    name: lot_number
    description: placeholder description; linter will ignore this
    title: lot number
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0001147
    alias: lot_number
    owner: Agriculture
    domain_of:
    - Agriculture
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    range: string
  misc_param:
    name: misc_param
    description: placeholder description; linter will ignore this
    title: miscellaneous parameter
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000752
    alias: misc_param
    owner: Agriculture
    domain_of:
    - Agriculture
    - Air
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - PlantAssociated
    - Sediment
    - Soil
    - SymbiontAssociated
    - WastewaterSludge
    - Water
    range: string
    pattern: (([^s\|][^\r\n\t\|]*;[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*)\\|)*([^s\|][^\r\n\t\|]*;[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)?
      [^s\|][^\r\n\t\|]*)
    structured_pattern:
      syntax: (({free_text};{float} {unit})\\|)*({free_text};{float} {unit})
  plant_growth_med:
    name: plant_growth_med
    description: placeholder description; linter will ignore this
    title: plant growth medium
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0001057
    alias: plant_growth_med
    owner: Agriculture
    domain_of:
    - Agriculture
    - FoodFarmEnvironment
    - PlantAssociated
    range: string
  porosity:
    name: porosity
    description: placeholder description; linter will ignore this
    title: porosity
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000211
    alias: porosity
    owner: Agriculture
    domain_of:
    - Agriculture
    - HydrocarbonResourcesCores
    - Sediment
    range: string
  pres_animal_insect:
    name: pres_animal_insect
    description: placeholder description; linter will ignore this
    title: presence of pets, animals, or insects
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000819
    alias: pres_animal_insect
    owner: Agriculture
    domain_of:
    - Agriculture
    - BuiltEnvironment
    range: string
  root_med_carbon:
    name: root_med_carbon
    description: placeholder description; linter will ignore this
    title: rooting medium carbon
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000577
    alias: root_med_carbon
    owner: Agriculture
    domain_of:
    - Agriculture
    - FoodFarmEnvironment
    - PlantAssociated
    range: string
  root_med_macronutr:
    name: root_med_macronutr
    description: placeholder description; linter will ignore this
    title: rooting medium macronutrients
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000578
    alias: root_med_macronutr
    owner: Agriculture
    domain_of:
    - Agriculture
    - FoodFarmEnvironment
    - PlantAssociated
    range: string
    pattern: '[^s\|][^\r\n\t\|]*;[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{free_text};{float} {unit}'
  root_med_ph:
    name: root_med_ph
    description: placeholder description; linter will ignore this
    title: rooting medium pH
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0001062
    alias: root_med_ph
    owner: Agriculture
    domain_of:
    - Agriculture
    - FoodFarmEnvironment
    - PlantAssociated
    range: float
  samp_store_temp:
    name: samp_store_temp
    description: placeholder description; linter will ignore this
    title: sample storage temperature
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000110
    alias: samp_store_temp
    owner: Agriculture
    domain_of:
    - Agriculture
    - Air
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - PlantAssociated
    - Sediment
    - SymbiontAssociated
    - WastewaterSludge
    - Water
    range: string
    pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{float} {unit}'
  season:
    name: season
    description: placeholder description; linter will ignore this
    title: season
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000829
    alias: season
    owner: Agriculture
    domain_of:
    - Agriculture
    - BuiltEnvironment
    - FoodFarmEnvironment
    range: string
    pattern: '[^s\|][^\r\n\t\|]* [[a-zA-Z]+:[0-9]+]'
    structured_pattern:
      syntax: '{term_label} [{term_id}]'
  season_humidity:
    name: season_humidity
    description: placeholder description; linter will ignore this
    title: mean seasonal humidity
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0001148
    alias: season_humidity
    owner: Agriculture
    domain_of:
    - Agriculture
    - FoodFarmEnvironment
    range: string
    pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{float} {unit}'
  season_precpt:
    name: season_precpt
    description: placeholder description; linter will ignore this
    title: mean seasonal precipitation
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000645
    alias: season_precpt
    owner: Agriculture
    domain_of:
    - Agriculture
    - FoodFarmEnvironment
    - Soil
    range: string
    pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{float} {unit}'
  season_temp:
    name: season_temp
    description: placeholder description; linter will ignore this
    title: mean seasonal temperature
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000643
