Slot: contam_screen_param

Specific parameters used in the decontamination sofware, such as reference database, coverage, and kmers. Combinations of these parameters may also be used, i.e. kmer and coverage, or reference database and kmer

URI: mixs.vocab:MISAG_contam_screen_param

Domain and Range

MISAG → _0..1 contam_screen_param_enum

Parents

• is_a: contam_screen_param

Children

Used by

• MISAG
• AirMISAG
• BuiltEnvironmentMISAG
• Host-associatedMISAG
• Human-associatedMISAG
• Human-gutMISAG
• Human-oralMISAG
• Human-skinMISAG
• Human-vaginalMISAG
• HydrocarbonResources-coresMISAG
• HydrocarbonResources-fluidsSwabsMISAG
• MicrobialMatBiofilmMISAG
• MiscellaneousNaturalOrArtificialEnvironmentMISAG
• Plant-associatedMISAG
• SedimentMISAG
• SoilMISAG
• WastewaterSludgeMISAG
• WaterMISAG

Other properties

Aliases:		contamination screening parameters
Mappings:		MIXS:0000073
Comments:		Expected value: enumeration;value or name
Examples:		Example(value='kmer', description=None)