Slot: sim_search_meth
Tool used to compare ORFs with database, along with version and cutoffs used
URI: mixs.vocab:MIGS_bacteria_sim_search_meth
Domain and Range
MIGSBacteria → 0..1 String
Parents
- is_a: sim_search_meth
Children
Used by
- MIGSBacteria
- AirMIGSBacteria
- BuiltEnvironmentMIGSBacteria
- Host-associatedMIGSBacteria
- Human-associatedMIGSBacteria
- Human-gutMIGSBacteria
- Human-oralMIGSBacteria
- Human-skinMIGSBacteria
- Human-vaginalMIGSBacteria
- HydrocarbonResources-coresMIGSBacteria
- HydrocarbonResources-fluidsSwabsMIGSBacteria
- MicrobialMatBiofilmMIGSBacteria
- MiscellaneousNaturalOrArtificialEnvironmentMIGSBacteria
- Plant-associatedMIGSBacteria
- SedimentMIGSBacteria
- SoilMIGSBacteria
- WastewaterSludgeMIGSBacteria
- WaterMIGSBacteria
Other properties
| Aliases: | similarity search method | |
| Mappings: | MIXS:0000063 | |
| Comments: | Expected value: names and versions of software(s), parameters used | |
| Examples: | Example(value='HMMER3;3.1b2;hmmsearch, cutoff of 50 on score', description=None) |