    alias: season_temp
    owner: Agriculture
    domain_of:
    - Agriculture
    - FoodFarmEnvironment
    - Soil
    range: string
    pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{float} {unit}'
  seq_quality_check:
    name: seq_quality_check
    description: placeholder description; linter will ignore this
    title: sequence quality check
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000051
    alias: seq_quality_check
    owner: Agriculture
    domain_of:
    - Agriculture
    - Checklist
    - MimarksC
    - MimarksS
    range: string
  sequencing_location:
    name: sequencing_location
    description: placeholder description; linter will ignore this
    title: sequencing location
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0001156
    alias: sequencing_location
    owner: Agriculture
    domain_of:
    - Agriculture
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    range: string
    pattern: '[^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{free_text}'
  size_frac_low:
    name: size_frac_low
    description: placeholder description; linter will ignore this
    title: size-fraction lower threshold
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000735
    alias: size_frac_low
    owner: Agriculture
    domain_of:
    - Agriculture
    - FoodFarmEnvironment
    - Water
    range: string
    pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{float} {unit}'
  size_frac_up:
    name: size_frac_up
    description: placeholder description; linter will ignore this
    title: size-fraction upper threshold
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000736
    alias: size_frac_up
    owner: Agriculture
    domain_of:
    - Agriculture
    - FoodFarmEnvironment
    - Water
    range: string
    pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{float} {unit}'
  soil_conductivity:
    name: soil_conductivity
    description: placeholder description; linter will ignore this
    title: soil conductivity
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0001158
    alias: soil_conductivity
    owner: Agriculture
    domain_of:
    - Agriculture
    - FoodFarmEnvironment
    range: string
    pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{float} {unit}'
  soil_pH:
    name: soil_pH
    description: placeholder description; linter will ignore this
    title: soil pH
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0001160
    alias: soil_pH
    owner: Agriculture
    domain_of:
    - Agriculture
    - FoodFarmEnvironment
    range: float
  soil_temp:
    name: soil_temp
    description: placeholder description; linter will ignore this
    title: soil temperature
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0001163
    alias: soil_temp
    owner: Agriculture
    domain_of:
    - Agriculture
    - FoodFarmEnvironment
    range: string
    pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{float} {unit}'
  solar_irradiance:
    name: solar_irradiance
    description: placeholder description; linter will ignore this
    title: solar irradiance
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000112
    alias: solar_irradiance
    owner: Agriculture
    domain_of:
    - Agriculture
    - Air
    - FoodFarmEnvironment
    range: string
    pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{float} {unit}'
  sop:
    name: sop
    description: placeholder description; linter will ignore this
    title: relevant standard operating procedures
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000090
    alias: sop
    owner: Agriculture
    domain_of:
    - Agriculture
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    range: string
    pattern: (((10.\d{4,9}/[-._;()/:a-zA-Z0-9]+)|(PMID:(\d{7,8}))|((?:https?://)?(?:www\.)?[\w-]+(?:\.[\w-]+)+[\w.,@?^=%&:/~+#-]*[\w@?^=%&/~+#-]))\|)*(((10.\d{4,9}/[-._;()/:a-zA-Z0-9]+)|(PMID:(\d{7,8}))|((?:https?://)?(?:www\.)?[\w-]+(?:\.[\w-]+)+[\w.,@?^=%&:/~+#-]*[\w@?^=%&/~+#-])))
    structured_pattern:
      syntax: ((({DOI})|({PMID})|({URL}))\|)*((({DOI})|({PMID})|({URL})))
  source_mat_id:
    name: source_mat_id
    description: placeholder description; linter will ignore this
    title: source material identifiers
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000026
    alias: source_mat_id
    owner: Agriculture
    domain_of:
    - Agriculture
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    - SymbiontAssociated
    range: string
    pattern: '[^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{free_text}'
  spikein_strain:
    name: spikein_strain
    description: placeholder description; linter will ignore this
    title: spike-in microbial strain
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0001170
    alias: spikein_strain
    owner: Agriculture
    domain_of:
    - Agriculture
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodHumanFoods
    range: string
  water_pH:
    name: water_pH
    description: placeholder description; linter will ignore this
    title: water pH
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0001175
    alias: water_pH
    owner: Agriculture
    domain_of:
    - Agriculture
    - FoodFarmEnvironment
    range: float
  water_source_shared:
