Class: built environment MIMARKS survey

Combinatorial checklist Minimal Information about a Marker Specimen: survey with environmental package built environment

URI: mixs.vocab:BuiltEnvironmentMIMARKSSurvey

Parents

• is_a: BuiltEnvironment - built environment

Uses Mixin

• mixin: MIMARKSSurvey - Minimal Information about a Marker Specimen: survey

Attributes

Inherited from built environment:

• lat_lon _0..1
  • Description: The geographical origin of the sample as defined by latitude and longitude. The values should be reported in decimal degrees and in WGS84 system
  • Range: String
  • Example: 50.586825 6.408977 None
• depth _0..1
  • Description: The vertical distance below local surface, e.g. for sediment or soil samples depth is measured from sediment or soil surface, respectively. Depth can be reported as an interval for subsurface samples.
  • Range: QuantityValue
  • Example: 10 meter None
• alt _0..1
  • Description: Altitude is a term used to identify heights of objects such as airplanes, space shuttles, rockets, atmospheric balloons and heights of places such as atmospheric layers and clouds. It is used to measure the height of an object which is above the earth's surface. In this context, the altitude measurement is the vertical distance between the earth's surface above sea level and the sampled position in the air
  • Range: QuantityValue
  • Example: 100 meter None
• elev _0..1
  • Description: Elevation of the sampling site is its height above a fixed reference point, most commonly the mean sea level. Elevation is mainly used when referring to points on the earth's surface, while altitude is used for points above the surface, such as an aircraft in flight or a spacecraft in orbit.
  • Range: QuantityValue
  • Example: 100 meter None
• geo_loc_name _0..1
  • Description: The geographical origin of the sample as defined by the country or sea name followed by specific region name. Country or sea names should be chosen from the INSDC country list (http://insdc.org/country.html), or the GAZ ontology (http://purl.bioontology.org/ontology/GAZ)
  • Range: String
  • Example: USA: Maryland, Bethesda None
• collection_date _0..1
  • Description: The time of sampling, either as an instance (single point in time) or interval. In case no exact time is available, the date/time can be right truncated i.e. all of these are valid times: 2008-01-23T19:23:10+00:00; 2008-01-23T19:23:10; 2008-01-23; 2008-01; 2008; Except: 2008-01; 2008 all are ISO8601 compliant
  • Range: Date
  • Example: 2018-05-11T10:00:00+01:00; 2018-05-11 None
• env_broad_scale _0..1
  • Description: Report the major environmental system the sample or specimen came from. The system(s) identified should have a coarse spatial grain, to provide the general environmental context of where the sampling was done (e.g. in the desert or a rainforest). We recommend using subclasses of EnvO’s biome class: http://purl.obolibrary.org/obo/ENVO_00000428. EnvO documentation about how to use the field: https://github.com/EnvironmentOntology/envo/wiki/Using-ENVO-with-MIxS
  • Range: String
  • Example: oceanic epipelagic zone biome [ENVO:01000033] for annotating a water sample from the photic zone in middle of the Atlantic Ocean None
• env_local_scale _0..1
  • Description: Report the entity or entities which are in the sample or specimen’s local vicinity and which you believe have significant causal influences on your sample or specimen. We recommend using EnvO terms which are of smaller spatial grain than your entry for env_broad_scale. Terms, such as anatomical sites, from other OBO Library ontologies which interoperate with EnvO (e.g. UBERON) are accepted in this field. EnvO documentation about how to use the field: https://github.com/EnvironmentOntology/envo/wiki/Using-ENVO-with-MIxS.
  • Range: String
  • Example: litter layer [ENVO:01000338]; Annotating a pooled sample taken from various vegetation layers in a forest consider: canopy [ENVO:00000047]|herb and fern layer [ENVO:01000337]|litter layer [ENVO:01000338]|understory [01000335]|shrub layer [ENVO:01000336]. None
• env_medium _0..1
  • Description: Report the environmental material(s) immediately surrounding the sample or specimen at the time of sampling. We recommend using subclasses of 'environmental material' (http://purl.obolibrary.org/obo/ENVO_00010483). EnvO documentation about how to use the field: https://github.com/EnvironmentOntology/envo/wiki/Using-ENVO-with-MIxS . Terms from other OBO ontologies are permissible as long as they reference mass/volume nouns (e.g. air, water, blood) and not discrete, countable entities (e.g. a tree, a leaf, a table top).
  • Range: String
  • Example: soil [ENVO:00001998]; Annotating a fish swimming in the upper 100 m of the Atlantic Ocean, consider: ocean water [ENVO:00002151]. Example: Annotating a duck on a pond consider: pond water [ENVO:00002228]|air [ENVO_00002005] None
• built environment➞surf_material _0..1
  • Description: Surface materials at the point of sampling
  • Range: surf_material_enum
  • Example: wood None
• built environment➞surf_air_cont _0..*
  • Description: Contaminant identified on surface
  • Range: surf_air_cont_enum
  • Example: radon None
• built environment➞rel_air_humidity _1..1
  • Description: Partial vapor and air pressure, density of the vapor and air, or by the actual mass of the vapor and air
  • Range: QuantityValue
  • Example: 80% None
• built environment➞abs_air_humidity _1..1
  • Description: Actual mass of water vapor - mh20 - present in the air water vapor mixture
  • Range: QuantityValue
  • Example: 9 gram per gram None
