Slot: contam_score
The contamination score is based on the fraction of single-copy genes that are observed more than once in a query genome. The following scores are acceptable for; High Quality Draft: < 5%, Medium Quality Draft: < 10%, Low Quality Draft: < 10%. Contamination must be below 5% for a SAG or MAG to be deposited into any of the public databases
URI: mixs.vocab:MISAG_contam_score
Domain and Range
Parents
- is_a: contam_score
Children
Used by
- MISAG
- AirMISAG
- BuiltEnvironmentMISAG
- Host-associatedMISAG
- Human-associatedMISAG
- Human-gutMISAG
- Human-oralMISAG
- Human-skinMISAG
- Human-vaginalMISAG
- HydrocarbonResources-coresMISAG
- HydrocarbonResources-fluidsSwabsMISAG
- MicrobialMatBiofilmMISAG
- MiscellaneousNaturalOrArtificialEnvironmentMISAG
- Plant-associatedMISAG
- SedimentMISAG
- SoilMISAG
- WastewaterSludgeMISAG
- WaterMISAG
Other properties
| Aliases: | contamination score | |
| Mappings: | MIXS:0000072 | |
| Comments: | Expected value: value | |
| Examples: | Example(value='1%', description=None) |