    name: water_source_shared
    description: placeholder description; linter will ignore this
    title: water source shared
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0001176
    alias: water_source_shared
    owner: Agriculture
    domain_of:
    - Agriculture
    - FoodFarmEnvironment
    range: string
  adapters:
    name: adapters
    description: placeholder description; linter will ignore this
    title: adapters
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000048
    alias: adapters
    owner: Agriculture
    domain_of:
    - Agriculture
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    range: string
    required: true
    pattern: '[ACGT]+;[ACGT]+'
    structured_pattern:
      syntax: '{dna};{dna}'
  assembly_name:
    name: assembly_name
    description: placeholder description; linter will ignore this
    title: assembly name
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000057
    alias: assembly_name
    owner: Agriculture
    domain_of:
    - Agriculture
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - Mims
    - Misag
    - Miuvig
    range: string
    required: true
    pattern: '[^s\|][^\r\n\t\|]* [^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{free_text} {free_text}'
  chem_administration:
    name: chem_administration
    description: placeholder description; linter will ignore this
    title: chemical administration
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000751
    alias: chem_administration
    owner: Agriculture
    domain_of:
    - Agriculture
    - Air
    - FoodFarmEnvironment
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - PlantAssociated
    - Sediment
    - SymbiontAssociated
    - WastewaterSludge
    - Water
    range: string
    required: true
  chimera_check:
    name: chimera_check
    description: placeholder description; linter will ignore this
    title: chimera check software
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000052
    alias: chimera_check
    owner: Agriculture
    domain_of:
    - Agriculture
    - Checklist
    - MimarksC
    - MimarksS
    range: string
    required: true
  food_source:
    name: food_source
    description: placeholder description; linter will ignore this
    title: food source
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0001139
    alias: food_source
    owner: Agriculture
    domain_of:
    - Agriculture
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    range: string
    required: true
    pattern: '[^s\|][^\r\n\t\|]* [[a-zA-Z]+:[0-9]+]'
    structured_pattern:
      syntax: '{term_label} [{term_id}]'
  host_age:
    name: host_age
    description: placeholder description; linter will ignore this
    title: host age
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000255
    alias: host_age
    owner: Agriculture
    domain_of:
    - Agriculture
    - FoodFarmEnvironment
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - PlantAssociated
    - SymbiontAssociated
    range: string
    required: true
    pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{float} {unit}'
  host_common_name:
    name: host_common_name
    description: placeholder description; linter will ignore this
    title: host common name
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000248
    alias: host_common_name
    owner: Agriculture
    domain_of:
    - Agriculture
    - HostAssociated
    - PlantAssociated
    - SymbiontAssociated
    range: string
    required: true
    pattern: '[^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{free_text}'
  host_genotype:
    name: host_genotype
    description: placeholder description; linter will ignore this
    title: host genotype
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000365
    alias: host_genotype
    owner: Agriculture
    domain_of:
    - Agriculture
    - FoodFarmEnvironment
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - PlantAssociated
    - SymbiontAssociated
    range: string
    required: true
    pattern: '[^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{free_text}'
  host_height:
    name: host_height
    description: placeholder description; linter will ignore this
    title: host height
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000264
    alias: host_height
    owner: Agriculture
    domain_of:
    - Agriculture
    - FoodFarmEnvironment
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - PlantAssociated
    - SymbiontAssociated
    range: string
    required: true
    pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{float} {unit}'
  host_length:
    name: host_length
    description: placeholder description; linter will ignore this
    title: host length
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000256
    alias: host_length
    owner: Agriculture
    domain_of:
    - Agriculture
    - FoodFarmEnvironment
    - HostAssociated
    - PlantAssociated
    - SymbiontAssociated
    range: string
    required: true
    pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{float} {unit}'
  host_life_stage:
    name: host_life_stage
    description: placeholder description; linter will ignore this
    title: host life stage
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000251
