Slot: contam_score
The contamination score is based on the fraction of single-copy genes that are observed more than once in a query genome. The following scores are acceptable for; High Quality Draft: < 5%, Medium Quality Draft: < 10%, Low Quality Draft: < 10%. Contamination must be below 5% for a SAG or MAG to be deposited into any of the public databases
URI: mixs.vocab:MIMAG_contam_score
Domain and Range
Parents
- is_a: contam_score
Children
Used by
- MIMAG
- AirMIMAG
- BuiltEnvironmentMIMAG
- Host-associatedMIMAG
- Human-associatedMIMAG
- Human-gutMIMAG
- Human-oralMIMAG
- Human-skinMIMAG
- Human-vaginalMIMAG
- HydrocarbonResources-coresMIMAG
- HydrocarbonResources-fluidsSwabsMIMAG
- MicrobialMatBiofilmMIMAG
- MiscellaneousNaturalOrArtificialEnvironmentMIMAG
- Plant-associatedMIMAG
- SedimentMIMAG
- SoilMIMAG
- WastewaterSludgeMIMAG
- WaterMIMAG
Other properties
Aliases: | contamination score | |
Mappings: | MIXS:0000072 | |
Comments: | Expected value: value | |
Examples: | Example(value='1%', description=None) |