• built environment➞surf_humidity _0..1
  • Description: Surfaces: water activity as a function of air and material moisture
  • Range: QuantityValue
  • Example: 10% None
• built environment➞temp _1..1
  • Description: Temperature of the sample at the time of sampling.
  • Range: QuantityValue
  • Example: 25 degree Celsius None
• built environment➞surf_temp _0..1
  • Description: Temperature of the surface at the time of sampling
  • Range: QuantityValue
  • Example: 15 degree Celsius None
• built environment➞surf_moisture_ph _0..1
  • Description: ph measurement of surface
  • Range: Double
  • Example: 7 None
• built environment➞build_occup_type _1..*
  • Description: The primary function for which a building or discrete part of a building is intended to be used
  • Range: build_occup_type_enum
  • Example: market None
• built environment➞surf_moisture _0..1
  • Description: Water held on a surface
  • Range: QuantityValue
  • Example: 0.01 gram per square meter None
• built environment➞dew_point _0..1
  • Description: The temperature to which a given parcel of humid air must be cooled, at constant barometric pressure, for water vapor to condense into water.
  • Range: QuantityValue
  • Example: 22 degree Celsius None
• built environment➞carb_dioxide _1..1
  • Description: Carbon dioxide (gas) amount or concentration at the time of sampling
  • Range: QuantityValue
  • Example: 410 parts per million None
• built environment➞ventilation_type _1..1
  • Description: Ventilation system used in the sampled premises
  • Range: String
  • Example: Operable windows None
• built environment➞organism_count _1..*
  • Description: Total cell count of any organism (or group of organisms) per gram, volume or area of sample, should include name of organism followed by count. The method that was used for the enumeration (e.g. qPCR, atp, mpn, etc.) Should also be provided. (example: total prokaryotes; 3.5e7 cells per ml; qpcr)
  • Range: organism_count_enum
  • Example: total prokaryotes;3.5e7 cells per milliliter;qPCR None
• built environment➞indoor_space _1..1
  • Description: A distinguishable space within a structure, the purpose for which discrete areas of a building is used
  • Range: indoor_space_enum
  • Example: foyer None
• built environment➞indoor_surf _0..1
  • Description: Type of indoor surface
  • Range: indoor_surf_enum
  • Example: wall None
• built environment➞filter_type _1..*
  • Description: A device which removes solid particulates or airborne molecular contaminants
  • Range: filter_type_enum
  • Example: HEPA None
• built environment➞heat_cool_type _1..*
  • Description: Methods of conditioning or heating a room or building
  • Range: heat_cool_type_enum
  • Example: heat pump None
• built environment➞substructure_type _0..*
  • Description: The substructure or under building is that largely hidden section of the building which is built off the foundations to the ground floor level
  • Range: substructure_type_enum
  • Example: basement None
• built environment➞building_setting _1..1
  • Description: A location (geography) where a building is set
  • Range: building_setting_enum
  • Example: rural None
• built environment➞light_type _1..*
  • Description: Application of light to achieve some practical or aesthetic effect. Lighting includes the use of both artificial light sources such as lamps and light fixtures, as well as natural illumination by capturing daylight. Can also include absence of light
  • Range: light_type_enum
  • Example: desk lamp None
• built environment➞samp_sort_meth _0..*
  • Description: Method by which samples are sorted; open face filter collecting total suspended particles, prefilter to remove particles larger than X micrometers in diameter, where common values of X would be 10 and 2.5 full size sorting in a cascade impactor.
  • Range: String
  • Example: None
• built environment➞space_typ_state _1..1
  • Description: Customary or normal state of the space
  • Range: String
  • Example: typically occupied None
• built environment➞typ_occup_density _1..1
  • Description: Customary or normal density of occupants
  • Range: Double
  • Example: 25 None
• built environment➞occup_samp _1..1
  • Description: Number of occupants present at time of sample within the given space
  • Range: Integer
  • Example: 10 None
• built environment➞occup_density_samp _1..1
  • Description: Average number of occupants at time of sampling per square footage
  • Range: Double
  • Example: None
• built environment➞address _0..1
  • Description: The street name and building number where the sampling occurred.
  • Range: String
  • Example: None
• built environment➞adj_room _0..1
  • Description: List of rooms (room number, room name) immediately adjacent to the sampling room
  • Range: String
  • Example: None
• built environment➞aero_struc _0..1
  • Description: Aerospace structures typically consist of thin plates with stiffeners for the external surfaces, bulkheads and frames to support the shape and fasteners such as welds, rivets, screws and bolts to hold the components together
  • Range: String
  • Example: plane None
• built environment➞amount_light _0..1
  • Description: The unit of illuminance and luminous emittance, measuring luminous flux per unit area
  • Range: QuantityValue
  • Example: None
• built environment➞arch_struc _0..1
  • Description: An architectural structure is a human-made, free-standing, immobile outdoor construction
  • Range: arch_struc_enum
  • Example: shed None
• built environment➞avg_occup _0..1
  • Description: Daily average occupancy of room. Indicate the number of person(s) daily occupying the sampling room.