    alias: host_life_stage
    owner: Agriculture
    domain_of:
    - Agriculture
    - HostAssociated
    - PlantAssociated
    - SymbiontAssociated
    range: string
    required: true
    pattern: '[^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{free_text}'
  host_phenotype:
    name: host_phenotype
    description: placeholder description; linter will ignore this
    title: host phenotype
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000874
    alias: host_phenotype
    owner: Agriculture
    domain_of:
    - Agriculture
    - FoodFarmEnvironment
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - PlantAssociated
    - SymbiontAssociated
    range: string
    required: true
    pattern: '[^s\|][^\r\n\t\|]* [[a-zA-Z]+:[0-9]+]'
    structured_pattern:
      syntax: '{term_label} [{term_id}]'
  host_spec_range:
    name: host_spec_range
    description: placeholder description; linter will ignore this
    title: host specificity or range
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000030
    alias: host_spec_range
    owner: Agriculture
    domain_of:
    - Agriculture
    - Checklist
    - MigsBa
    - MigsEu
    - MigsPl
    - MigsVi
    - Miuvig
    range: string
    required: true
    pattern: ([+-]?[1-9][0-9]*\|)*[+-]?[1-9][0-9]*
    structured_pattern:
      syntax: ({integer}\|)*{integer}
  host_taxid:
    name: host_taxid
    description: placeholder description; linter will ignore this
    title: host taxid
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000250
    alias: host_taxid
    owner: Agriculture
    domain_of:
    - Agriculture
    - FoodFarmEnvironment
    - HostAssociated
    - PlantAssociated
    - SymbiontAssociated
    range: integer
    required: true
  host_tot_mass:
    name: host_tot_mass
    description: placeholder description; linter will ignore this
    title: host total mass
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000263
    alias: host_tot_mass
    owner: Agriculture
    domain_of:
    - Agriculture
    - FoodFarmEnvironment
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - PlantAssociated
    - SymbiontAssociated
    range: string
    required: true
    pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{float} {unit}'
  lib_reads_seqd:
    name: lib_reads_seqd
    description: placeholder description; linter will ignore this
    title: library reads sequenced
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000040
    alias: lib_reads_seqd
    owner: Agriculture
    domain_of:
    - Agriculture
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    range: integer
    required: true
  lib_screen:
    name: lib_screen
    description: placeholder description; linter will ignore this
    title: library screening strategy
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000043
    alias: lib_screen
    owner: Agriculture
    domain_of:
    - Agriculture
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    range: string
    required: true
    pattern: '[^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{free_text}'
  lib_vector:
    name: lib_vector
    description: placeholder description; linter will ignore this
    title: library vector
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000042
    alias: lib_vector
    owner: Agriculture
    domain_of:
    - Agriculture
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    range: string
    required: true
    pattern: '[^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{free_text}'
  microbial_biomass:
    name: microbial_biomass
    description: placeholder description; linter will ignore this
    title: microbial biomass
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000650
    alias: microbial_biomass
    owner: Agriculture
    domain_of:
    - Agriculture
    - Soil
    range: string
    required: true
    pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{float} {unit}'
  mid:
    name: mid
    description: placeholder description; linter will ignore this
    title: multiplex identifiers
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000047
    alias: mid
    owner: Agriculture
    domain_of:
    - Agriculture
    - Checklist
    - Mimag
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    range: string
    required: true
    pattern: '[ACGT]+'
    structured_pattern:
      syntax: '{dna}'
  nucl_acid_amp:
    name: nucl_acid_amp
    description: placeholder description; linter will ignore this
    title: nucleic acid amplification
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000038
    alias: nucl_acid_amp
    owner: Agriculture
    domain_of:
    - Agriculture
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    range: string
    required: true
    pattern: (10.\d{4,9}/[-._;()/:a-zA-Z0-9]+)|(PMID:(\d{7,8}))|((?:https?://)?(?:www\.)?[\w-]+(?:\.[\w-]+)+[\w.,@?^=%&:/~+#-]*[\w@?^=%&/~+#-])
    structured_pattern:
      syntax: ({DOI})|({PMID})|({URL})
  nucl_acid_ext:
    name: nucl_acid_ext
    description: placeholder description; linter will ignore this
    title: nucleic acid extraction
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000037
    alias: nucl_acid_ext
    owner: Agriculture
    domain_of:
    - Agriculture
    - Checklist
