Slot: otu_class_appr
Cutoffs and approach used when clustering “species-level” OTUs. Note that results from standard 95% ANI / 85% AF clustering should be provided alongside OTUS defined from another set of thresholds, even if the latter are the ones primarily used during the analysis
URI: mixs.vocab:MIUVIG_otu_class_appr
Domain and Range
Parents
- is_a: otu_class_appr
Children
Used by
- MIUVIG
- AirMIUVIG
- BuiltEnvironmentMIUVIG
- Host-associatedMIUVIG
- Human-associatedMIUVIG
- Human-gutMIUVIG
- Human-oralMIUVIG
- Human-skinMIUVIG
- Human-vaginalMIUVIG
- HydrocarbonResources-coresMIUVIG
- HydrocarbonResources-fluidsSwabsMIUVIG
- MicrobialMatBiofilmMIUVIG
- MiscellaneousNaturalOrArtificialEnvironmentMIUVIG
- Plant-associatedMIUVIG
- SedimentMIUVIG
- SoilMIUVIG
- WastewaterSludgeMIUVIG
- WaterMIUVIG
Other properties
Aliases: | OTU classification approach | |
Mappings: | MIXS:0000085 | |
Comments: | Expected value: cutoffs and method used | |
Examples: | Example(value='95% ANI;85% AF; greedy incremental clustering', description=None) |