  • Range: Double
  • Example: 2 None
• built environment➞avg_dew_point _0..1
  • Description: The average of dew point measures taken at the beginning of every hour over a 24 hour period on the sampling day
  • Range: QuantityValue
  • Example: 25.5 degree Celsius None
• built environment➞avg_temp _0..1
  • Description: The average of temperatures taken at the beginning of every hour over a 24 hour period on the sampling day
  • Range: QuantityValue
  • Example: 12.5 degree Celsius None
• built environment➞bathroom_count _0..1
  • Description: The number of bathrooms in the building
  • Range: Integer
  • Example: 1 None
• built environment➞bedroom_count _0..1
  • Description: The number of bedrooms in the building
  • Range: Integer
  • Example: 2 None
• built environment➞built_struc_age _0..1
  • Description: The age of the built structure since construction
  • Range: QuantityValue
  • Example: 15 None
• built environment➞built_struc_set _0..1
  • Description: The characterization of the location of the built structure as high or low human density
  • Range: String
  • Example: rural None
• built environment➞built_struc_type _0..1
  • Description: A physical structure that is a body or assemblage of bodies in space to form a system capable of supporting loads
  • Range: String
  • Example: None
• built environment➞ceil_area _0..1
  • Description: The area of the ceiling space within the room
  • Range: QuantityValue
  • Example: 25 square meter None
• built environment➞ceil_cond _0..1
  • Description: The physical condition of the ceiling at the time of sampling; photos or video preferred; use drawings to indicate location of damaged areas
  • Range: ceil_cond_enum
  • Example: damaged None
• built environment➞ceil_finish_mat _0..1
  • Description: The type of material used to finish a ceiling
  • Range: ceil_finish_mat_enum
  • Example: stucco None
• built environment➞ceil_water_mold _0..1
  • Description: Signs of the presence of mold or mildew on the ceiling
  • Range: String
  • Example: presence of mold visible None
• built environment➞ceil_struc _0..1
  • Description: The construction format of the ceiling
  • Range: String
  • Example: concrete None
• built environment➞ceil_texture _0..1
  • Description: The feel, appearance, or consistency of a ceiling surface
  • Range: ceil_texture_enum
  • Example: popcorn None
• built environment➞ceil_thermal_mass _0..1
  • Description: The ability of the ceiling to provide inertia against temperature fluctuations. Generally this means concrete that is exposed. A metal deck that supports a concrete slab will act thermally as long as it is exposed to room air flow
  • Range: QuantityValue
  • Example: None
• built environment➞ceil_type _0..1
  • Description: The type of ceiling according to the ceiling's appearance or construction
  • Range: ceil_type_enum
  • Example: coffered None
• built environment➞cool_syst_id _0..1
  • Description: The cooling system identifier
  • Range: Integer
  • Example: 12345 None
• built environment➞date_last_rain _0..1
  • Description: The date of the last time it rained
  • Range: Date
  • Example: 2018-05-11:T14:30Z None
• built environment➞build_docs _0..1
  • Description: The building design, construction and operation documents
  • Range: build_docs_enum
  • Example: maintenance plans None
• built environment➞door_size _0..1
  • Description: The size of the door
  • Range: QuantityValue
  • Example: 2.5 square meter None
• built environment➞door_cond _0..1
  • Description: The phsical condition of the door
  • Range: door_cond_enum
  • Example: new None
• built environment➞door_direct _0..1
  • Description: The direction the door opens
  • Range: door_direct_enum
  • Example: inward None
• built environment➞door_loc _0..1
  • Description: The relative location of the door in the room
  • Range: door_loc_enum
  • Example: north None
• built environment➞door_mat _0..1
  • Description: The material the door is composed of
  • Range: door_mat_enum
  • Example: wood None
• built environment➞door_move _0..1
  • Description: The type of movement of the door
  • Range: door_move_enum
  • Example: swinging None
• built environment➞door_water_mold _0..1
  • Description: Signs of the presence of mold or mildew on a door
  • Range: String
  • Example: presence of mold visible None
• built environment➞door_type _0..1
  • Description: The type of door material
  • Range: door_type_enum
  • Example: wooden None
• built environment➞door_comp_type _0..1
  • Description: The composite type of the door
  • Range: door_comp_type_enum
  • Example: revolving None
• built environment➞door_type_metal _0..1
  • Description: The type of metal door
  • Range: door_type_metal_enum
  • Example: hollow None
• built environment➞door_type_wood _0..1
  • Description: The type of wood door
  • Range: door_type_wood_enum
  • Example: battened None
• built environment➞drawings _0..1
  • Description: The buildings architectural drawings; if design is chosen, indicate phase-conceptual, schematic, design development, and construction documents
  • Range: drawings_enum
  • Example: sketch None
• built environment➞elevator _0..1
  • Description: The number of elevators within the built structure
  • Range: Integer
  • Example: 2 None
• built environment➞escalator _0..1
  • Description: The number of escalators within the built structure
  • Range: Integer
  • Example: 4 None
• built environment➞exp_duct _0..1
  • Description: The amount of exposed ductwork in the room
  • Range: QuantityValue
  • Example: None