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    range: string
    required: true
    pattern: (10.\d{4,9}/[-._;()/:a-zA-Z0-9]+)|(PMID:(\d{7,8}))|((?:https?://)?(?:www\.)?[\w-]+(?:\.[\w-]+)+[\w.,@?^=%&:/~+#-]*[\w@?^=%&/~+#-])
    structured_pattern:
      syntax: ({DOI})|({PMID})|({URL})
  pathogenicity:
    name: pathogenicity
    description: placeholder description; linter will ignore this
    title: known pathogenicity
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000027
    alias: pathogenicity
    owner: Agriculture
    domain_of:
    - Agriculture
    - Checklist
    - MigsBa
    - MigsEu
    - MigsVi
    - Miuvig
    range: string
    required: true
    pattern: '[^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{free_text}'
  pcr_cond:
    name: pcr_cond
    description: placeholder description; linter will ignore this
    title: pcr conditions
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000049
    alias: pcr_cond
    owner: Agriculture
    domain_of:
    - Agriculture
    - Checklist
    - MimarksC
    - MimarksS
    range: string
    required: true
  pcr_primers:
    name: pcr_primers
    description: placeholder description; linter will ignore this
    title: pcr primers
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000046
    alias: pcr_primers
    owner: Agriculture
    domain_of:
    - Agriculture
    - Checklist
    - MimarksC
    - MimarksS
    range: string
    required: true
  pool_dna_extracts:
    name: pool_dna_extracts
    description: placeholder description; linter will ignore this
    title: pooling of DNA extracts (if done)
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000325
    alias: pool_dna_extracts
    owner: Agriculture
    domain_of:
    - Agriculture
    - FoodAnimalAndAnimalFeed
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - Soil
    range: string
    required: true
  samp_mat_process:
    name: samp_mat_process
    description: placeholder description; linter will ignore this
    title: sample material processing
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000016
    alias: samp_mat_process
    owner: Agriculture
    domain_of:
    - Agriculture
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    range: string
    required: true
    pattern: '[^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{free_text}'
  samp_size:
    name: samp_size
    description: placeholder description; linter will ignore this
    title: amount or size of sample collected
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000001
    alias: samp_size
    owner: Agriculture
    domain_of:
    - Agriculture
    - Checklist
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    range: string
    required: true
    pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{float} {unit}'
  samp_store_dur:
    name: samp_store_dur
    description: placeholder description; linter will ignore this
    title: sample storage duration
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000116
    alias: samp_store_dur
    owner: Agriculture
    domain_of:
    - Agriculture
    - Air
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - PlantAssociated
    - Sediment
    - SymbiontAssociated
    - WastewaterSludge
    - Water
    range: string
    required: true
    pattern: P(?=\d+[YMWD])(\d+Y)?(\d+M)?(\d+W)?(\d+D)?(T(?=\d+[HMS])(\d+H)?(\d+M)?(\d+S)?)?
    structured_pattern:
      syntax: '{period}'
  samp_store_loc:
    name: samp_store_loc
    description: placeholder description; linter will ignore this
    title: sample storage location
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000755
    alias: samp_store_loc
    owner: Agriculture
    domain_of:
    - Agriculture
    - Air
    - FoodAnimalAndAnimalFeed
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MiscellaneousNaturalOrArtificialEnvironment
    - PlantAssociated
    - Sediment
    - SymbiontAssociated
    - WastewaterSludge
    - Water
    range: string
    required: true
    pattern: '[^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{free_text}'
  samp_vol_we_dna_ext:
    name: samp_vol_we_dna_ext
    description: placeholder description; linter will ignore this
    title: sample volume or weight for DNA extraction
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000111
    alias: samp_vol_we_dna_ext
    owner: Agriculture
    domain_of:
    - Agriculture
    - Air
    - Checklist
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - MiscellaneousNaturalOrArtificialEnvironment
    - Miuvig
    - PlantAssociated
    - Sediment
    - Soil
    - SymbiontAssociated
    - WastewaterSludge
    - Water
    range: string
    required: true
    pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{float} {unit}'
  seq_meth:
    name: seq_meth
    description: placeholder description; linter will ignore this
    title: sequencing method
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000050
    alias: seq_meth
    owner: Agriculture
    domain_of:
    - Agriculture
    - Checklist
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodFoodProductionFacility
    - FoodHumanFoods
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    range: string
    required: true
  sieving:
    name: sieving
