Slot: contam_screen_param
Specific parameters used in the decontamination sofware, such as reference database, coverage, and kmers. Combinations of these parameters may also be used, i.e. kmer and coverage, or reference database and kmer
URI: mixs.vocab:MISAG_contam_screen_param
Domain and Range
MISAG → 0..1 contam_screen_param_enum
Parents
- is_a: contam_screen_param
Children
Used by
- MISAG
- AirMISAG
- BuiltEnvironmentMISAG
- Host-associatedMISAG
- Human-associatedMISAG
- Human-gutMISAG
- Human-oralMISAG
- Human-skinMISAG
- Human-vaginalMISAG
- HydrocarbonResources-coresMISAG
- HydrocarbonResources-fluidsSwabsMISAG
- MicrobialMatBiofilmMISAG
- MiscellaneousNaturalOrArtificialEnvironmentMISAG
- Plant-associatedMISAG
- SedimentMISAG
- SoilMISAG
- WastewaterSludgeMISAG
- WaterMISAG
Other properties
Aliases: | contamination screening parameters | |
Mappings: | MIXS:0000073 | |
Comments: | Expected value: enumeration;value or name | |
Examples: | Example(value='kmer', description=None) |