• built environment➞exp_pipe _0..1
  • Description: The number of exposed pipes in the room
  • Range: Integer
  • Example: None
• built environment➞ext_door _0..1
  • Description: The number of exterior doors in the built structure
  • Range: Integer
  • Example: None
• built environment➞fireplace_type _0..1
  • Description: A firebox with chimney
  • Range: String
  • Example: wood burning None
• built environment➞floor_age _0..1
  • Description: The time period since installment of the carpet or flooring
  • Range: QuantityValue
  • Example: None
• built environment➞floor_area _0..1
  • Description: The area of the floor space within the room
  • Range: QuantityValue
  • Example: None
• built environment➞floor_cond _0..1
  • Description: The physical condition of the floor at the time of sampling; photos or video preferred; use drawings to indicate location of damaged areas
  • Range: floor_cond_enum
  • Example: new None
• built environment➞floor_count _0..1
  • Description: The number of floors in the building, including basements and mechanical penthouse
  • Range: Integer
  • Example: None
• built environment➞floor_finish_mat _0..1
  • Description: The floor covering type; the finished surface that is walked on
  • Range: floor_finish_mat_enum
  • Example: carpet None
• built environment➞floor_water_mold _0..1
  • Description: Signs of the presence of mold or mildew in a room
  • Range: floor_water_mold_enum
  • Example: ceiling discoloration None
• built environment➞floor_struc _0..1
  • Description: Refers to the structural elements and subfloor upon which the finish flooring is installed
  • Range: floor_struc_enum
  • Example: concrete None
• built environment➞floor_thermal_mass _0..1
  • Description: The ability of the floor to provide inertia against temperature fluctuations
  • Range: QuantityValue
  • Example: None
• built environment➞freq_clean _0..1
  • Description: The number of times the sample location is cleaned. Frequency of cleaning might be on a Daily basis, Weekly, Monthly, Quarterly or Annually.
  • Range: freq_clean_enum
  • Example: None
• built environment➞freq_cook _0..1
  • Description: The number of times a meal is cooked per week
  • Range: Integer
  • Example: None
• built environment➞furniture _0..1
  • Description: The types of furniture present in the sampled room
  • Range: furniture_enum
  • Example: chair None
• built environment➞gender_restroom _0..1
  • Description: The gender type of the restroom
  • Range: gender_restroom_enum
  • Example: male None
• built environment➞hall_count _0..1
  • Description: The total count of hallways and cooridors in the built structure
  • Range: Integer
  • Example: None
• built environment➞handidness _0..1
  • Description: The handidness of the individual sampled
  • Range: handidness_enum
  • Example: right handedness None
• built environment➞heat_deliv_loc _0..1
  • Description: The location of heat delivery within the room
  • Range: heat_deliv_loc_enum
  • Example: north None
• built environment➞heat_sys_deliv_meth _0..1
  • Description: The method by which the heat is delivered through the system
  • Range: String
  • Example: radiant None
• built environment➞heat_system_id _0..1
  • Description: The heating system identifier
  • Range: Integer
  • Example: None
• built environment➞height_carper_fiber _0..1
  • Description: The average carpet fiber height in the indoor environment
  • Range: QuantityValue
  • Example: None
• built environment➞inside_lux _0..1
  • Description: The recorded value at sampling time (power density)
  • Range: QuantityValue
  • Example: None
• built environment➞int_wall_cond _0..1
  • Description: The physical condition of the wall at the time of sampling; photos or video preferred; use drawings to indicate location of damaged areas
  • Range: int_wall_cond_enum
  • Example: damaged None
• built environment➞last_clean _0..1
  • Description: The last time the floor was cleaned (swept, mopped, vacuumed)
  • Range: Date
  • Example: 2018-05-11:T14:30Z None
• built environment➞max_occup _0..1
  • Description: The maximum amount of people allowed in the indoor environment
  • Range: Integer
  • Example: None
• built environment➞mech_struc _0..1
  • Description: mechanical structure: a moving structure
  • Range: mech_struc_enum
  • Example: elevator None
• built environment➞number_plants _0..1
  • Description: The number of plant(s) in the sampling space
  • Range: Integer
  • Example: None
• built environment➞number_pets _0..1
  • Description: The number of pets residing in the sampled space
  • Range: Integer
  • Example: None
• built environment➞number_resident _0..1
  • Description: The number of individuals currently occupying in the sampling location
  • Range: Integer
  • Example: None
• built environment➞occup_document _0..1
  • Description: The type of documentation of occupancy
  • Range: occup_document_enum
  • Example: estimate None
• built environment➞ext_wall_orient _0..1
  • Description: The orientation of the exterior wall
  • Range: ext_wall_orient_enum
  • Example: northwest None
• built environment➞ext_window_orient _0..1
  • Description: The compass direction the exterior window of the room is facing
  • Range: ext_window_orient_enum
  • Example: southwest None
• built environment➞rel_humidity_out _0..1
  • Description: The recorded outside relative humidity value at the time of sampling
  • Range: QuantityValue
  • Example: 12 per kilogram of air None
• built environment➞pres_animal_insect _0..1
  • Description: The type and number of animals or insects present in the sampling space.
  • Range: pres_animal_insect_enum
