Slot: chimera_check

Tool(s) used for chimera checking, including version number and parameters, to discover and remove chimeric sequences. A chimeric sequence is comprised of two or more phylogenetically distinct parent sequences.

URI: mixs.vocab:MIMARKS_specimen_chimera_check

Domain and Range

MIMARKSSpecimen → _0..1 String

Parents

• is_a: chimera_check

Children

Used by

• MIMARKSSpecimen
• AirMIMARKSSpecimen
• BuiltEnvironmentMIMARKSSpecimen
• Host-associatedMIMARKSSpecimen
• Human-associatedMIMARKSSpecimen
• Human-gutMIMARKSSpecimen
• Human-oralMIMARKSSpecimen
• Human-skinMIMARKSSpecimen
• Human-vaginalMIMARKSSpecimen
• HydrocarbonResources-coresMIMARKSSpecimen
• HydrocarbonResources-fluidsSwabsMIMARKSSpecimen
• MicrobialMatBiofilmMIMARKSSpecimen
• MiscellaneousNaturalOrArtificialEnvironmentMIMARKSSpecimen
• Plant-associatedMIMARKSSpecimen
• SedimentMIMARKSSpecimen
• SoilMIMARKSSpecimen
• WastewaterSludgeMIMARKSSpecimen
• WaterMIMARKSSpecimen

Other properties

Aliases:		chimera check software
Mappings:		MIXS:0000052
Comments:		Expected value: name and version of software, parameters used
Examples:		Example(value='uchime;v4.1;default parameters', description=None)