    description: placeholder description; linter will ignore this
    title: composite design/sieving
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000322
    alias: sieving
    owner: Agriculture
    domain_of:
    - Agriculture
    - Soil
    range: string
    required: true
  soil_type:
    name: soil_type
    description: placeholder description; linter will ignore this
    title: soil type
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000332
    alias: soil_type
    owner: Agriculture
    domain_of:
    - Agriculture
    - FoodFarmEnvironment
    - Soil
    range: string
    required: true
    pattern: '[^s\|][^\r\n\t\|]* [[a-zA-Z]+:[0-9]+]'
    structured_pattern:
      syntax: '{term_label} [{term_id}]'
  soil_type_meth:
    name: soil_type_meth
    description: placeholder description; linter will ignore this
    title: soil type method
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000334
    alias: soil_type_meth
    owner: Agriculture
    domain_of:
    - Agriculture
    - FoodFarmEnvironment
    - Soil
    range: string
    required: true
    pattern: (10.\d{4,9}/[-._;()/:a-zA-Z0-9]+)|(PMID:(\d{7,8}))|((?:https?://)?(?:www\.)?[\w-]+(?:\.[\w-]+)+[\w.,@?^=%&:/~+#-]*[\w@?^=%&/~+#-])
    structured_pattern:
      syntax: ({DOI})|({PMID})|({URL})
  specific_host:
    name: specific_host
    description: placeholder description; linter will ignore this
    title: host scientific name
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000029
    alias: specific_host
    owner: Agriculture
    domain_of:
    - Agriculture
    - Checklist
    - MigsBa
    - MigsEu
    - MigsPl
    - MigsVi
    - Miuvig
    range: string
    required: true
    pattern: '[^s\|][^\r\n\t\|]*|NCBITaxon:[0-9]+'
    structured_pattern:
      syntax: '{free_text}|{ncbi_term_id}'
  store_cond:
    name: store_cond
    description: placeholder description; linter will ignore this
    title: storage conditions
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000327
    alias: store_cond
    owner: Agriculture
    domain_of:
    - Agriculture
    - Soil
    range: string
    required: true
    pattern: '[^s\|][^\r\n\t\|]*;P(?=\d+[YMWD])(\d+Y)?(\d+M)?(\d+W)?(\d+D)?(T(?=\d+[HMS])(\d+H)?(\d+M)?(\d+S)?)?'
    structured_pattern:
      syntax: '{free_text};{period}'
  target_gene:
    name: target_gene
    description: placeholder description; linter will ignore this
    title: target gene
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000044
    alias: target_gene
    owner: Agriculture
    domain_of:
    - Agriculture
    - Checklist
    - MimarksC
    - MimarksS
    range: string
    required: true
    pattern: '[^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{free_text}'
  target_subfragment:
    name: target_subfragment
    description: placeholder description; linter will ignore this
    title: target subfragment
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000045
    alias: target_subfragment
    owner: Agriculture
    domain_of:
    - Agriculture
    - Checklist
    - MimarksC
    - MimarksS
    range: string
    required: true
    pattern: '[^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{free_text}'
  temp:
    name: temp
    description: placeholder description; linter will ignore this
    title: temperature
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000113
    alias: temp
    owner: Agriculture
    domain_of:
    - Agriculture
    - Air
    - Checklist
    - FoodAnimalAndAnimalFeed
    - FoodFarmEnvironment
    - FoodHumanFoods
    - HostAssociated
    - HumanAssociated
    - HumanGut
    - HumanOral
    - HumanSkin
    - HumanVaginal
    - HydrocarbonResourcesCores
    - HydrocarbonResourcesFluidsSwabs
    - MicrobialMatBiofilm
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksC
    - MimarksS
    - Mims
    - Misag
    - MiscellaneousNaturalOrArtificialEnvironment
    - Miuvig
    - PlantAssociated
    - Sediment
    - Soil
    - SymbiontAssociated
    - WastewaterSludge
    - Water
    range: string
    required: true
    pattern: '[-+]?[0-9]*\.?[0-9]+([eE][-+]?[0-9]+)? [^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{float} {unit}'
  assembly_qual:
    name: assembly_qual
    description: placeholder description; linter will ignore this
    title: assembly quality
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000056
    alias: assembly_qual
    owner: Agriculture
    domain_of:
    - Agriculture
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - Mims
    - Misag
    - Miuvig
    range: ASSEMBLY_QUAL_ENUM
  assembly_software:
    name: assembly_software
    description: placeholder description; linter will ignore this
    title: assembly software
    from_schema: https://github.com/turbomam/mixs-subset-examples-first/tree/main/src/mixs_subset_examples_first
    rank: 1000
    slot_uri: MIXS:0000058
    alias: assembly_software
    owner: Agriculture
    domain_of:
    - Agriculture
    - Checklist
    - MigsBa
    - MigsEu
    - MigsOrg
    - MigsPl
    - MigsVi
    - Mimag
    - MimarksS
    - Mims
    - Misag
    - Miuvig
    range: string
    pattern: '[^s\|][^\r\n\t\|]*;[^s\|][^\r\n\t\|]*;[^s\|][^\r\n\t\|]*'
    structured_pattern:
      syntax: '{software};{version};{parameters}'
class_uri: MIXS:0016018