  • Example: cat;5 None
• built environment➞quad_pos _0..1
  • Description: The quadrant position of the sampling room within the building
  • Range: quad_pos_enum
  • Example: West side None
• built environment➞rel_samp_loc _0..1
  • Description: The sampling location within the train car
  • Range: rel_samp_loc_enum
  • Example: center of car None
• built environment➞room_air_exch_rate _0..1
  • Description: The rate at which outside air replaces indoor air in a given space
  • Range: QuantityValue
  • Example: None
• built environment➞room_architec_elem _0..1
  • Description: The unique details and component parts that, together, form the architecture of a distinguisahable space within a built structure
  • Range: String
  • Example: None
• built environment➞room_condt _0..1
  • Description: The condition of the room at the time of sampling
  • Range: room_condt_enum
  • Example: new None
• built environment➞room_count _0..1
  • Description: The total count of rooms in the built structure including all room types
  • Range: Integer
  • Example: None
• built environment➞room_dim _0..1
  • Description: The length, width and height of sampling room
  • Range: String
  • Example: None
• built environment➞room_door_dist _0..1
  • Description: Distance between doors (meters) in the hallway between the sampling room and adjacent rooms
  • Range: String
  • Example: None
• built environment➞room_loc _0..1
  • Description: The position of the room within the building
  • Range: room_loc_enum
  • Example: interior room None
• built environment➞room_moist_dam_hist _0..1
  • Description: The history of moisture damage or mold in the past 12 months. Number of events of moisture damage or mold observed
  • Range: Integer
  • Example: None
• built environment➞room_net_area _0..1
  • Description: The net floor area of sampling room. Net area excludes wall thicknesses
  • Range: String
  • Example: None
• built environment➞room_occup _0..1
  • Description: Count of room occupancy at time of sampling
  • Range: Integer
  • Example: None
• built environment➞room_samp_pos _0..1
  • Description: The horizontal sampling position in the room relative to architectural elements
  • Range: room_samp_pos_enum
  • Example: south corner None
• built environment➞room_type _0..1
  • Description: The main purpose or activity of the sampling room. A room is any distinguishable space within a structure
  • Range: room_type_enum
  • Example: bathroom None
• built environment➞room_vol _0..1
  • Description: Volume of sampling room
  • Range: String
  • Example: None
• built environment➞room_window_count _0..1
  • Description: Number of windows in the room
  • Range: Integer
  • Example: None
• built environment➞room_connected _0..1
  • Description: List of rooms connected to the sampling room by a doorway
  • Range: room_connected_enum
  • Example: office None
• built environment➞room_hallway _0..1
  • Description: List of room(s) (room number, room name) located in the same hallway as sampling room
  • Range: String
  • Example: None
• built environment➞room_door_share _0..1
  • Description: List of room(s) (room number, room name) sharing a door with the sampling room
  • Range: String
  • Example: None
• built environment➞room_wall_share _0..1
  • Description: List of room(s) (room number, room name) sharing a wall with the sampling room
  • Range: String
  • Example: None
• built environment➞samp_weather _0..1
  • Description: The weather on the sampling day
  • Range: samp_weather_enum
  • Example: foggy None
• built environment➞samp_floor _0..1
  • Description: The floor of the building, where the sampling room is located
  • Range: samp_floor_enum
  • Example: 4th floor None
• built environment➞samp_room_id _0..1
  • Description: Sampling room number. This ID should be consistent with the designations on the building floor plans
  • Range: Integer
  • Example: None
• built environment➞samp_time_out _0..1
  • Description: The recent and long term history of outside sampling
  • Range: Double
  • Example: None
• built environment➞season _0..1
  • Description: The season when sampling occurred. Any of the four periods into which the year is divided by the equinoxes and solstices. This field accepts terms listed under season (http://purl.obolibrary.org/obo/NCIT_C94729).
  • Range: String
  • Example: autumn [NCIT:C94733] None
• built environment➞season_use _0..1
  • Description: The seasons the space is occupied
  • Range: season_use_enum
  • Example: Winter None
• built environment➞shading_device_cond _0..1
  • Description: The physical condition of the shading device at the time of sampling
  • Range: shading_device_cond_enum
  • Example: new None
• built environment➞shading_device_loc _0..1
  • Description: The location of the shading device in relation to the built structure
  • Range: String
  • Example: exterior None
• built environment➞shading_device_mat _0..1
  • Description: The material the shading device is composed of
  • Range: String
  • Example: None
• built environment➞shad_dev_water_mold _0..1
  • Description: Signs of the presence of mold or mildew on the shading device
  • Range: String
  • Example: no presence of mold visible None
• built environment➞shading_device_type _0..1
  • Description: The type of shading device
  • Range: shading_device_type_enum
  • Example: slatted aluminum awning None
• built environment➞specific_humidity _0..1
  • Description: The mass of water vapour in a unit mass of moist air, usually expressed as grams of vapour per kilogram of air, or, in air conditioning, as grains per pound.
