Slot: sim_search_meth
Tool used to compare ORFs with database, along with version and cutoffs used
URI: mixs.vocab:MIGS_eukaryote_sim_search_meth
Domain and Range
MIGSEukaryote → 0..1 String
Parents
- is_a: sim_search_meth
Children
Used by
- MIGSEukaryote
- AirMIGSEukaryote
- BuiltEnvironmentMIGSEukaryote
- Host-associatedMIGSEukaryote
- Human-associatedMIGSEukaryote
- Human-gutMIGSEukaryote
- Human-oralMIGSEukaryote
- Human-skinMIGSEukaryote
- Human-vaginalMIGSEukaryote
- HydrocarbonResources-coresMIGSEukaryote
- HydrocarbonResources-fluidsSwabsMIGSEukaryote
- MicrobialMatBiofilmMIGSEukaryote
- MiscellaneousNaturalOrArtificialEnvironmentMIGSEukaryote
- Plant-associatedMIGSEukaryote
- SedimentMIGSEukaryote
- SoilMIGSEukaryote
- WastewaterSludgeMIGSEukaryote
- WaterMIGSEukaryote
Other properties
| Aliases: | similarity search method | |
| Mappings: | MIXS:0000063 | |
| Comments: | Expected value: names and versions of software(s), parameters used | |
| Examples: | Example(value='HMMER3;3.1b2;hmmsearch, cutoff of 50 on score', description=None) |