  • Range: QuantityValue
  • Example: 15 per kilogram of air None
• built environment➞specific _0..1
  • Description: The building specifications. If design is chosen, indicate phase: conceptual, schematic, design development, construction documents
  • Range: specific_enum
  • Example: construction None
• built environment➞temp_out _0..1
  • Description: The recorded temperature value at sampling time outside
  • Range: QuantityValue
  • Example: 5 degree Celsius None
• built environment➞train_line _0..1
  • Description: The subway line name
  • Range: train_line_enum
  • Example: red None
• built environment➞train_stat_loc _0..1
  • Description: The train station collection location
  • Range: train_stat_loc_enum
  • Example: forest hills None
• built environment➞train_stop_loc _0..1
  • Description: The train stop collection location
  • Range: train_stop_loc_enum
  • Example: end None
• built environment➞vis_media _0..1
  • Description: The building visual media
  • Range: vis_media_enum
  • Example: 3D scans None
• built environment➞wall_area _0..1
  • Description: The total area of the sampled room's walls
  • Range: QuantityValue
  • Example: None
• built environment➞wall_const_type _0..1
  • Description: The building class of the wall defined by the composition of the building elements and fire-resistance rating.
  • Range: wall_const_type_enum
  • Example: fire resistive None
• built environment➞wall_finish_mat _0..1
  • Description: The material utilized to finish the outer most layer of the wall
  • Range: wall_finish_mat_enum
  • Example: wood None
• built environment➞wall_height _0..1
  • Description: The average height of the walls in the sampled room
  • Range: QuantityValue
  • Example: None
• built environment➞wall_loc _0..1
  • Description: The relative location of the wall within the room
  • Range: wall_loc_enum
  • Example: north None
• built environment➞wall_water_mold _0..1
  • Description: Signs of the presence of mold or mildew on a wall
  • Range: String
  • Example: no presence of mold visible None
• built environment➞wall_surf_treatment _0..1
  • Description: The surface treatment of interior wall
  • Range: wall_surf_treatment_enum
  • Example: paneling None
• built environment➞wall_texture _0..1
  • Description: The feel, appearance, or consistency of a wall surface
  • Range: wall_texture_enum
  • Example: popcorn None
• built environment➞wall_thermal_mass _0..1
  • Description: The ability of the wall to provide inertia against temperature fluctuations. Generally this means concrete or concrete block that is either exposed or covered only with paint
  • Range: QuantityValue
  • Example: None
• built environment➞water_feat_size _0..1
  • Description: The size of the water feature
  • Range: QuantityValue
  • Example: None
• built environment➞water_feat_type _0..1
  • Description: The type of water feature present within the building being sampled
  • Range: water_feat_type_enum
  • Example: stream None
• built environment➞weekday _0..1
  • Description: The day of the week when sampling occurred
  • Range: weekday_enum
  • Example: Sunday None
• built environment➞window_size _0..1
  • Description: The window's length and width
  • Range: String
  • Example: None
• built environment➞window_cond _0..1
  • Description: The physical condition of the window at the time of sampling
  • Range: window_cond_enum
  • Example: rupture None
• built environment➞window_cover _0..1
  • Description: The type of window covering
  • Range: window_cover_enum
  • Example: curtains None
• built environment➞window_horiz_pos _0..1
  • Description: The horizontal position of the window on the wall
  • Range: window_horiz_pos_enum
  • Example: middle None
• built environment➞window_loc _0..1
  • Description: The relative location of the window within the room
  • Range: window_loc_enum
  • Example: west None
• built environment➞window_mat _0..1
  • Description: The type of material used to finish a window
  • Range: window_mat_enum
  • Example: wood None
• built environment➞window_open_freq _0..1
  • Description: The number of times windows are opened per week
  • Range: Integer
  • Example: None
• built environment➞window_water_mold _0..1
  • Description: Signs of the presence of mold or mildew on the window.
  • Range: String
  • Example: no presence of mold visible None
• built environment➞window_status _0..1
  • Description: Defines whether the windows were open or closed during environmental testing
  • Range: String
  • Example: open None
• built environment➞window_type _0..1
  • Description: The type of windows
  • Range: window_type_enum
  • Example: fixed window None
• built environment➞window_vert_pos _0..1
  • Description: The vertical position of the window on the wall
  • Range: window_vert_pos_enum
  • Example: middle None
• built environment➞samp_name _1..1
  • Description: A local identifier or name that for the material sample used for extracting nucleic acids, and subsequent sequencing. It can refer either to the original material collected or to any derived sub-samples. It can have any format, but we suggest that you make it concise, unique and consistent within your lab, and as informative as possible. INSDC requires every sample name from a single Submitter to be unique. Use of a globally unique identifier for the field source_mat_id is recommended in addition to sample_name.
  • Range: String
  • Example: ISDsoil1 None
• built environment➞project_name _1..1
  • Description: Name of the project within which the sequencing was organized
  • Range: String
  • Example: Forest soil metagenome None

Mixed in from MIMARKS survey:

• MIMARKS survey➞submitted_to_insdc _1..1
  • Description: Depending on the study (large-scale e.g. done with next generation sequencing technology, or small-scale) sequences have to be submitted to SRA (Sequence Read Archive), DRA (DDBJ Read Archive) or via the classical Webin/Sequin systems to Genbank, ENA and DDBJ. Although this field is mandatory, it is meant as a self-test field, therefore it is not necessary to include this field in contextual data submitted to databases
  • Range: String
  • Example: yes None

Mixed in from MIMARKS survey:

• MIMARKS survey➞investigation_type _1..1
  • Description: Nucleic Acid Sequence Report is the root element of all MIGS/MIMS compliant reports as standardized by Genomic Standards Consortium. This field is either eukaryote,bacteria,virus,plasmid,organelle, metagenome,mimarks-survey, mimarks-specimen, metatranscriptome, single amplified genome, metagenome-assembled genome, or uncultivated viral genome
  • Range: investigation_type_enum
  • Example: metagenome None

Mixed in from MIMARKS survey:

• MIMARKS survey➞samp_taxon_id _1..1
  • Description: NCBI taxon id of the sample. Maybe be a single taxon or mixed taxa sample. Use 'synthetic metagenome’ for mock community/positive controls, or 'blank sample' for negative controls.
  • Range: String
  • Example: Gut Metagenome [NCBI:txid749906] None

Mixed in from MIMARKS survey:

• MIMARKS survey➞experimental_factor _0..1
  • Description: Experimental factors are essentially the variable aspects of an experiment design which can be used to describe an experiment, or set of experiments, in an increasingly detailed manner. This field accepts ontology terms from Experimental Factor Ontology (EFO) and/or Ontology for Biomedical Investigations (OBI). For a browser of EFO (v 2.95) terms, please see http://purl.bioontology.org/ontology/EFO; for a browser of OBI (v 2018-02-12) terms please see http://purl.bioontology.org/ontology/OBI
  • Range: String
  • Example: time series design [EFO:EFO_0001779] None

Mixed in from MIMARKS survey:

• MIMARKS survey➞neg_cont_type _0..1
  • Description: The substance or equipment used as a negative control in an investigation
  • Range: neg_cont_type_enum
  • Example: None

Mixed in from MIMARKS survey:

• MIMARKS survey➞pos_cont_type _0..1
  • Description: The substance, mixture, product, or apparatus used to verify that a process which is part of an investigation delivers a true positive.
  • Range: String
  • Example: None

Mixed in from MIMARKS survey:

• MIMARKS survey➞env_package _0..1
  • Description: MIxS extension for reporting of measurements and observations obtained from one or more of the environments where the sample was obtained. All environmental packages listed here are further defined in separate subtables. By giving the name of the environmental package, a selection of fields can be made from the subtables and can be reported
  • Range: env_package_enum
  • Example: soil None

Mixed in from MIMARKS survey:

• MIMARKS survey➞subspecf_gen_lin _0..1
  • Description: Information about the genetic distinctness of the sequenced organism below the subspecies level, e.g., serovar, serotype, biotype, ecotype, or any relevant genetic typing schemes like Group I plasmid. Subspecies should not be recorded in this term, but in the NCBI taxonomy. Supply both the lineage name and the lineage rank separated by a colon, e.g., biovar:abc123.
  • Range: String
  • Example: serovar:Newport None

Mixed in from MIMARKS survey:

• MIMARKS survey➞extrachrom_elements _0..1
  • Description: Do plasmids exist of significant phenotypic consequence (e.g. ones that determine virulence or antibiotic resistance). Megaplasmids? Other plasmids (borrelia has 15+ plasmids)
  • Range: Integer
  • Example: 5 None

Mixed in from MIMARKS survey:

• MIMARKS survey➞source_mat_id _0..1
  • Description: A unique identifier assigned to a material sample (as defined by http://rs.tdwg.org/dwc/terms/materialSampleID, and as opposed to a particular digital record of a material sample) used for extracting nucleic acids, and subsequent sequencing. The identifier can refer either to the original material collected or to any derived sub-samples. The INSDC qualifiers /specimen_voucher, /bio_material, or /culture_collection may or may not share the same value as the source_mat_id field. For instance, the /specimen_voucher qualifier and source_mat_id may both contain 'UAM:Herps:14' , referring to both the specimen voucher and sampled tissue with the same identifier. However, the /culture_collection qualifier may refer to a value from an initial culture (e.g. ATCC:11775) while source_mat_id would refer to an identifier from some derived culture from which the nucleic acids were extracted (e.g. xatc123 or ark:/2154/R2).
  • Range: String
  • Example: MPI012345 None

Mixed in from MIMARKS survey:

• MIMARKS survey➞biotic_relationship _0..1
  • Description: Description of relationship(s) between the subject organism and other organism(s) it is associated with. E.g., parasite on species X; mutualist with species Y. The target organism is the subject of the relationship, and the other organism(s) is the object
  • Range: biotic_relationship_enum
  • Example: free living None

Mixed in from MIMARKS survey:

• MIMARKS survey➞trophic_level _0..1
  • Description: Trophic levels are the feeding position in a food chain. Microbes can be a range of producers (e.g. chemolithotroph)
  • Range: trophic_level_enum
  • Example: heterotroph None

Mixed in from MIMARKS survey:

• MIMARKS survey➞rel_to_oxygen _0..1
  • Description: Is this organism an aerobe, anaerobe? Please note that aerobic and anaerobic are valid descriptors for microbial environments
  • Range: rel_to_oxygen_enum
  • Example: aerobe None

Mixed in from MIMARKS survey:

• MIMARKS survey➞isol_growth_condt _1..1
  • Description: Publication reference in the form of pubmed ID (pmid), digital object identifier (doi) or url for isolation and growth condition specifications of the organism/material
  • Range: String
  • Example: doi: 10.1016/j.syapm.2018.01.009 None

Mixed in from MIMARKS survey:

• MIMARKS survey➞samp_collec_device _0..1
  • Description: The device used to collect an environmental sample. This field accepts terms listed under environmental sampling device (http://purl.obolibrary.org/obo/ENVO). This field also accepts terms listed under specimen collection device (http://purl.obolibrary.org/obo/GENEPIO_0002094).
  • Range: String
  • Example: swab, biopsy, niskin bottle, push core, drag swab [GENEPIO:0002713] None

Mixed in from MIMARKS survey:

• MIMARKS survey➞samp_collec_method _0..1
  • Description: The method employed for collecting the sample.
  • Range: String
  • Example: swabbing None

Mixed in from MIMARKS survey:

• MIMARKS survey➞samp_mat_process _0..1
  • Description: A brief description of any processing applied to the sample during or after retrieving the sample from environment, or a link to the relevant protocol(s) performed.
  • Range: String
  • Example: filtering of seawater, storing samples in ethanol None

Mixed in from MIMARKS survey:

• MIMARKS survey➞samp_size _0..1
  • Description: The total amount or size (volume (ml), mass (g) or area (m2) ) of sample collected.
  • Range: QuantityValue
  • Example: 5 liter None

Mixed in from MIMARKS survey:

• MIMARKS survey➞samp_vol_we_dna_ext _0..1
  • Description: Volume (ml) or mass (g) of total collected sample processed for DNA extraction. Note: total sample collected should be entered under the term Sample Size (MIXS:0000001).
  • Range: QuantityValue
  • Example: 1500 milliliter None

Mixed in from MIMARKS survey:

• MIMARKS survey➞nucl_acid_ext _0..1
  • Description: A link to a literature reference, electronic resource or a standard operating procedure (SOP), that describes the material separation to recover the nucleic acid fraction from a sample
  • Range: String
  • Example: https://mobio.com/media/wysiwyg/pdfs/protocols/12888.pdf None

Mixed in from MIMARKS survey:

• MIMARKS survey➞nucl_acid_amp _0..1
  • Description: A link to a literature reference, electronic resource or a standard operating procedure (SOP), that describes the enzymatic amplification (PCR, TMA, NASBA) of specific nucleic acids
  • Range: String
  • Example: https://phylogenomics.me/protocols/16s-pcr-protocol/ None

Mixed in from MIMARKS survey:

• MIMARKS survey➞target_gene _1..1
  • Description: Targeted gene or locus name for marker gene studies
  • Range: String
  • Example: 16S rRNA, 18S rRNA, nif, amoA, rpo None

Mixed in from MIMARKS survey:

• MIMARKS survey➞target_subfragment _0..1
  • Description: Name of subfragment of a gene or locus. Important to e.g. identify special regions on marker genes like V6 on 16S rRNA
  • Range: String
  • Example: V6, V9, ITS None

Mixed in from MIMARKS survey:

• MIMARKS survey➞pcr_primers _0..1
  • Description: PCR primers that were used to amplify the sequence of the targeted gene, locus or subfragment. This field should contain all the primers used for a single PCR reaction if multiple forward or reverse primers are present in a single PCR reaction. The primer sequence should be reported in uppercase letters
  • Range: String
  • Example: FWD:GTGCCAGCMGCCGCGGTAA;REV:GGACTACHVGGGTWTCTAAT None

Mixed in from MIMARKS survey:

• MIMARKS survey➞pcr_cond _0..1
  • Description: Description of reaction conditions and components of PCR in the form of 'initial denaturation:94degC_1.5min; annealing=...'
  • Range: String
  • Example: initial denaturation:94_3;annealing:50_1;elongation:72_1.5;final elongation:72_10;35 None

Mixed in from MIMARKS survey:

• MIMARKS survey➞seq_meth _1..1
  • Description: Sequencing machine used. Where possible the term should be taken from the OBI list of DNA sequencers (http://purl.obolibrary.org/obo/OBI_0400103).
  • Range: String
  • Example: 454 Genome Sequencer FLX [OBI:0000702] None

Mixed in from MIMARKS survey:

• MIMARKS survey➞seq_quality_check _0..1
  • Description: Indicate if the sequence has been called by automatic systems (none) or undergone a manual editing procedure (e.g. by inspecting the raw data or chromatograms). Applied only for sequences that are not submitted to SRA,ENA or DRA
  • Range: String
  • Example: none None

Mixed in from MIMARKS survey:

• MIMARKS survey➞chimera_check _0..1
  • Description: Tool(s) used for chimera checking, including version number and parameters, to discover and remove chimeric sequences. A chimeric sequence is comprised of two or more phylogenetically distinct parent sequences.
  • Range: String
  • Example: uchime;v4.1;default parameters None

Mixed in from MIMARKS survey:

• MIMARKS survey➞associated resource _0..1
  • Description: A related resource that is referenced, cited, or otherwise associated to the sequence.
  • Range: String
  • Example: http://www.earthmicrobiome.org/ None

Mixed in from MIMARKS survey:

• MIMARKS survey➞sop _0..1
  • Description: Standard operating procedures used in assembly and/or annotation of genomes, metagenomes or environmental sequences
  • Range: String
  • Example: http://press.igsb.anl.gov/earthmicrobiome/protocols-and-standards/its/ None